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java.lang.Objectloci.formats.FormatHandler
loci.formats.FormatReader
loci.formats.in.MinimalTiffReader
ome.io.bioformats.OmeroPixelsPyramidReader
public class OmeroPixelsPyramidReader
File format reader for OMERO pixels pyramid files.
Field Summary |
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Fields inherited from class loci.formats.in.MinimalTiffReader |
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ifds, subResolutionIFDs, thumbnailIFDs, tiffParser |
Fields inherited from class loci.formats.FormatReader |
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core, domains, filterMetadata, group, hasCompanionFiles, in, indexedAsRGB, metadata, metadataOptions, metadataStore, normalizeData, saveOriginalMetadata, series, suffixNecessary, suffixSufficient, THUMBNAIL_DIMENSION |
Fields inherited from class loci.formats.FormatHandler |
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COMPRESSION_SUFFIXES, currentId, format, suffixes |
Fields inherited from interface loci.formats.IFormatReader |
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CAN_GROUP, CANNOT_GROUP, MUST_GROUP |
Constructor Summary | |
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OmeroPixelsPyramidReader()
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Method Summary | |
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void |
close()
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protected void |
initFile(String id)
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boolean |
isThisType(String name,
boolean open)
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void |
setId(String id)
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protected void |
setResolutionLevel(loci.formats.tiff.IFD ifd)
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Methods inherited from class loci.formats.in.MinimalTiffReader |
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close, get16BitLookupTable, get8BitLookupTable, getIFDs, getOptimalTileHeight, getOptimalTileWidth, getThumbnailIFDs, getThumbSizeX, getThumbSizeY, isThisType, openBytes, openThumbBytes |
Methods inherited from class loci.formats.FormatReader |
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addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, fileGroupOption, getAcquisitionMode, getAdvancedSeriesUsedFiles, getAdvancedUsedFiles, getArcType, getBinning, getBitsPerPixel, getChannelDimLengths, getChannelDimTypes, getCompression, getContrastMethod, getCoreMetadata, getCorrection, getCurrentFile, getDetectorType, getDimensionOrder, getDimensionOrder, getDomains, getEffectiveSizeC, getExperimentType, getFilamentType, getFillRule, getFilterType, getFontFamily, getFontStyle, getGlobalMeta, getGlobalMetadata, getIlluminationType, getImageCount, getImmersion, getIndex, getLaserMedium, getLaserType, getLineCap, getMarker, getMedium, getMetadata, getMetadataOptions, getMetadataStore, getMetadataStoreRoot, getMetadataValue, getMicrobeamManipulationType, getMicroscopeType, getNamingConvention, getPixelType, getPixelType, getPossibleDomains, getPulse, getRGBChannelCount, getSeries, getSeriesCount, getSeriesMeta, getSeriesMetadata, getSeriesMetadataValue, getSeriesUsedFiles, getSeriesUsedFiles, getSizeC, getSizeT, getSizeX, getSizeY, getSizeZ, getSupportedMetadataLevels, getUnderlyingReaders, getUsedFiles, getUsedFiles, getZCTCoords, hasCompanionFiles, isFalseColor, isGroupFiles, isIndexed, isInterleaved, isInterleaved, isLittleEndian, isMetadataCollected, isMetadataComplete, isMetadataFiltered, isNormalized, isOrderCertain, isOriginalMetadataPopulated, isRGB, isSingleFile, isThisType, isThisType, isThumbnailSeries, isUsedFile, makeFilterMetadata, openBytes, openBytes, openBytes, openPlane, readPlane, readPlane, setGroupFiles, setMetadataCollected, setMetadataFiltered, setMetadataOptions, setMetadataStore, setNormalized, setOriginalMetadataPopulated, setSeries |
Methods inherited from class loci.formats.FormatHandler |
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checkSuffix, checkSuffix, getFormat, getNativeDataType, getSuffixes |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface loci.formats.IFormatHandler |
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getFormat, getNativeDataType, getSuffixes |
Constructor Detail |
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public OmeroPixelsPyramidReader()
Method Detail |
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public boolean isThisType(String name, boolean open)
isThisType
in interface loci.formats.IFormatReader
isThisType
in class loci.formats.FormatReader
public void setId(String id) throws loci.formats.FormatException, IOException
setId
in interface loci.formats.IFormatHandler
setId
in class loci.formats.FormatReader
loci.formats.FormatException
IOException
public void close() throws IOException
close
in interface loci.formats.IFormatHandler
close
in class loci.formats.FormatReader
IOException
protected void initFile(String id) throws loci.formats.FormatException, IOException
initFile
in class loci.formats.in.MinimalTiffReader
loci.formats.FormatException
IOException
protected void setResolutionLevel(loci.formats.tiff.IFD ifd)
setResolutionLevel
in class loci.formats.in.MinimalTiffReader
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Version: 4.3.4-dbcbce5a-b4
Copyright © 2009 The University of Dundee. All Rights Reserved.