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java.lang.Objectloci.formats.FormatHandler
loci.formats.FormatWriter
loci.formats.out.TiffWriter
ome.io.bioformats.OmeroPixelsPyramidWriter
public class OmeroPixelsPyramidWriter
File format writer for OMERO pixels pyramid files.
Field Summary | |
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static int |
IFD_TAG_PLANE_NUMBER
TIFF tag we're using to store the Bio-Formats plane number. |
static int |
IFD_TAG_SERIES
TIFF tag we're using to store the Bio-Formats series. |
static String |
IMAGE_DESCRIPTION
Current TIFF image comment for OMERO pixels pyramid TIFFs. |
Fields inherited from class loci.formats.out.TiffWriter |
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COMPRESSION_J2K, COMPRESSION_J2K_LOSSY, COMPRESSION_JPEG, COMPRESSION_LZW, COMPRESSION_UNCOMPRESSED, in, isBigTiff, tiffSaver |
Fields inherited from class loci.formats.FormatWriter |
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cm, compression, compressionTypes, fps, initialized, interleaved, metadataRetrieve, options, out, sequential, series, validBits |
Fields inherited from class loci.formats.FormatHandler |
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COMPRESSION_SUFFIXES, currentId, format, LOGGER, suffixes |
Constructor Summary | |
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OmeroPixelsPyramidWriter()
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Method Summary | |
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void |
close()
|
protected void |
postProcess()
Performs re-compression post processing on the pixel pyramid. |
protected void |
recompressSeries(loci.formats.in.TiffReader source,
int series)
Re-compresses a source series, that is JPEG 2000 compressed, via its resolution level. |
void |
setId(String id)
|
Methods inherited from class loci.formats.out.TiffWriter |
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canDoStacks, getPixelTypes, getPlaneCount, saveBytes, saveBytes, saveBytes, setBigTiff |
Methods inherited from class loci.formats.FormatWriter |
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changeOutputFile, checkParams, getColorModel, getCompression, getCompressionTypes, getFramesPerSecond, getMetadataRetrieve, getPixelTypes, getSamplesPerPixel, getSeries, isFullPlane, isInterleaved, isSupportedType, saveBytes, saveBytes, saveBytes, savePlane, savePlane, savePlane, savePlane, seekToPlaneOffset, setCodecOptions, setColorModel, setCompression, setFramesPerSecond, setInterleaved, setMetadataRetrieve, setSeries, setValidBitsPerPixel, setWriteSequentially |
Methods inherited from class loci.formats.FormatHandler |
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checkSuffix, checkSuffix, getFormat, getNativeDataType, getSuffixes, isThisType |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface loci.formats.IFormatHandler |
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getFormat, getNativeDataType, getSuffixes, isThisType |
Field Detail |
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public static final String IMAGE_DESCRIPTION
public static final int IFD_TAG_SERIES
public static final int IFD_TAG_PLANE_NUMBER
Constructor Detail |
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public OmeroPixelsPyramidWriter()
Method Detail |
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public void close() throws IOException
close
in interface loci.formats.IFormatHandler
close
in class loci.formats.out.TiffWriter
IOException
public void setId(String id) throws loci.formats.FormatException, IOException
setId
in interface loci.formats.IFormatHandler
setId
in class loci.formats.out.TiffWriter
loci.formats.FormatException
IOException
protected void postProcess() throws IOException, loci.formats.FormatException
IOException
loci.formats.FormatException
protected void recompressSeries(loci.formats.in.TiffReader source, int series) throws loci.formats.FormatException, IOException
source
- Reader created of ourselves.series
- Target series for the re-compressed data which is the
inverse of the source resolution level.
loci.formats.FormatException
IOException
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Version: 4.3.4-dbcbce5a-b4
Copyright © 2009 The University of Dundee. All Rights Reserved.