Uses of Interface
loci.formats.meta.MetadataRetrieve

Packages that use MetadataRetrieve

Package	Description
loci.formats	Bio-Formats: a library for reading and writing popular microscopy file formats.
loci.formats.gui	Package containing Bio-Formats graphical user interface code.
loci.formats.meta	Package containing core Bio-Formats metadata interfaces for the OME data model.
loci.formats.ome	Package containing Bio-Formats OME-related logic for OME-XML metadata, and database import, upload and download.
loci.formats.out	Package containing Bio-Formats file format writers.
loci.formats.services

Uses of MetadataRetrieve in loci.formats

Fields in loci.formats declared as MetadataRetrieve

Modifier and Type	Field and Description
protected MetadataRetrieve	FormatWriter.metadataRetrieve Current metadata retrieval object.

Methods in loci.formats that return MetadataRetrieve

Modifier and Type	Method and Description
MetadataRetrieve	ImageWriter.getMetadataRetrieve()
MetadataRetrieve	IFormatWriter.getMetadataRetrieve() Retrieves the current metadata retrieval object for this writer.
MetadataRetrieve	FormatWriter.getMetadataRetrieve()
MetadataRetrieve	WriterWrapper.getMetadataRetrieve()

Methods in loci.formats with parameters of type MetadataRetrieve

Modifier and Type	Method and Description
static String	FormatTools.getFilename(int series, int image, MetadataRetrieve retrieve, String pattern, boolean padded)
void	ImageWriter.setMetadataRetrieve(MetadataRetrieve r)
void	IFormatWriter.setMetadataRetrieve(MetadataRetrieve r) Sets the metadata retrieval object from which to retrieve standardized metadata.
void	FormatWriter.setMetadataRetrieve(MetadataRetrieve retrieve)
void	WriterWrapper.setMetadataRetrieve(MetadataRetrieve r)
static void	MetadataTools.verifyMinimumPopulated(MetadataRetrieve src) Checks whether the given metadata object has the minimum metadata populated to successfully describe an Image.
static void	MetadataTools.verifyMinimumPopulated(MetadataRetrieve src, int n) Checks whether the given metadata object has the minimum metadata populated to successfully describe the nth Image.

Uses of MetadataRetrieve in loci.formats.gui

Methods in loci.formats.gui with parameters of type MetadataRetrieve

Modifier and Type	Method and Description
static BufferedImage	AWTImageTools.makeImage(byte[] data, boolean interleaved, MetadataRetrieve meta, int series) Creates an image from the given raw byte array, obtaining the dimensional parameters from the specified metadata object.

Uses of MetadataRetrieve in loci.formats.meta

Subinterfaces of MetadataRetrieve in loci.formats.meta

Modifier and Type	Interface and Description
interface	IMetadata

Methods in loci.formats.meta with parameters of type MetadataRetrieve

Modifier and Type	Method and Description
private static void	MetadataConverter.convertBooleanAnnotations(MetadataRetrieve src, MetadataStore dest) Convert all BooleanAnnotation attributes.
private static void	MetadataConverter.convertCommentAnnotations(MetadataRetrieve src, MetadataStore dest) Convert all CommentAnnotation attributes.
private static void	MetadataConverter.convertDatasets(MetadataRetrieve src, MetadataStore dest) Convert all Dataset attributes.
private static void	MetadataConverter.convertDoubleAnnotations(MetadataRetrieve src, MetadataStore dest) Convert all DoubleAnnotation attributes.
private static void	MetadataConverter.convertExperimenterGroups(MetadataRetrieve src, MetadataStore dest) Convert all ExperimenterGroup attributes.
private static void	MetadataConverter.convertExperimenters(MetadataRetrieve src, MetadataStore dest) Convert all Experimenter attributes.
private static void	MetadataConverter.convertExperiments(MetadataRetrieve src, MetadataStore dest) Convert all Experiment attributes.
private static void	MetadataConverter.convertFileAnnotations(MetadataRetrieve src, MetadataStore dest) Convert all FileAnnotation attributes.
private static void	MetadataConverter.convertFolders(MetadataRetrieve src, MetadataStore dest) Convert all Folder attributes.
private static void	MetadataConverter.convertImages(MetadataRetrieve src, MetadataStore dest, List<String> lightSourceIds) Convert all Image attributes.
private static List<String>	MetadataConverter.convertInstruments(MetadataRetrieve src, MetadataStore dest) Convert all Instrument attributes.
private static void	MetadataConverter.convertLightSources(MetadataRetrieve src, MetadataStore dest, int instrumentIndex, List<String> lightSourceIds) Convert all LightSource attributes for the given instrument.
private static void	MetadataConverter.convertListAnnotations(MetadataRetrieve src, MetadataStore dest) Convert all ListAnnotation attributes.
private static void	MetadataConverter.convertLongAnnotations(MetadataRetrieve src, MetadataStore dest) Convert all LongAnnotation attributes.
private static void	MetadataConverter.convertMapAnnotations(MetadataRetrieve src, MetadataStore dest) Convert all MapAnnotation attributes.
static void	MetadataConverter.convertMetadata(MetadataRetrieve src, MetadataStore dest) Copies information from a metadata retrieval object (source) into a metadata store (destination).
private static void	MetadataConverter.convertPlates(MetadataRetrieve src, MetadataStore dest) Convert all Plate attributes.
private static void	MetadataConverter.convertProjects(MetadataRetrieve src, MetadataStore dest) Convert all Project attributes.
private static void	MetadataConverter.convertROIs(MetadataRetrieve src, MetadataStore dest) Convert all ROI attributes.
private static void	MetadataConverter.convertRootAttributes(MetadataRetrieve src, MetadataStore dest) Convert all top-level attributes.
private static void	MetadataConverter.convertScreens(MetadataRetrieve src, MetadataStore dest) Convert all Screen attributes.
private static void	MetadataConverter.convertTagAnnotations(MetadataRetrieve src, MetadataStore dest) Convert all TagAnnotation attributes.
private static void	MetadataConverter.convertTermAnnotations(MetadataRetrieve src, MetadataStore dest) Convert all TermAnnotation attributes.
private static void	MetadataConverter.convertTimestampAnnotations(MetadataRetrieve src, MetadataStore dest) Convert all TimestampAnnotation attributes.
private static void	MetadataConverter.convertXMLAnnotations(MetadataRetrieve src, MetadataStore dest) Convert all XMLAnnotation attributes.

Uses of MetadataRetrieve in loci.formats.ome

Subinterfaces of MetadataRetrieve in loci.formats.ome

Modifier and Type	Interface and Description
interface	OMEXMLMetadata

Uses of MetadataRetrieve in loci.formats.out

Methods in loci.formats.out with parameters of type MetadataRetrieve

Modifier and Type	Method and Description
private int[]	ICSWriter.overwriteDimensions(MetadataRetrieve meta)

Uses of MetadataRetrieve in loci.formats.services

Methods in loci.formats.services that return MetadataRetrieve

Modifier and Type	Method and Description
MetadataRetrieve	OMEXMLService.asRetrieve(MetadataStore meta) Gets the given MetadataStore object as a MetadataRetrieve.
MetadataRetrieve	OMEXMLServiceImpl.asRetrieve(MetadataStore meta)

Methods in loci.formats.services with parameters of type MetadataRetrieve

Modifier and Type	Method and Description
MetadataStore	OMEXMLService.asStore(MetadataRetrieve meta) Gets the given MetadataRetrieve object as a MetadataStore.
MetadataStore	OMEXMLServiceImpl.asStore(MetadataRetrieve meta)
void	OMEXMLService.convertMetadata(MetadataRetrieve src, MetadataStore dest) Copies information from a metadata retrieval object (source) into a metadata store (destination).
void	OMEXMLServiceImpl.convertMetadata(MetadataRetrieve src, MetadataStore dest)
OMEXMLMetadata	OMEXMLService.getOMEMetadata(MetadataRetrieve src) Returns a OMEXMLMetadata object with the same contents as the given MetadataRetrieve, converting it if necessary.
OMEXMLMetadata	OMEXMLServiceImpl.getOMEMetadata(MetadataRetrieve src)
String	OMEXMLService.getOMEXML(MetadataRetrieve src) Extracts an OME-XML metadata string from the given metadata object, by converting to an OME-XML metadata object if necessary.
String	OMEXMLServiceImpl.getOMEXML(MetadataRetrieve src)