omero.gateway.scripts package

Submodules

omero.gateway.scripts.dbhelpers module

exception omero.gateway.scripts.dbhelpers.BadGroupPermissionsException

Bases: exceptions.Exception

class omero.gateway.scripts.dbhelpers.DatasetEntry(name, project, description=None, callback=None)

Bases: omero.gateway.scripts.dbhelpers.ObjectEntry

create()

description_check(d)

get(client, forceproj=None)

class omero.gateway.scripts.dbhelpers.ImageEntry(name, filename, dataset, callback=None)

Bases: omero.gateway.scripts.dbhelpers.ObjectEntry

_createWithoutPixels(client, dataset)

create()

get(client, forceds=None)

class omero.gateway.scripts.dbhelpers.ObjectEntry

Bases: object

class omero.gateway.scripts.dbhelpers.ProjectEntry(name, owner, create_group=False, group_perms=None)

Bases: omero.gateway.scripts.dbhelpers.ObjectEntry

create(client=None)

get(client=None, fromCreate=False)

class omero.gateway.scripts.dbhelpers.UserEntry(name, passwd, firstname='', middlename='', lastname='', email='', ldap=False, groupname=None, groupperms=None, groupowner=False, admin=False)

Bases: object

static _getOrCreateGroup(client, groupname, ldap=False, groupperms=None)

static addGroupToUser(client, groupname, groupperms=None)

static assert_group_perms(client, group, groupperms)

If expected permissions have been set, then this will change group permissions to those requested if not already equal. If groupperms are None, then nothing will be checked.

changePassword(client, password, rootpass)

static check_group_perms(client, group, groupperms)

If expected permissions have been set, then this will enforce equality. If groupperms are None, then nothing will be checked.

create(client, password)

fullname()

login(groupname=None)

static setGroupForSession(client, groupname, groupperms=None)

omero.gateway.scripts.dbhelpers.assertCommentAnnotation(object, ns, value)

omero.gateway.scripts.dbhelpers.bootstrap(onlyUsers=False, skipImages=True)

omero.gateway.scripts.dbhelpers.cleanup()

omero.gateway.scripts.dbhelpers.getDataset(client, alias, forceproj=None)

omero.gateway.scripts.dbhelpers.getImage(client, alias, forceds=None, autocreate=False)

omero.gateway.scripts.dbhelpers.getProject(client, alias)

omero.gateway.scripts.dbhelpers.login(alias, pw=None, groupname=None)

omero.gateway.scripts.dbhelpers.loginAsPublic()

omero.gateway.scripts.dbhelpers.loginAsRoot()

omero.gateway.scripts.dbhelpers.refreshConfig()

omero.gateway.scripts.testdb_create module

Library for gateway tests

Copyright 2009 Glencoe Software, Inc. All rights reserved. Use is subject to license terms supplied in LICENSE.txt

class omero.gateway.scripts.testdb_create.TestDBHelper

Bases: object

createPDTree(project=None, dataset=None)

Create/link a Project and/or Dataset (link them if both are specified) Existing objects can be parsed as an omero.model object(s) or blitz Wrapper objects. Otherwise new objects will be created with name str(project) or str(dataset). If project OR dataset is specified, the ProjectWrapper or DatasetWrapper is returned. If both project and dataset are specified, they will be linked and the PD-link is returned as a BlitzObjectWrapper.

@param project: omero.model.ProjectDatasetLinkI

OR omero.gateway.ProjectWrapper or name (string)

@param dataset: omero.model.DatasetI

OR omero.gateway.DatasetWrapper or name (string)

createTestImage(imageName='testImage', dataset=None, sizeX=16, sizeY=16, sizeZ=1, sizeC=1, sizeT=1)

Creates a test image of the required dimensions, where each pixel value is set to the average value of x & y. If dataset (obj or name) is specified, will be linked to image. If project (obj or name) is specified, will be created/linked to dataset (if dataset not None)

@param dataset: omero.model.DatasetI

OR DatasetWrapper OR dataset ID

doConnect()

doDisconnect()

doLogin(user=None, groupname=None)

getBadTestImage(dataset=None, autocreate=False)

getBigTestImage(dataset=None, autocreate=False)

getTestDataset(project=None)

getTestDataset2(project=None)

getTestImage(dataset=None, autocreate=False)

getTestImage2(dataset=None)

getTestProject()

getTestProject2()

getTinyTestImage(dataset=None, autocreate=False)

getTinyTestImage2(dataset=None, autocreate=False)

getTinyTestImage3(dataset=None, autocreate=False)

loginAsAdmin()

loginAsAuthor()

loginAsPublic()

loginAsUser()

prepTestDB(onlyUsers=False, skipImages=True)

setUp(skipTestDB=False, skipTestImages=True)

tearDown()

waitOnCmd(client, handle)

Module contents