OMERO.figure

Technique Tapas

5th November 2014

Will Moore

OMERO.figure

Presentation Outline

• OME Project
• OMERO
• Figures
• Demo

OME

Open Microscopy Environment

OME Project

• Open Source Software Project
• Largely funded by Wellcome Trust
• Founded in 2000 by J. Swedlow, P. Sorger, I. Goldberg
• Now based in Dundee

A typical microscopy
workflow

Interoperability

OMERO is a server with clients

OMERO.insight

OMERO in CLS

• nightshade.openmicroscopy.org
• Available to all in CLS (Dundee Uni login)
• ~300 users, ~50 groups, lots of Data!
• We're happy to help:
  • Drop-in sessions: Thursdays 10.00 - 12.00
  • "Getting Started" Workshops: 10th & 24th November

Figures

What's in a Figure?

Problems

OMERO.figure

OMERO.figure

• Web-based application
• Beta release in March 2014
• Small number of CLS users, created over 300 figures
• Positive feedback from several external sites
• OMERO.figure 1.0.0 released October 2014

Layout

Rendering

Z-index, Time

Rotation & Zoom

Labels & Scalebars

Finally...

• Save to OMERO
• Export to PDF
• Share url
• Links to images in OMERO

Export as PDF

More information

• OME: www.openmicroscopy.org
• OMERO figure: http://will-moore.github.io/figure/
• E-mail: w.moore@dundee.ac.uk
• Twitter:
  @openmicroscopy
  @will_j_moore
• Thursday morning drop-in session, 10:00 at microscopy facility
• "Getting Started" Workshops: 10th & 24th November

Thank you

• Jason Swedlow
• OME team
• Beta testers
  • Katharina Schleicher
  • Amy Gerc
  • Many others here and elsewhere
• Iain Porter for Data