OMERO workshop

Trends in Microscopy
Düsseldorf, 13th March 2018
Petr Walczysko, Will Moore

Outline

• Intro: OME
• What is OMERO?
• Workshop: Using OMERO

A typical microscopy workflow

OME: Interoperability

OME: What We Do

OMERO is a server with clients

Other OMERO clients

• OMERO.iviewer
• OMERO.figure
• FPBioimage
• ImageJ http://help.openmicroscopy.org/imagej.html


• CATMAID github.com/msphan/omero-catmaid/
• Cell Profiler OMERO: Accessing images
• Orbit www.orbit.bio/omero-connection/

OMERO from your own code

• Java
• Python
• Matlab
• C++
• JavaScript

Demo

outreach.openmicroscopy.org

idr.openmicroscopy.org

Thank you

openmicroscopy.org

Google: 'OMERO Demo'
to sign-up for demo account