Package omero :: Package util :: Module populate_roi :: Class FlexMeasurementCtx
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Class FlexMeasurementCtx

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Flex measurements are located deep within a ".res" XML file container and contain no ROI.

Instance Methods [hide private]
 
__init__(self, analysis_ctx, service_factory, original_file_provider, original_file, result_files)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature
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get_empty_columns(self, headers)
Retrieves a set of empty OmeroTables columns for the analysis results prefixed by a WellColumn to handle linked object indexes.
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get_name(self, set_of_columns=None)
Returns the name of the measurement, and a set of columns.
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parse(self)
Parses result files, returning a MeasurementParsingResult.
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parse_and_populate_roi(self, columns)
Parses and populates ROI from column data in the OMERO database.
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populate(self, columns)
Populates an OmeroTables instance backing our results and ROI linkages.
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Inherited from AbstractMeasurementCtx: create_file_annotation, get_well_images, image_from_original_file, parse_and_populate, update_rois, update_table

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]
  AREA_XPATH = './/Areas/Area'
  PARAMETER_XPATH = './/Wells/ResultParameters/Parameter'
  WELL_XPATH = './/Wells/Well'
  RESULT_XPATH = './/Result'

Inherited from AbstractMeasurementCtx: ROI_UPDATE_LIMIT

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, analysis_ctx, service_factory, original_file_provider, original_file, result_files)
(Constructor)

source code 

x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Overrides: object.__init__
(inherited documentation)

get_name(self, set_of_columns=None)

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Returns the name of the measurement, and a set of columns.

Overrides: AbstractMeasurementCtx.get_name
(inherited documentation)

parse(self)

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Parses result files, returning a MeasurementParsingResult.

Overrides: AbstractMeasurementCtx.parse
(inherited documentation)

parse_and_populate_roi(self, columns)

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Parses and populates ROI from column data in the OMERO database.

Overrides: AbstractMeasurementCtx.parse_and_populate_roi
(inherited documentation)

populate(self, columns)

source code 

Populates an OmeroTables instance backing our results and ROI linkages.

Overrides: AbstractMeasurementCtx.populate
(inherited documentation)