ome.services.blitz.impl
Class OmeroMetadata

java.lang.Object
  extended by loci.formats.meta.DummyMetadata
      extended by ome.services.blitz.impl.OmeroMetadata
All Implemented Interfaces:
loci.formats.meta.IMetadata, loci.formats.meta.MetadataRetrieve, loci.formats.meta.MetadataStore

public class OmeroMetadata
extends loci.formats.meta.DummyMetadata

An implementation for MetadataStore and MetadataRetrieve that knows how to read and write the OMERO object model.

Author:
Josh Moore josh at glencoesoftware.com, Chris Allan callan at blackcat.ca, Curtis Rueden ctrueden at wisc.edu

Constructor Summary
OmeroMetadata(DatabaseIdentity db)
           
 
Method Summary
 void addImage(omero.model.Image image)
           
 int getBooleanAnnotationCount()
           
 String getBooleanAnnotationDescription(int booleanAnnotationIndex)
           
 String getBooleanAnnotationID(int booleanAnnotationIndex)
           
 String getBooleanAnnotationNamespace(int booleanAnnotationIndex)
           
 Boolean getBooleanAnnotationValue(int booleanAnnotationIndex)
           
 ome.xml.model.enums.AcquisitionMode getChannelAcquisitionMode(int imageIndex, int channelIndex)
           
 Integer getChannelColor(int imageIndex, int channelIndex)
           
 ome.xml.model.enums.ContrastMethod getChannelContrastMethod(int imageIndex, int channelIndex)
           
 int getChannelCount(int imageIndex)
           
 ome.xml.model.primitives.PositiveInteger getChannelEmissionWavelength(int imageIndex, int channelIndex)
           
 ome.xml.model.primitives.PositiveInteger getChannelExcitationWavelength(int imageIndex, int channelIndex)
           
 String getChannelFluor(int imageIndex, int channelIndex)
           
 String getChannelID(int imageIndex, int channelIndex)
           
 ome.xml.model.enums.IlluminationType getChannelIlluminationType(int imageIndex, int channelIndex)
           
 String getChannelName(int imageIndex, int channelIndex)
           
 Double getChannelNDFilter(int imageIndex, int channelIndex)
           
 Double getChannelPinholeSize(int imageIndex, int channelIndex)
           
 Integer getChannelPockelCellSetting(int imageIndex, int channelIndex)
           
 ome.xml.model.primitives.PositiveInteger getChannelSamplesPerPixel(int imageIndex, int channelIndex)
           
 int getCommentAnnotationCount()
           
 String getCommentAnnotationDescription(int commentAnnotationIndex)
           
 String getCommentAnnotationID(int commentAnnotationIndex)
           
 String getCommentAnnotationNamespace(int commentAnnotationIndex)
           
 String getCommentAnnotationValue(int commentAnnotationIndex)
           
 int getDoubleAnnotationCount()
           
 String getDoubleAnnotationDescription(int doubleAnnotationIndex)
           
 String getDoubleAnnotationID(int doubleAnnotationIndex)
           
 String getDoubleAnnotationNamespace(int doubleAnnotationIndex)
           
 Double getDoubleAnnotationValue(int doubleAnnotationIndex)
           
 omero.model.Image getImage(int i)
           
 String getImageAcquiredDate(int imageIndex)
           
 String getImageAnnotationRef(int imageIndex, int annotationRefIndex)
           
 int getImageAnnotationRefCount(int imageIndex)
           
 int getImageCount()
           
 String getImageDescription(int imageIndex)
           
 String getImageID(int imageIndex)
           
 String getImageName(int imageIndex)
           
 int getLongAnnotationCount()
           
 String getLongAnnotationDescription(int longAnnotationIndex)
           
 String getLongAnnotationID(int longAnnotationIndex)
           
 String getLongAnnotationNamespace(int longAnnotationIndex)
           
 Long getLongAnnotationValue(int longAnnotationIndex)
           
 Boolean getPixelsBinDataBigEndian(int imageIndex, int binDataIndex)
           
 ome.xml.model.enums.DimensionOrder getPixelsDimensionOrder(int imageIndex)
           
 String getPixelsID(int imageIndex)
           
 ome.xml.model.primitives.PositiveFloat getPixelsPhysicalSizeX(int imageIndex)
           
 ome.xml.model.primitives.PositiveFloat getPixelsPhysicalSizeY(int imageIndex)
           
 ome.xml.model.primitives.PositiveFloat getPixelsPhysicalSizeZ(int imageIndex)
           
 ome.xml.model.primitives.PositiveInteger getPixelsSizeC(int imageIndex)
           
 ome.xml.model.primitives.PositiveInteger getPixelsSizeT(int imageIndex)
           
 ome.xml.model.primitives.PositiveInteger getPixelsSizeX(int imageIndex)
           
 ome.xml.model.primitives.PositiveInteger getPixelsSizeY(int imageIndex)
           
 ome.xml.model.primitives.PositiveInteger getPixelsSizeZ(int imageIndex)
           
 Double getPixelsTimeIncrement(int imageIndex)
           
 ome.xml.model.enums.PixelType getPixelsType(int imageIndex)
           
 int getPlaneCount(int imageIndex)
           
 Double getPlaneDeltaT(int imageIndex, int planeIndex)
           
 Double getPlaneExposureTime(int imageIndex, int planeIndex)
           
 Double getPlanePositionX(int imageIndex, int planeIndex)
           
 Double getPlanePositionY(int imageIndex, int planeIndex)
           
 Double getPlanePositionZ(int imageIndex, int planeIndex)
           
 ome.xml.model.primitives.NonNegativeInteger getPlaneTheC(int imageIndex, int planeIndex)
           
 ome.xml.model.primitives.NonNegativeInteger getPlaneTheT(int imageIndex, int planeIndex)
           
 ome.xml.model.primitives.NonNegativeInteger getPlaneTheZ(int imageIndex, int planeIndex)
           
 Object getRoot()
           
 int getTagAnnotationCount()
           
 String getTagAnnotationDescription(int tagAnnotationIndex)
           
 String getTagAnnotationID(int tagAnnotationIndex)
           
 String getTagAnnotationNamespace(int tagAnnotationIndex)
           
 String getTagAnnotationValue(int tagAnnotationIndex)
           
 int getTermAnnotationCount()
           
 String getTermAnnotationDescription(int termAnnotationIndex)
           
 String getTermAnnotationID(int termAnnotationIndex)
           
 String getTermAnnotationNamespace(int termAnnotationIndex)
           
 String getTermAnnotationValue(int termAnnotationIndex)
           
 int getTimestampAnnotationCount()
           
 String getTimestampAnnotationDescription(int timestampAnnotationIndex)
           
 String getTimestampAnnotationID(int timestampAnnotationIndex)
           
 String getTimestampAnnotationNamespace(int timestampAnnotationIndex)
           
 String getTimestampAnnotationValue(int timestampAnnotationIndex)
           
 int getXMLAnnotationCount()
           
 String getXMLAnnotationDescription(int XMLAnnotationIndex)
           
 String getXMLAnnotationID(int XMLAnnotationIndex)
           
 String getXMLAnnotationNamespace(int XMLAnnotationIndex)
           
 String getXMLAnnotationValue(int XMLAnnotationIndex)
           
 String handleLsid(omero.model.IObject obj)
           
 void initialize(org.hibernate.Session session)
           
 int sizeImages()
           
 
Methods inherited from class loci.formats.meta.DummyMetadata
createRoot, getArcID, getArcLotNumber, getArcManufacturer, getArcModel, getArcPower, getArcSerialNumber, getArcType, getBinaryOnlyMetadataFile, getBinaryOnlyUUID, getBooleanAnnotationAnnotationRef, getChannelAnnotationRef, getChannelAnnotationRefCount, getChannelFilterSetRef, getChannelLightSourceSettingsAttenuation, getChannelLightSourceSettingsID, getChannelLightSourceSettingsWavelength, getChannelOTFRef, getCommentAnnotationAnnotationRef, getDatasetAnnotationRef, getDatasetAnnotationRefCount, getDatasetCount, getDatasetDescription, getDatasetExperimenterRef, getDatasetGroupRef, getDatasetID, getDatasetName, getDatasetProjectRef, getDatasetRefCount, getDetectorAmplificationGain, getDetectorCount, getDetectorGain, getDetectorID, getDetectorLotNumber, getDetectorManufacturer, getDetectorModel, getDetectorOffset, getDetectorSerialNumber, getDetectorSettingsBinning, getDetectorSettingsGain, getDetectorSettingsID, getDetectorSettingsOffset, getDetectorSettingsReadOutRate, getDetectorSettingsVoltage, getDetectorType, getDetectorVoltage, getDetectorZoom, getDichroicCount, getDichroicID, getDichroicLotNumber, getDichroicManufacturer, getDichroicModel, getDichroicSerialNumber, getDoubleAnnotationAnnotationRef, getEllipseDescription, getEllipseFill, getEllipseFontSize, getEllipseID, getEllipseLabel, getEllipseName, getEllipseRadiusX, getEllipseRadiusY, getEllipseStroke, getEllipseStrokeDashArray, getEllipseStrokeWidth, getEllipseTheC, getEllipseTheT, getEllipseTheZ, getEllipseTransform, getEllipseX, getEllipseY, getExperimentCount, getExperimentDescription, getExperimenterAnnotationRef, getExperimenterAnnotationRefCount, getExperimenterCount, getExperimenterDisplayName, getExperimenterEmail, getExperimenterFirstName, getExperimenterGroupRef, getExperimenterGroupRefCount, getExperimenterID, getExperimenterInstitution, getExperimenterLastName, getExperimenterMiddleName, getExperimenterUserName, getExperimentExperimenterRef, getExperimentID, getExperimentType, getFilamentID, getFilamentLotNumber, getFilamentManufacturer, getFilamentModel, getFilamentPower, getFilamentSerialNumber, getFilamentType, getFileAnnotationAnnotationRef, getFileAnnotationBinaryFileFileName, getFileAnnotationBinaryFileMIMEType, getFileAnnotationBinaryFileSize, getFileAnnotationCount, getFileAnnotationDescription, getFileAnnotationID, getFileAnnotationNamespace, getFilterCount, getFilterFilterWheel, getFilterID, getFilterLotNumber, getFilterManufacturer, getFilterModel, getFilterSerialNumber, getFilterSetCount, getFilterSetDichroicRef, getFilterSetEmissionFilterRef, getFilterSetEmissionFilterRefCount, getFilterSetExcitationFilterRef, getFilterSetExcitationFilterRefCount, getFilterSetID, getFilterSetLotNumber, getFilterSetManufacturer, getFilterSetModel, getFilterSetSerialNumber, getFilterType, getGroupContact, getGroupCount, getGroupDescription, getGroupID, getGroupLeader, getGroupName, getImageDatasetRef, getImageExperimenterRef, getImageExperimentRef, getImageGroupRef, getImageInstrumentRef, getImageMicrobeamManipulationRef, getImageObjectiveSettingsCorrectionCollar, getImageObjectiveSettingsID, getImageObjectiveSettingsMedium, getImageObjectiveSettingsRefractiveIndex, getImageROIRef, getImageROIRefCount, getImagingEnvironmentAirPressure, getImagingEnvironmentCO2Percent, getImagingEnvironmentHumidity, getImagingEnvironmentTemperature, getInstrumentCount, getInstrumentID, getLaserFrequencyMultiplication, getLaserID, getLaserLaserMedium, getLaserLotNumber, getLaserManufacturer, getLaserModel, getLaserPockelCell, getLaserPower, getLaserPulse, getLaserPump, getLaserRepetitionRate, getLaserSerialNumber, getLaserTuneable, getLaserType, getLaserWavelength, getLightEmittingDiodeID, getLightEmittingDiodeLotNumber, getLightEmittingDiodeManufacturer, getLightEmittingDiodeModel, getLightEmittingDiodePower, getLightEmittingDiodeSerialNumber, getLightPathDichroicRef, getLightPathEmissionFilterRef, getLightPathEmissionFilterRefCount, getLightPathExcitationFilterRef, getLightPathExcitationFilterRefCount, getLightSourceCount, getLightSourceType, getLineDescription, getLineFill, getLineFontSize, getLineID, getLineLabel, getLineName, getLineStroke, getLineStrokeDashArray, getLineStrokeWidth, getLineTheC, getLineTheT, getLineTheZ, getLineTransform, getLineX1, getLineX2, getLineY1, getLineY2, getListAnnotationAnnotationRef, getListAnnotationCount, getListAnnotationDescription, getListAnnotationID, getListAnnotationNamespace, getLongAnnotationAnnotationRef, getMaskDescription, getMaskFill, getMaskFontSize, getMaskHeight, getMaskID, getMaskLabel, getMaskName, getMaskStroke, getMaskStrokeDashArray, getMaskStrokeWidth, getMaskTheC, getMaskTheT, getMaskTheZ, getMaskTransform, getMaskWidth, getMaskX, getMaskY, getMicrobeamManipulationCount, getMicrobeamManipulationDescription, getMicrobeamManipulationExperimenterRef, getMicrobeamManipulationID, getMicrobeamManipulationLightSourceSettingsAttenuation, getMicrobeamManipulationLightSourceSettingsCount, getMicrobeamManipulationLightSourceSettingsID, getMicrobeamManipulationLightSourceSettingsWavelength, getMicrobeamManipulationRefCount, getMicrobeamManipulationROIRef, getMicrobeamManipulationROIRefCount, getMicrobeamManipulationType, getMicroscopeLotNumber, getMicroscopeManufacturer, getMicroscopeModel, getMicroscopeSerialNumber, getMicroscopeType, getObjectiveCalibratedMagnification, getObjectiveCorrection, getObjectiveCount, getObjectiveID, getObjectiveImmersion, getObjectiveIris, getObjectiveLensNA, getObjectiveLotNumber, getObjectiveManufacturer, getObjectiveModel, getObjectiveNominalMagnification, getObjectiveSerialNumber, getObjectiveWorkingDistance, getOTFBinaryFileFileName, getOTFBinaryFileMIMEType, getOTFBinaryFileSize, getOTFCount, getOTFFilterSetRef, getOTFID, getOTFObjectiveSettingsCorrectionCollar, getOTFObjectiveSettingsID, getOTFObjectiveSettingsMedium, getOTFObjectiveSettingsRefractiveIndex, getOTFOpticalAxisAveraged, getOTFSizeX, getOTFSizeY, getOTFType, getPathDefinition, getPathDescription, getPathFill, getPathFontSize, getPathID, getPathLabel, getPathName, getPathStroke, getPathStrokeDashArray, getPathStrokeWidth, getPathTheC, getPathTheT, getPathTheZ, getPathTransform, getPixelsAnnotationRef, getPixelsAnnotationRefCount, getPixelsBinDataCount, getPlaneAnnotationRef, getPlaneAnnotationRefCount, getPlaneHashSHA1, getPlateAcquisitionAnnotationRef, getPlateAcquisitionAnnotationRefCount, getPlateAcquisitionCount, getPlateAcquisitionDescription, getPlateAcquisitionEndTime, getPlateAcquisitionID, getPlateAcquisitionMaximumFieldCount, getPlateAcquisitionName, getPlateAcquisitionStartTime, getPlateAcquisitionWellSampleRef, getPlateAnnotationRef, getPlateAnnotationRefCount, getPlateColumnNamingConvention, getPlateColumns, getPlateCount, getPlateDescription, getPlateExternalIdentifier, getPlateID, getPlateName, getPlateRefCount, getPlateRowNamingConvention, getPlateRows, getPlateScreenRef, getPlateStatus, getPlateWellOriginX, getPlateWellOriginY, getPointDescription, getPointFill, getPointFontSize, getPointID, getPointLabel, getPointName, getPointStroke, getPointStrokeDashArray, getPointStrokeWidth, getPointTheC, getPointTheT, getPointTheZ, getPointTransform, getPointX, getPointY, getPolylineClosed, getPolylineDescription, getPolylineFill, getPolylineFontSize, getPolylineID, getPolylineLabel, getPolylineName, getPolylinePoints, getPolylineStroke, getPolylineStrokeDashArray, getPolylineStrokeWidth, getPolylineTheC, getPolylineTheT, getPolylineTheZ, getPolylineTransform, getProjectAnnotationRef, getProjectAnnotationRefCount, getProjectCount, getProjectDescription, getProjectExperimenterRef, getProjectGroupRef, getProjectID, getProjectName, getProjectRefCount, getReagentAnnotationRef, getReagentAnnotationRefCount, getReagentCount, getReagentDescription, getReagentID, getReagentName, getReagentReagentIdentifier, getRectangleDescription, getRectangleFill, getRectangleFontSize, getRectangleHeight, getRectangleID, getRectangleLabel, getRectangleName, getRectangleStroke, getRectangleStrokeDashArray, getRectangleStrokeWidth, getRectangleTheC, getRectangleTheT, getRectangleTheZ, getRectangleTransform, getRectangleWidth, getRectangleX, getRectangleY, getROIAnnotationRef, getROIAnnotationRefCount, getROICount, getROIDescription, getROIID, getROIName, getROINamespace, getScreenAnnotationRef, getScreenAnnotationRefCount, getScreenCount, getScreenDescription, getScreenID, getScreenName, getScreenPlateRef, getScreenProtocolDescription, getScreenProtocolIdentifier, getScreenReagentSetDescription, getScreenReagentSetIdentifier, getScreenRefCount, getScreenType, getShapeCount, getStageLabelName, getStageLabelX, getStageLabelY, getStageLabelZ, getTagAnnotationAnnotationRef, getTermAnnotationAnnotationRef, getTextDescription, getTextFill, getTextFontSize, getTextID, getTextLabel, getTextName, getTextStroke, getTextStrokeDashArray, getTextStrokeWidth, getTextTheC, getTextTheT, getTextTheZ, getTextTransform, getTextValue, getTextX, getTextY, getTiffDataCount, getTiffDataFirstC, getTiffDataFirstT, getTiffDataFirstZ, getTiffDataIFD, getTiffDataPlaneCount, getTimestampAnnotationAnnotationRef, getTransmittanceRangeCutIn, getTransmittanceRangeCutInTolerance, getTransmittanceRangeCutOut, getTransmittanceRangeCutOutTolerance, getTransmittanceRangeTransmittance, getUUID, getUUIDFileName, getUUIDValue, getWellAnnotationRef, getWellAnnotationRefCount, getWellColor, getWellColumn, getWellCount, getWellExternalDescription, getWellExternalIdentifier, getWellID, getWellReagentRef, getWellRow, getWellSampleAnnotationRef, getWellSampleAnnotationRefCount, getWellSampleCount, getWellSampleID, getWellSampleImageRef, getWellSampleIndex, getWellSamplePositionX, getWellSamplePositionY, getWellSampleRefCount, getWellSampleTimepoint, getWellStatus, getXMLAnnotationAnnotationRef, setArcID, setArcLotNumber, setArcManufacturer, setArcModel, setArcPower, setArcSerialNumber, setArcType, setBinaryOnlyMetadataFile, setBinaryOnlyUUID, setBooleanAnnotationAnnotationRef, setBooleanAnnotationDescription, setBooleanAnnotationID, setBooleanAnnotationNamespace, setBooleanAnnotationValue, setChannelAcquisitionMode, setChannelAnnotationRef, setChannelColor, setChannelContrastMethod, setChannelEmissionWavelength, setChannelExcitationWavelength, setChannelFilterSetRef, setChannelFluor, setChannelID, setChannelIlluminationType, setChannelLightSourceSettingsAttenuation, setChannelLightSourceSettingsID, setChannelLightSourceSettingsWavelength, setChannelName, setChannelNDFilter, setChannelOTFRef, setChannelPinholeSize, setChannelPockelCellSetting, setChannelSamplesPerPixel, setCommentAnnotationAnnotationRef, setCommentAnnotationDescription, setCommentAnnotationID, setCommentAnnotationNamespace, setCommentAnnotationValue, setDatasetAnnotationRef, setDatasetDescription, setDatasetExperimenterRef, setDatasetGroupRef, setDatasetID, setDatasetName, setDatasetProjectRef, setDetectorAmplificationGain, setDetectorGain, setDetectorID, setDetectorLotNumber, setDetectorManufacturer, setDetectorModel, setDetectorOffset, setDetectorSerialNumber, setDetectorSettingsBinning, setDetectorSettingsGain, setDetectorSettingsID, setDetectorSettingsOffset, setDetectorSettingsReadOutRate, setDetectorSettingsVoltage, setDetectorType, setDetectorVoltage, setDetectorZoom, setDichroicID, setDichroicLotNumber, setDichroicManufacturer, setDichroicModel, setDichroicSerialNumber, setDoubleAnnotationAnnotationRef, setDoubleAnnotationDescription, setDoubleAnnotationID, setDoubleAnnotationNamespace, setDoubleAnnotationValue, setEllipseDescription, setEllipseFill, setEllipseFontSize, setEllipseID, setEllipseLabel, setEllipseName, setEllipseRadiusX, setEllipseRadiusY, setEllipseStroke, setEllipseStrokeDashArray, setEllipseStrokeWidth, setEllipseTheC, setEllipseTheT, setEllipseTheZ, setEllipseTransform, setEllipseX, setEllipseY, setExperimentDescription, setExperimenterAnnotationRef, setExperimenterDisplayName, setExperimenterEmail, setExperimenterFirstName, setExperimenterGroupRef, setExperimenterID, setExperimenterInstitution, setExperimenterLastName, setExperimenterMiddleName, setExperimenterUserName, setExperimentExperimenterRef, setExperimentID, setExperimentType, setFilamentID, setFilamentLotNumber, setFilamentManufacturer, setFilamentModel, setFilamentPower, setFilamentSerialNumber, setFilamentType, setFileAnnotationAnnotationRef, setFileAnnotationBinaryFileFileName, setFileAnnotationBinaryFileMIMEType, setFileAnnotationBinaryFileSize, setFileAnnotationDescription, setFileAnnotationID, setFileAnnotationNamespace, setFilterFilterWheel, setFilterID, setFilterLotNumber, setFilterManufacturer, setFilterModel, setFilterSerialNumber, setFilterSetDichroicRef, setFilterSetEmissionFilterRef, setFilterSetExcitationFilterRef, setFilterSetID, setFilterSetLotNumber, setFilterSetManufacturer, setFilterSetModel, setFilterSetSerialNumber, setFilterType, setGroupContact, setGroupDescription, setGroupID, setGroupLeader, setGroupName, setImageAcquiredDate, setImageAnnotationRef, setImageDatasetRef, setImageDescription, setImageExperimenterRef, setImageExperimentRef, setImageGroupRef, setImageID, setImageInstrumentRef, setImageMicrobeamManipulationRef, setImageName, setImageObjectiveSettingsCorrectionCollar, setImageObjectiveSettingsID, setImageObjectiveSettingsMedium, setImageObjectiveSettingsRefractiveIndex, setImageROIRef, setImagingEnvironmentAirPressure, setImagingEnvironmentCO2Percent, setImagingEnvironmentHumidity, setImagingEnvironmentTemperature, setInstrumentID, setLaserFrequencyMultiplication, setLaserID, setLaserLaserMedium, setLaserLotNumber, setLaserManufacturer, setLaserModel, setLaserPockelCell, setLaserPower, setLaserPulse, setLaserPump, setLaserRepetitionRate, setLaserSerialNumber, setLaserTuneable, setLaserType, setLaserWavelength, setLightEmittingDiodeID, setLightEmittingDiodeLotNumber, setLightEmittingDiodeManufacturer, setLightEmittingDiodeModel, setLightEmittingDiodePower, setLightEmittingDiodeSerialNumber, setLightPathDichroicRef, setLightPathEmissionFilterRef, setLightPathExcitationFilterRef, setLineDescription, setLineFill, setLineFontSize, setLineID, setLineLabel, setLineName, setLineStroke, setLineStrokeDashArray, setLineStrokeWidth, setLineTheC, setLineTheT, setLineTheZ, setLineTransform, setLineX1, setLineX2, setLineY1, setLineY2, setListAnnotationAnnotationRef, setListAnnotationDescription, setListAnnotationID, setListAnnotationNamespace, setLongAnnotationAnnotationRef, setLongAnnotationDescription, setLongAnnotationID, setLongAnnotationNamespace, setLongAnnotationValue, setMaskBinData, setMaskDescription, setMaskFill, setMaskFontSize, setMaskHeight, setMaskID, setMaskLabel, setMaskName, setMaskStroke, setMaskStrokeDashArray, setMaskStrokeWidth, setMaskTheC, setMaskTheT, setMaskTheZ, setMaskTransform, setMaskWidth, setMaskX, setMaskY, setMicrobeamManipulationDescription, setMicrobeamManipulationExperimenterRef, setMicrobeamManipulationID, setMicrobeamManipulationLightSourceSettingsAttenuation, setMicrobeamManipulationLightSourceSettingsID, setMicrobeamManipulationLightSourceSettingsWavelength, setMicrobeamManipulationROIRef, setMicrobeamManipulationType, setMicroscopeLotNumber, setMicroscopeManufacturer, setMicroscopeModel, setMicroscopeSerialNumber, setMicroscopeType, setObjectiveCalibratedMagnification, setObjectiveCorrection, setObjectiveID, setObjectiveImmersion, setObjectiveIris, setObjectiveLensNA, setObjectiveLotNumber, setObjectiveManufacturer, setObjectiveModel, setObjectiveNominalMagnification, setObjectiveSerialNumber, setObjectiveWorkingDistance, setOTFBinaryFileFileName, setOTFBinaryFileMIMEType, setOTFBinaryFileSize, setOTFFilterSetRef, setOTFID, setOTFObjectiveSettingsCorrectionCollar, setOTFObjectiveSettingsID, setOTFObjectiveSettingsMedium, setOTFObjectiveSettingsRefractiveIndex, setOTFOpticalAxisAveraged, setOTFSizeX, setOTFSizeY, setOTFType, setPathDefinition, setPathDescription, setPathFill, setPathFontSize, setPathID, setPathLabel, setPathName, setPathStroke, setPathStrokeDashArray, setPathStrokeWidth, setPathTheC, setPathTheT, setPathTheZ, setPathTransform, setPixelsAnnotationRef, setPixelsBinDataBigEndian, setPixelsDimensionOrder, setPixelsID, setPixelsPhysicalSizeX, setPixelsPhysicalSizeY, setPixelsPhysicalSizeZ, setPixelsSizeC, setPixelsSizeT, setPixelsSizeX, setPixelsSizeY, setPixelsSizeZ, setPixelsTimeIncrement, setPixelsType, setPlaneAnnotationRef, setPlaneDeltaT, setPlaneExposureTime, setPlaneHashSHA1, setPlanePositionX, setPlanePositionY, setPlanePositionZ, setPlaneTheC, setPlaneTheT, setPlaneTheZ, setPlateAcquisitionAnnotationRef, setPlateAcquisitionDescription, setPlateAcquisitionEndTime, setPlateAcquisitionID, setPlateAcquisitionMaximumFieldCount, setPlateAcquisitionName, setPlateAcquisitionStartTime, setPlateAcquisitionWellSampleRef, setPlateAnnotationRef, setPlateColumnNamingConvention, setPlateColumns, setPlateDescription, setPlateExternalIdentifier, setPlateID, setPlateName, setPlateRowNamingConvention, setPlateRows, setPlateScreenRef, setPlateStatus, setPlateWellOriginX, setPlateWellOriginY, setPointDescription, setPointFill, setPointFontSize, setPointID, setPointLabel, setPointName, setPointStroke, setPointStrokeDashArray, setPointStrokeWidth, setPointTheC, setPointTheT, setPointTheZ, setPointTransform, setPointX, setPointY, setPolylineClosed, setPolylineDescription, setPolylineFill, setPolylineFontSize, setPolylineID, setPolylineLabel, setPolylineName, setPolylinePoints, setPolylineStroke, setPolylineStrokeDashArray, setPolylineStrokeWidth, setPolylineTheC, setPolylineTheT, setPolylineTheZ, setPolylineTransform, setProjectAnnotationRef, setProjectDescription, setProjectExperimenterRef, setProjectGroupRef, setProjectID, setProjectName, setReagentAnnotationRef, setReagentDescription, setReagentID, setReagentName, setReagentReagentIdentifier, setRectangleDescription, setRectangleFill, setRectangleFontSize, setRectangleHeight, setRectangleID, setRectangleLabel, setRectangleName, setRectangleStroke, setRectangleStrokeDashArray, setRectangleStrokeWidth, setRectangleTheC, setRectangleTheT, setRectangleTheZ, setRectangleTransform, setRectangleWidth, setRectangleX, setRectangleY, setROIAnnotationRef, setROIDescription, setROIID, setROIName, setROINamespace, setRoot, setScreenAnnotationRef, setScreenDescription, setScreenID, setScreenName, setScreenPlateRef, setScreenProtocolDescription, setScreenProtocolIdentifier, setScreenReagentSetDescription, setScreenReagentSetIdentifier, setScreenType, setStageLabelName, setStageLabelX, setStageLabelY, setStageLabelZ, setTagAnnotationAnnotationRef, setTagAnnotationDescription, setTagAnnotationID, setTagAnnotationNamespace, setTagAnnotationValue, setTermAnnotationAnnotationRef, setTermAnnotationDescription, setTermAnnotationID, setTermAnnotationNamespace, setTermAnnotationValue, setTextDescription, setTextFill, setTextFontSize, setTextID, setTextLabel, setTextName, setTextStroke, setTextStrokeDashArray, setTextStrokeWidth, setTextTheC, setTextTheT, setTextTheZ, setTextTransform, setTextValue, setTextX, setTextY, setTiffDataFirstC, setTiffDataFirstT, setTiffDataFirstZ, setTiffDataIFD, setTiffDataPlaneCount, setTimestampAnnotationAnnotationRef, setTimestampAnnotationDescription, setTimestampAnnotationID, setTimestampAnnotationNamespace, setTimestampAnnotationValue, setTransmittanceRangeCutIn, setTransmittanceRangeCutInTolerance, setTransmittanceRangeCutOut, setTransmittanceRangeCutOutTolerance, setTransmittanceRangeTransmittance, setUUID, setUUIDFileName, setUUIDValue, setWellAnnotationRef, setWellColor, setWellColumn, setWellExternalDescription, setWellExternalIdentifier, setWellID, setWellReagentRef, setWellRow, setWellSampleAnnotationRef, setWellSampleID, setWellSampleImageRef, setWellSampleIndex, setWellSamplePositionX, setWellSamplePositionY, setWellSampleTimepoint, setWellStatus, setXMLAnnotationAnnotationRef, setXMLAnnotationDescription, setXMLAnnotationID, setXMLAnnotationNamespace, setXMLAnnotationValue
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

OmeroMetadata

public OmeroMetadata(DatabaseIdentity db)
Method Detail

getRoot

public Object getRoot()
Specified by:
getRoot in interface loci.formats.meta.MetadataStore
Overrides:
getRoot in class loci.formats.meta.DummyMetadata

addImage

public void addImage(omero.model.Image image)

getImage

public omero.model.Image getImage(int i)

sizeImages

public int sizeImages()

handleLsid

public String handleLsid(omero.model.IObject obj)

initialize

public void initialize(org.hibernate.Session session)

getImageAcquiredDate

public String getImageAcquiredDate(int imageIndex)
Specified by:
getImageAcquiredDate in interface loci.formats.meta.MetadataRetrieve
Overrides:
getImageAcquiredDate in class loci.formats.meta.DummyMetadata

getImageAnnotationRef

public String getImageAnnotationRef(int imageIndex,
                                    int annotationRefIndex)
Specified by:
getImageAnnotationRef in interface loci.formats.meta.MetadataRetrieve
Overrides:
getImageAnnotationRef in class loci.formats.meta.DummyMetadata

getImageAnnotationRefCount

public int getImageAnnotationRefCount(int imageIndex)
Specified by:
getImageAnnotationRefCount in interface loci.formats.meta.MetadataRetrieve
Overrides:
getImageAnnotationRefCount in class loci.formats.meta.DummyMetadata

getImageCount

public int getImageCount()
Specified by:
getImageCount in interface loci.formats.meta.MetadataRetrieve
Overrides:
getImageCount in class loci.formats.meta.DummyMetadata

getImageDescription

public String getImageDescription(int imageIndex)
Specified by:
getImageDescription in interface loci.formats.meta.MetadataRetrieve
Overrides:
getImageDescription in class loci.formats.meta.DummyMetadata

getImageID

public String getImageID(int imageIndex)
Specified by:
getImageID in interface loci.formats.meta.MetadataRetrieve
Overrides:
getImageID in class loci.formats.meta.DummyMetadata

getImageName

public String getImageName(int imageIndex)
Specified by:
getImageName in interface loci.formats.meta.MetadataRetrieve
Overrides:
getImageName in class loci.formats.meta.DummyMetadata

getPixelsBinDataBigEndian

public Boolean getPixelsBinDataBigEndian(int imageIndex,
                                         int binDataIndex)
Specified by:
getPixelsBinDataBigEndian in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPixelsBinDataBigEndian in class loci.formats.meta.DummyMetadata

getPixelsDimensionOrder

public ome.xml.model.enums.DimensionOrder getPixelsDimensionOrder(int imageIndex)
Specified by:
getPixelsDimensionOrder in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPixelsDimensionOrder in class loci.formats.meta.DummyMetadata

getPixelsID

public String getPixelsID(int imageIndex)
Specified by:
getPixelsID in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPixelsID in class loci.formats.meta.DummyMetadata

getPixelsPhysicalSizeX

public ome.xml.model.primitives.PositiveFloat getPixelsPhysicalSizeX(int imageIndex)
Specified by:
getPixelsPhysicalSizeX in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPixelsPhysicalSizeX in class loci.formats.meta.DummyMetadata

getPixelsPhysicalSizeY

public ome.xml.model.primitives.PositiveFloat getPixelsPhysicalSizeY(int imageIndex)
Specified by:
getPixelsPhysicalSizeY in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPixelsPhysicalSizeY in class loci.formats.meta.DummyMetadata

getPixelsPhysicalSizeZ

public ome.xml.model.primitives.PositiveFloat getPixelsPhysicalSizeZ(int imageIndex)
Specified by:
getPixelsPhysicalSizeZ in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPixelsPhysicalSizeZ in class loci.formats.meta.DummyMetadata

getPixelsSizeC

public ome.xml.model.primitives.PositiveInteger getPixelsSizeC(int imageIndex)
Specified by:
getPixelsSizeC in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPixelsSizeC in class loci.formats.meta.DummyMetadata

getPixelsSizeT

public ome.xml.model.primitives.PositiveInteger getPixelsSizeT(int imageIndex)
Specified by:
getPixelsSizeT in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPixelsSizeT in class loci.formats.meta.DummyMetadata

getPixelsSizeX

public ome.xml.model.primitives.PositiveInteger getPixelsSizeX(int imageIndex)
Specified by:
getPixelsSizeX in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPixelsSizeX in class loci.formats.meta.DummyMetadata

getPixelsSizeY

public ome.xml.model.primitives.PositiveInteger getPixelsSizeY(int imageIndex)
Specified by:
getPixelsSizeY in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPixelsSizeY in class loci.formats.meta.DummyMetadata

getPixelsSizeZ

public ome.xml.model.primitives.PositiveInteger getPixelsSizeZ(int imageIndex)
Specified by:
getPixelsSizeZ in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPixelsSizeZ in class loci.formats.meta.DummyMetadata

getPixelsTimeIncrement

public Double getPixelsTimeIncrement(int imageIndex)
Specified by:
getPixelsTimeIncrement in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPixelsTimeIncrement in class loci.formats.meta.DummyMetadata

getPixelsType

public ome.xml.model.enums.PixelType getPixelsType(int imageIndex)
Specified by:
getPixelsType in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPixelsType in class loci.formats.meta.DummyMetadata

getChannelAcquisitionMode

public ome.xml.model.enums.AcquisitionMode getChannelAcquisitionMode(int imageIndex,
                                                                     int channelIndex)
Specified by:
getChannelAcquisitionMode in interface loci.formats.meta.MetadataRetrieve
Overrides:
getChannelAcquisitionMode in class loci.formats.meta.DummyMetadata

getChannelColor

public Integer getChannelColor(int imageIndex,
                               int channelIndex)
Specified by:
getChannelColor in interface loci.formats.meta.MetadataRetrieve
Overrides:
getChannelColor in class loci.formats.meta.DummyMetadata

getChannelContrastMethod

public ome.xml.model.enums.ContrastMethod getChannelContrastMethod(int imageIndex,
                                                                   int channelIndex)
Specified by:
getChannelContrastMethod in interface loci.formats.meta.MetadataRetrieve
Overrides:
getChannelContrastMethod in class loci.formats.meta.DummyMetadata

getChannelCount

public int getChannelCount(int imageIndex)
Specified by:
getChannelCount in interface loci.formats.meta.MetadataRetrieve
Overrides:
getChannelCount in class loci.formats.meta.DummyMetadata

getChannelEmissionWavelength

public ome.xml.model.primitives.PositiveInteger getChannelEmissionWavelength(int imageIndex,
                                                                             int channelIndex)
Specified by:
getChannelEmissionWavelength in interface loci.formats.meta.MetadataRetrieve
Overrides:
getChannelEmissionWavelength in class loci.formats.meta.DummyMetadata

getChannelExcitationWavelength

public ome.xml.model.primitives.PositiveInteger getChannelExcitationWavelength(int imageIndex,
                                                                               int channelIndex)
Specified by:
getChannelExcitationWavelength in interface loci.formats.meta.MetadataRetrieve
Overrides:
getChannelExcitationWavelength in class loci.formats.meta.DummyMetadata

getChannelFluor

public String getChannelFluor(int imageIndex,
                              int channelIndex)
Specified by:
getChannelFluor in interface loci.formats.meta.MetadataRetrieve
Overrides:
getChannelFluor in class loci.formats.meta.DummyMetadata

getChannelID

public String getChannelID(int imageIndex,
                           int channelIndex)
Specified by:
getChannelID in interface loci.formats.meta.MetadataRetrieve
Overrides:
getChannelID in class loci.formats.meta.DummyMetadata

getChannelIlluminationType

public ome.xml.model.enums.IlluminationType getChannelIlluminationType(int imageIndex,
                                                                       int channelIndex)
Specified by:
getChannelIlluminationType in interface loci.formats.meta.MetadataRetrieve
Overrides:
getChannelIlluminationType in class loci.formats.meta.DummyMetadata

getChannelName

public String getChannelName(int imageIndex,
                             int channelIndex)
Specified by:
getChannelName in interface loci.formats.meta.MetadataRetrieve
Overrides:
getChannelName in class loci.formats.meta.DummyMetadata

getChannelNDFilter

public Double getChannelNDFilter(int imageIndex,
                                 int channelIndex)
Specified by:
getChannelNDFilter in interface loci.formats.meta.MetadataRetrieve
Overrides:
getChannelNDFilter in class loci.formats.meta.DummyMetadata

getChannelPinholeSize

public Double getChannelPinholeSize(int imageIndex,
                                    int channelIndex)
Specified by:
getChannelPinholeSize in interface loci.formats.meta.MetadataRetrieve
Overrides:
getChannelPinholeSize in class loci.formats.meta.DummyMetadata

getChannelPockelCellSetting

public Integer getChannelPockelCellSetting(int imageIndex,
                                           int channelIndex)
Specified by:
getChannelPockelCellSetting in interface loci.formats.meta.MetadataRetrieve
Overrides:
getChannelPockelCellSetting in class loci.formats.meta.DummyMetadata

getChannelSamplesPerPixel

public ome.xml.model.primitives.PositiveInteger getChannelSamplesPerPixel(int imageIndex,
                                                                          int channelIndex)
Specified by:
getChannelSamplesPerPixel in interface loci.formats.meta.MetadataRetrieve
Overrides:
getChannelSamplesPerPixel in class loci.formats.meta.DummyMetadata

getPlaneCount

public int getPlaneCount(int imageIndex)
Specified by:
getPlaneCount in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPlaneCount in class loci.formats.meta.DummyMetadata

getPlaneDeltaT

public Double getPlaneDeltaT(int imageIndex,
                             int planeIndex)
Specified by:
getPlaneDeltaT in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPlaneDeltaT in class loci.formats.meta.DummyMetadata

getPlaneExposureTime

public Double getPlaneExposureTime(int imageIndex,
                                   int planeIndex)
Specified by:
getPlaneExposureTime in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPlaneExposureTime in class loci.formats.meta.DummyMetadata

getPlanePositionX

public Double getPlanePositionX(int imageIndex,
                                int planeIndex)
Specified by:
getPlanePositionX in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPlanePositionX in class loci.formats.meta.DummyMetadata

getPlanePositionY

public Double getPlanePositionY(int imageIndex,
                                int planeIndex)
Specified by:
getPlanePositionY in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPlanePositionY in class loci.formats.meta.DummyMetadata

getPlanePositionZ

public Double getPlanePositionZ(int imageIndex,
                                int planeIndex)
Specified by:
getPlanePositionZ in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPlanePositionZ in class loci.formats.meta.DummyMetadata

getPlaneTheC

public ome.xml.model.primitives.NonNegativeInteger getPlaneTheC(int imageIndex,
                                                                int planeIndex)
Specified by:
getPlaneTheC in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPlaneTheC in class loci.formats.meta.DummyMetadata

getPlaneTheT

public ome.xml.model.primitives.NonNegativeInteger getPlaneTheT(int imageIndex,
                                                                int planeIndex)
Specified by:
getPlaneTheT in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPlaneTheT in class loci.formats.meta.DummyMetadata

getPlaneTheZ

public ome.xml.model.primitives.NonNegativeInteger getPlaneTheZ(int imageIndex,
                                                                int planeIndex)
Specified by:
getPlaneTheZ in interface loci.formats.meta.MetadataRetrieve
Overrides:
getPlaneTheZ in class loci.formats.meta.DummyMetadata

getXMLAnnotationCount

public int getXMLAnnotationCount()
Specified by:
getXMLAnnotationCount in interface loci.formats.meta.MetadataRetrieve
Overrides:
getXMLAnnotationCount in class loci.formats.meta.DummyMetadata

getXMLAnnotationDescription

public String getXMLAnnotationDescription(int XMLAnnotationIndex)
Specified by:
getXMLAnnotationDescription in interface loci.formats.meta.MetadataRetrieve
Overrides:
getXMLAnnotationDescription in class loci.formats.meta.DummyMetadata

getXMLAnnotationID

public String getXMLAnnotationID(int XMLAnnotationIndex)
Specified by:
getXMLAnnotationID in interface loci.formats.meta.MetadataRetrieve
Overrides:
getXMLAnnotationID in class loci.formats.meta.DummyMetadata

getXMLAnnotationNamespace

public String getXMLAnnotationNamespace(int XMLAnnotationIndex)
Specified by:
getXMLAnnotationNamespace in interface loci.formats.meta.MetadataRetrieve
Overrides:
getXMLAnnotationNamespace in class loci.formats.meta.DummyMetadata

getXMLAnnotationValue

public String getXMLAnnotationValue(int XMLAnnotationIndex)
Specified by:
getXMLAnnotationValue in interface loci.formats.meta.MetadataRetrieve
Overrides:
getXMLAnnotationValue in class loci.formats.meta.DummyMetadata

getLongAnnotationCount

public int getLongAnnotationCount()
Specified by:
getLongAnnotationCount in interface loci.formats.meta.MetadataRetrieve
Overrides:
getLongAnnotationCount in class loci.formats.meta.DummyMetadata

getLongAnnotationDescription

public String getLongAnnotationDescription(int longAnnotationIndex)
Specified by:
getLongAnnotationDescription in interface loci.formats.meta.MetadataRetrieve
Overrides:
getLongAnnotationDescription in class loci.formats.meta.DummyMetadata

getLongAnnotationID

public String getLongAnnotationID(int longAnnotationIndex)
Specified by:
getLongAnnotationID in interface loci.formats.meta.MetadataRetrieve
Overrides:
getLongAnnotationID in class loci.formats.meta.DummyMetadata

getLongAnnotationNamespace

public String getLongAnnotationNamespace(int longAnnotationIndex)
Specified by:
getLongAnnotationNamespace in interface loci.formats.meta.MetadataRetrieve
Overrides:
getLongAnnotationNamespace in class loci.formats.meta.DummyMetadata

getLongAnnotationValue

public Long getLongAnnotationValue(int longAnnotationIndex)
Specified by:
getLongAnnotationValue in interface loci.formats.meta.MetadataRetrieve
Overrides:
getLongAnnotationValue in class loci.formats.meta.DummyMetadata

getBooleanAnnotationCount

public int getBooleanAnnotationCount()
Specified by:
getBooleanAnnotationCount in interface loci.formats.meta.MetadataRetrieve
Overrides:
getBooleanAnnotationCount in class loci.formats.meta.DummyMetadata

getBooleanAnnotationDescription

public String getBooleanAnnotationDescription(int booleanAnnotationIndex)
Specified by:
getBooleanAnnotationDescription in interface loci.formats.meta.MetadataRetrieve
Overrides:
getBooleanAnnotationDescription in class loci.formats.meta.DummyMetadata

getBooleanAnnotationID

public String getBooleanAnnotationID(int booleanAnnotationIndex)
Specified by:
getBooleanAnnotationID in interface loci.formats.meta.MetadataRetrieve
Overrides:
getBooleanAnnotationID in class loci.formats.meta.DummyMetadata

getBooleanAnnotationNamespace

public String getBooleanAnnotationNamespace(int booleanAnnotationIndex)
Specified by:
getBooleanAnnotationNamespace in interface loci.formats.meta.MetadataRetrieve
Overrides:
getBooleanAnnotationNamespace in class loci.formats.meta.DummyMetadata

getBooleanAnnotationValue

public Boolean getBooleanAnnotationValue(int booleanAnnotationIndex)
Specified by:
getBooleanAnnotationValue in interface loci.formats.meta.MetadataRetrieve
Overrides:
getBooleanAnnotationValue in class loci.formats.meta.DummyMetadata

getDoubleAnnotationCount

public int getDoubleAnnotationCount()
Specified by:
getDoubleAnnotationCount in interface loci.formats.meta.MetadataRetrieve
Overrides:
getDoubleAnnotationCount in class loci.formats.meta.DummyMetadata

getDoubleAnnotationDescription

public String getDoubleAnnotationDescription(int doubleAnnotationIndex)
Specified by:
getDoubleAnnotationDescription in interface loci.formats.meta.MetadataRetrieve
Overrides:
getDoubleAnnotationDescription in class loci.formats.meta.DummyMetadata

getDoubleAnnotationID

public String getDoubleAnnotationID(int doubleAnnotationIndex)
Specified by:
getDoubleAnnotationID in interface loci.formats.meta.MetadataRetrieve
Overrides:
getDoubleAnnotationID in class loci.formats.meta.DummyMetadata

getDoubleAnnotationNamespace

public String getDoubleAnnotationNamespace(int doubleAnnotationIndex)
Specified by:
getDoubleAnnotationNamespace in interface loci.formats.meta.MetadataRetrieve
Overrides:
getDoubleAnnotationNamespace in class loci.formats.meta.DummyMetadata

getDoubleAnnotationValue

public Double getDoubleAnnotationValue(int doubleAnnotationIndex)
Specified by:
getDoubleAnnotationValue in interface loci.formats.meta.MetadataRetrieve
Overrides:
getDoubleAnnotationValue in class loci.formats.meta.DummyMetadata

getCommentAnnotationCount

public int getCommentAnnotationCount()
Specified by:
getCommentAnnotationCount in interface loci.formats.meta.MetadataRetrieve
Overrides:
getCommentAnnotationCount in class loci.formats.meta.DummyMetadata

getCommentAnnotationDescription

public String getCommentAnnotationDescription(int commentAnnotationIndex)
Specified by:
getCommentAnnotationDescription in interface loci.formats.meta.MetadataRetrieve
Overrides:
getCommentAnnotationDescription in class loci.formats.meta.DummyMetadata

getCommentAnnotationID

public String getCommentAnnotationID(int commentAnnotationIndex)
Specified by:
getCommentAnnotationID in interface loci.formats.meta.MetadataRetrieve
Overrides:
getCommentAnnotationID in class loci.formats.meta.DummyMetadata

getCommentAnnotationNamespace

public String getCommentAnnotationNamespace(int commentAnnotationIndex)
Specified by:
getCommentAnnotationNamespace in interface loci.formats.meta.MetadataRetrieve
Overrides:
getCommentAnnotationNamespace in class loci.formats.meta.DummyMetadata

getCommentAnnotationValue

public String getCommentAnnotationValue(int commentAnnotationIndex)
Specified by:
getCommentAnnotationValue in interface loci.formats.meta.MetadataRetrieve
Overrides:
getCommentAnnotationValue in class loci.formats.meta.DummyMetadata

getTimestampAnnotationCount

public int getTimestampAnnotationCount()
Specified by:
getTimestampAnnotationCount in interface loci.formats.meta.MetadataRetrieve
Overrides:
getTimestampAnnotationCount in class loci.formats.meta.DummyMetadata

getTimestampAnnotationDescription

public String getTimestampAnnotationDescription(int timestampAnnotationIndex)
Specified by:
getTimestampAnnotationDescription in interface loci.formats.meta.MetadataRetrieve
Overrides:
getTimestampAnnotationDescription in class loci.formats.meta.DummyMetadata

getTimestampAnnotationID

public String getTimestampAnnotationID(int timestampAnnotationIndex)
Specified by:
getTimestampAnnotationID in interface loci.formats.meta.MetadataRetrieve
Overrides:
getTimestampAnnotationID in class loci.formats.meta.DummyMetadata

getTimestampAnnotationNamespace

public String getTimestampAnnotationNamespace(int timestampAnnotationIndex)
Specified by:
getTimestampAnnotationNamespace in interface loci.formats.meta.MetadataRetrieve
Overrides:
getTimestampAnnotationNamespace in class loci.formats.meta.DummyMetadata

getTimestampAnnotationValue

public String getTimestampAnnotationValue(int timestampAnnotationIndex)
Specified by:
getTimestampAnnotationValue in interface loci.formats.meta.MetadataRetrieve
Overrides:
getTimestampAnnotationValue in class loci.formats.meta.DummyMetadata

getTagAnnotationCount

public int getTagAnnotationCount()
Specified by:
getTagAnnotationCount in interface loci.formats.meta.MetadataRetrieve
Overrides:
getTagAnnotationCount in class loci.formats.meta.DummyMetadata

getTagAnnotationDescription

public String getTagAnnotationDescription(int tagAnnotationIndex)
Specified by:
getTagAnnotationDescription in interface loci.formats.meta.MetadataRetrieve
Overrides:
getTagAnnotationDescription in class loci.formats.meta.DummyMetadata

getTagAnnotationID

public String getTagAnnotationID(int tagAnnotationIndex)
Specified by:
getTagAnnotationID in interface loci.formats.meta.MetadataRetrieve
Overrides:
getTagAnnotationID in class loci.formats.meta.DummyMetadata

getTagAnnotationNamespace

public String getTagAnnotationNamespace(int tagAnnotationIndex)
Specified by:
getTagAnnotationNamespace in interface loci.formats.meta.MetadataRetrieve
Overrides:
getTagAnnotationNamespace in class loci.formats.meta.DummyMetadata

getTagAnnotationValue

public String getTagAnnotationValue(int tagAnnotationIndex)
Specified by:
getTagAnnotationValue in interface loci.formats.meta.MetadataRetrieve
Overrides:
getTagAnnotationValue in class loci.formats.meta.DummyMetadata

getTermAnnotationCount

public int getTermAnnotationCount()
Specified by:
getTermAnnotationCount in interface loci.formats.meta.MetadataRetrieve
Overrides:
getTermAnnotationCount in class loci.formats.meta.DummyMetadata

getTermAnnotationDescription

public String getTermAnnotationDescription(int termAnnotationIndex)
Specified by:
getTermAnnotationDescription in interface loci.formats.meta.MetadataRetrieve
Overrides:
getTermAnnotationDescription in class loci.formats.meta.DummyMetadata

getTermAnnotationID

public String getTermAnnotationID(int termAnnotationIndex)
Specified by:
getTermAnnotationID in interface loci.formats.meta.MetadataRetrieve
Overrides:
getTermAnnotationID in class loci.formats.meta.DummyMetadata

getTermAnnotationNamespace

public String getTermAnnotationNamespace(int termAnnotationIndex)
Specified by:
getTermAnnotationNamespace in interface loci.formats.meta.MetadataRetrieve
Overrides:
getTermAnnotationNamespace in class loci.formats.meta.DummyMetadata

getTermAnnotationValue

public String getTermAnnotationValue(int termAnnotationIndex)
Specified by:
getTermAnnotationValue in interface loci.formats.meta.MetadataRetrieve
Overrides:
getTermAnnotationValue in class loci.formats.meta.DummyMetadata


OmeroJava Api

Version: 4.3.4-dbcbce5a-b4

Copyright © 2009 The University of Dundee. All Rights Reserved.