OMERO.figure workshop

LCI Microscopy course

February 2021

OME Team

Outline

  • What is OME?
  • What is OMERO?
  • From OMERO to OMERO.figure
  • Workshop overview

OME: Interoperability

OMERO is a server with clients

Image Data - Read by Bio-Formats

  • Support for reading > 150 image formats
  • Read pixel data and metadata
  • Includes 5D images, HCS data, Tiled WSI images
  • Domains: biological, medical, general (tiff, png, etc.)

Metadata

  • Stored in a Relational Database
  • Acquisition Metadata
  • User-added Annotations
  • ROIs / Segmentations

Integration

Open with... Web apps

Retrieve workshop content

Today's workshop

Analysis with Fiji

OMERO.figure

Thank you