OMERO.figure
Technique Tapas
5th November 2014
Will Moore
OMERO.figure
Presentation Outline
OME Project
OMERO
Figures
Demo
OME
Open Microscopy Environment
OME Project
Open Source Software Project
Largely funded by Wellcome Trust
Founded in 2000 by J. Swedlow, P. Sorger, I. Goldberg
Now based in Dundee
A typical microscopy
workflow
Interoperability
OMERO is a server with clients
OMERO.insight
OMERO in CLS
nightshade.openmicroscopy.org
Available to all in CLS (Dundee Uni login)
~300 users, ~50 groups, lots of Data!
We're happy to help:
Drop-in sessions: Thursdays 10.00 - 12.00
"Getting Started" Workshops: 10th & 24th November
Figures
What's in a Figure?
Porter 2007
Problems
SLOW
Loss of Metadata:
- pixel sizes
- channel names
- rendering settings
No links between Figure and original images
OMERO.figure
OMERO.figure
Web-based application
Beta release in March 2014
Small number of CLS users, created over 300 figures
Positive feedback from several external sites
OMERO.figure 1.0.0 released October 2014
Layout
Rendering
Z-index, Time
Rotation & Zoom
Labels & Scalebars
Finally...
Save to OMERO
Export to PDF
Share url
Links to images in OMERO
Export as PDF
More information
OME:
www.openmicroscopy.org
OMERO figure:
http://will-moore.github.io/figure/
E-mail: w.moore@dundee.ac.uk
Twitter:
@openmicroscopy
@will_j_moore
Thursday morning drop-in session, 10:00 at microscopy facility
"Getting Started" Workshops: 10th & 24th November
Thank you
Jason Swedlow
OME team
Beta testers
Katharina Schleicher
Amy Gerc
Many others here and elsewhere
Iain Porter for Data