OMERO Demo

EastBio

Dundee, November 2022
OME Team

Outline

What is OME?
What is OMERO?
Workshop overview

OME: Interoperability

OMERO is a server with clients

Image Data - Read by Bio-Formats

Support for reading > 160 image formats
Read pixel data and metadata
Includes 5D images, HCS data, Tiled WSI images
Domains: biological, medical, general (tiff, png, etc.)

Metadata

Stored in a Relational Database
Acquisition Metadata
User-added Annotations
ROIs / Segmentations

Search

Text and Annotations indexed with Lucene
Allows keyword searches

OMERO.tables

HDF5 tables for analysis results
Flexible columns

OMERO API

Python | Java | Matlab | R | C++

Integration

Open with... Web apps

idr.openmicroscopy.org

Data management

Annotations

Viewing

Analysis

Thank you