OMERO tutorial
German Bioimaging meeting
online meeting in Münster, July 2020
OME Team
Outline
- How does OME Team do trainings?
- How can you do OME trainings?
- How to set up a server for training?
- What should OME user know?
- Features to attract OME users?
OME trainings
- Public materials
- Available online during and after workshop
- All content is in omero-guides
- Public data on training server
- Training server set up in a transparent manner
Public materials
OMERO guide
- All real content is in OMERO guides
Training server: public data
- Images are in our downloads
- Images are from IDR idr.openmicroscopy.org
- See about how to download data from IDR on IDR webpage
Prepare training server
- For a dedicated server from scratch: see ansible examples
- You might use your existing server
- Prepare groups and users using a script
- Import data using a script
- Import metadata, annotate images using these scripts
Prepare the training: 1
- Set a date
- Book a room
- Test internet connection inside the room
- Check that OMERO.insight imports an image from the training room
- Think about what setup you need, whether you ask users to bring their laptop
Prepare the training: 2
- Plan the content of the workshop: OMERO guide walkthroughs
- Plan the content of the workshop: see past workshops
- Plan the installation of OMERO.insight if you want to show imports
- Plan the OMERO extensions and OMERO add-ons you need to install on the training machines and on the server
- Plan the 3rd party software you need to install on the training machines
What should OME user know ?
- See the OMERO guide for facility managers
- Especially see getting users started guide
- See the OMERO guide for users
Routine training and user inductions
Attracting users to OMERO
Thank you
