Uses PIL to read multiple planes from a local folder.
Planes are combined and uploaded to OMERO as new images with
additional T, C, Z dimensions.
It should be run as a local script (not via scripting service) in
order that it has access to the local users file system. Therefore need
EMAN2 or PIL installed locally.
Example usage: will$ bin/omero cecog merge
/Applications/CecogPackage/Data/Demo_data/0037/
Since this dir does not contain folders, this will upload images in
'0037' into a Dataset called Demo_data in a Project called 'Data'.
will$ bin/omero cecog merge
/Applications/CecogPackage/Data/Demo_data/
Since this dir does contain folders, this will look for images in all
subdirectories of 'Demo_data' and upload images into a Dataset called
Demo_data in a Project called 'Data'.
Images will be combined in Z, C and T according to the
MetaMorph_PlateScanPackage naming convention. E.g.
tubulin_P0037_T00005_Cgfp_Z1_S1.tiff is Point 37, Timepoint 5, Channel
gfp, Z 1. S? see
/Applications/CecogPackage/CecogAnalyzer.app/Contents/Resources/resources/naming_schemes.conf
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