Uses of Interface
loci.common.IRandomAccess

Packages that use IRandomAccess

Package	Description
loci.common
loci.formats.in	Package containing Bio-Formats file format readers.

Uses of IRandomAccess in loci.common

Classes in loci.common that implement IRandomAccess

Modifier and Type	Class and Description
class	AbstractNIOHandle A wrapper for buffered NIO logic that implements the IRandomAccess interface.
class	ByteArrayHandle A wrapper for a byte array that implements the IRandomAccess interface.
class	BZip2Handle StreamHandle implementation for reading from BZip2-compressed files or byte arrays.
class	FileHandle A wrapper for RandomAccessFile that implements the IRandomAccess interface.
class	GZipHandle StreamHandle implementation for reading from gzip-compressed files or byte arrays.
class	NIOFileHandle A wrapper for buffered NIO logic that implements the IRandomAccess interface.
class	StreamHandle Abstract IRandomAccess implementation for reading from InputStreams and writing to OutputStreams.
class	URLHandle Provides random access to URLs using the IRandomAccess interface.
class	ZipHandle StreamHandle implementation for reading from Zip-compressed files or byte arrays.

Fields in loci.common declared as IRandomAccess

Modifier and Type	Field and Description
private IRandomAccess	RandomAccessOutputStream.outputFile
protected IRandomAccess	RandomAccessInputStream.raf
protected IRandomAccess	NIOInputStream.raf

Methods in loci.common that return IRandomAccess

Modifier and Type	Method and Description
static IRandomAccess	Location.getHandle(String id) Gets an IRandomAccess object that can read from the given file.
private static IRandomAccess	ZipHandle.getHandle(String file)
static IRandomAccess	Location.getHandle(String id, boolean writable) Gets an IRandomAccess object that can read from or write to the given file.
static IRandomAccess	Location.getHandle(String id, boolean writable, boolean allowArchiveHandles) Gets an IRandomAccess object that can read from or write to the given file.
static IRandomAccess	Location.getHandle(String id, boolean writable, boolean allowArchiveHandles, int bufferSize)
static IRandomAccess	Location.getMappedFile(String id) Gets the random access handle for the given id.

Methods in loci.common with parameters of type IRandomAccess

Modifier and Type	Method and Description
static void	Location.mapFile(String id, IRandomAccess ira) Maps the given id to the given IRandomAccess object.

Constructors in loci.common with parameters of type IRandomAccess

Constructor and Description
NIOInputStream(IRandomAccess handle) Constructs a random access stream around the given handle.
RandomAccessInputStream(IRandomAccess handle) Constructs a random access stream around the given handle.
RandomAccessInputStream(IRandomAccess handle, String file) Constructs a random access stream around the given handle, and with the associated file path.
RandomAccessOutputStream(IRandomAccess handle) Constructs a random access stream around the given handle.

Uses of IRandomAccess in loci.formats.in

Methods in loci.formats.in that return IRandomAccess

Modifier and Type	Method and Description
private IRandomAccess	FlexReader.getFileHandle(String flexFile)

Methods in loci.formats.in with parameters of type IRandomAccess

Modifier and Type	Method and Description
float[]	IM3Reader.FloatIM3Record.getEntries(IRandomAccess is) Return all entries as an array
int	IM3Reader.IntIM3Record.getEntry(IRandomAccess is, int index) Get the integer value at the given index
float	IM3Reader.FloatIM3Record.getEntry(IRandomAccess is, int index) Get the floating-point value at the given index
boolean	IM3Reader.BooleanIM3Record.getEntry(IRandomAccess is, int index) Get the boolean value at the given index
int	IM3Reader.IntIM3Record.getNumEntries(IRandomAccess is) Get the # of integer values in this record
int	IM3Reader.FloatIM3Record.getNumEntries(IRandomAccess is) Get the # of floating-point values in this record
int	IM3Reader.BooleanIM3Record.getNumEntries(IRandomAccess is) Get the # of boolean values in this record
String	IM3Reader.StringIM3Record.getValue(IRandomAccess is) Return the string value for this record
(package private) List<IM3Reader.IM3Record>	IM3Reader.ContainerRecord.parseChunks(IRandomAccess is) Parse and return the sub-records for the record container
private static IM3Reader.IM3Record	IM3Reader.parseRecord(IRandomAccess is) Parse an IM3 record at the current file pointer location
private void	IM3Reader.Spectrum.parseSpectrumRecord(IRandomAccess is, IM3Reader.ContainerRecord rec) Parse the spectrum record
protected static String	IM3Reader.parseString(IRandomAccess is) Parse a string from the IM3 file at the current file pointer loc
void	IM3Reader.IM3Record.writeSummary(IRandomAccess is, String indentation) Write a summary of the contents of the record
void	IM3Reader.ContainerRecord.writeSummary(IRandomAccess is, String indentation)
void	IM3Reader.IntIM3Record.writeSummary(IRandomAccess is, String indentation)
void	IM3Reader.FloatIM3Record.writeSummary(IRandomAccess is, String indentation)
void	IM3Reader.StringIM3Record.writeSummary(IRandomAccess is, String indentation)

Constructors in loci.formats.in with parameters of type IRandomAccess

Constructor and Description
IM3Reader.Spectrum(IRandomAccess is, IM3Reader.ContainerRecord rec) Construct a spectrum by parsing a Spectrum record