Uses of Class
ome.annotations.RolesAllowed

Packages that use RolesAllowed
ome.logic The central repository of implementations which will be accessible through this server. 
ome.services Base services package for OMERO API services This includes classes that implement OMERO API services described as interfaces in the OMERO Common component. 
ome.services.delete Implementations of the ome.api.IDelete service. 
ome.services.projection   
ome.services.sessions   
ome.services.sharing ome.api.IShare support infrastructure. 
 

Uses of RolesAllowed in ome.logic
 

Methods in ome.logic with annotations of type RolesAllowed
 void AdminImpl.addGroupOwners(ome.model.meta.ExperimenterGroup group, ome.model.meta.Experimenter... owner)
           
 void AdminImpl.addGroups(ome.model.meta.Experimenter user, ome.model.meta.ExperimenterGroup... groups)
           
 Long QueryImpl.aggByQuery(String agg, String field, String query, ome.parameters.Parameters params)
           
 Map<String,Long> QueryImpl.aggMapByQuery(String agg, String mapKey, String field, String query, ome.parameters.Parameters params)
           
<T extends ome.model.IEnum>
List<T>
TypesImpl.allEnumerations(Class<T> k)
           
 Map<Boolean,List<Long>> RenderingSettingsImpl.applySettingsToDataset(long from, long to)
          Implemented as specified by the IRenderingSettings I/F.
 boolean RenderingSettingsImpl.applySettingsToImage(long from, long to)
          Implemented as specified by the IRenderingSettings I/F
 Map<Boolean,List<Long>> RenderingSettingsImpl.applySettingsToImages(long from, List<Long> nodeIds)
          Implemented as specified by the IRenderingSettings I/F
 boolean RenderingSettingsImpl.applySettingsToPixels(long from, long to)
          Implemented as specified by the IRenderingSettings I/F
 Map<Boolean,List<Long>> RenderingSettingsImpl.applySettingsToProject(long from, long to)
          Implemented as specified by the IRenderingSettings I/F.
<T extends ome.model.IObject>
Map<Boolean,List<Long>>
RenderingSettingsImpl.applySettingsToSet(long from, Class<T> klass, Set<Long> nodeIds)
          Implemented as specified by the IRenderingSettings I/F.
 boolean AdminImpl.canUpdate(ome.model.IObject obj)
           
 void AdminImpl.changeGroup(ome.model.IObject iObject, String groupName)
           
 void AdminImpl.changeOwner(ome.model.IObject iObject, String omeName)
           
 void AdminImpl.changePassword(String newPassword)
           
 void AdminImpl.changePasswordWithOldPassword(String oldPassword, String newPassword)
           
 void AdminImpl.changePermissions(ome.model.IObject iObject, ome.model.internal.Permissions perms)
          the implementation of this method is somewhat tricky in that Permissions changes must be allowed even when other updates are not.
 void AdminImpl.changeUserPassword(String user, String newPassword)
           
 boolean QueryImpl.checkProperty(String type, String property)
           
 boolean QueryImpl.checkType(String type)
           
 void QueryImpl.clear()
           
 ome.model.meta.Experimenter[] AdminImpl.containedExperimenters(long groupId)
           
 ome.model.meta.ExperimenterGroup[] AdminImpl.containedGroups(long experimenterId)
           
 boolean QueryImpl.contains(Object obj)
           
 Long PixelsImpl.copyAndResizeImage(long imageId, Integer sizeX, Integer sizeY, Integer sizeZ, Integer sizeT, List<Integer> channelList, String name, boolean copyStats)
           
 Long PixelsImpl.copyAndResizePixels(long pixelsId, Integer sizeX, Integer sizeY, Integer sizeZ, Integer sizeT, List<Integer> channelList, String methodology, boolean copyStats)
           
 Long MetadataImpl.countAnnotationsUsedNotOwned(Class annotationType, long userID)
          Implemented as specified by the IMetadata I/F
 Long MetadataImpl.countSpecifiedAnnotations(Class type, Set<String> include, Set<String> exclude, ome.parameters.Parameters options)
          Implemented as specified by the IMetadata I/F
 ome.model.IObject PojosImpl.createDataObject(ome.model.IObject arg0, ome.parameters.Parameters arg1)
          Implemented as specified by the IContainer I/F
 ome.model.IObject[] PojosImpl.createDataObjects(ome.model.IObject[] arg0, ome.parameters.Parameters arg1)
          Implemented as specified by the IContainer I/F
<T extends ome.model.IEnum>
T
TypesImpl.createEnumeration(T newEnum)
           
 long AdminImpl.createExperimenter(ome.model.meta.Experimenter experimenter, ome.model.meta.ExperimenterGroup defaultGroup, ome.model.meta.ExperimenterGroup... otherGroups)
           
 long AdminImpl.createExperimenterWithPassword(ome.model.meta.Experimenter experimenter, String password, ome.model.meta.ExperimenterGroup defaultGroup, ome.model.meta.ExperimenterGroup... otherGroups)
           
 long AdminImpl.createGroup(ome.model.meta.ExperimenterGroup group)
           
 Long PixelsImpl.createImage(int sizeX, int sizeY, int sizeZ, int sizeT, List<Integer> channelList, ome.model.enums.PixelsType pixelsType, String name, String description)
           
 long AdminImpl.createSystemUser(ome.model.meta.Experimenter newSystemUser)
           
 long AdminImpl.createUser(ome.model.meta.Experimenter newUser, String defaultGroup)
           
 void PojosImpl.deleteDataObject(ome.model.IObject row, ome.parameters.Parameters arg1)
          Implemented as specified by the IContainer I/F
 void PojosImpl.deleteDataObjects(ome.model.IObject[] rows, ome.parameters.Parameters options)
          Implemented as specified by the IContainer I/F
<T extends ome.model.IEnum>
void
TypesImpl.deleteEnumeration(T oEnum)
           
 void AdminImpl.deleteExperimenter(ome.model.meta.Experimenter user)
           
 void AdminImpl.deleteGroup(ome.model.meta.ExperimenterGroup group)
           
 void UpdateImpl.deleteObject(ome.model.IObject row)
           
 void QueryImpl.evict(Object obj)
           
<T> T
QueryImpl.execute(org.springframework.orm.hibernate3.HibernateCallback callback)
           
<T> T
QueryImpl.execute(Query<T> query)
           
 ome.model.IObject QueryImpl.find(Class klass, long id)
           
<T extends ome.model.IObject>
List<T>
QueryImpl.findAll(Class<T> klass, ome.parameters.Filter filter)
           
<T extends ome.model.IObject>
List<T>
QueryImpl.findAllByExample(T example, ome.parameters.Filter filter)
           
<T extends ome.model.IObject>
List<T>
QueryImpl.findAllByFullText(Class<T> type, String query, ome.parameters.Parameters params)
           
<T extends ome.model.IObject>
List<T>
QueryImpl.findAllByQuery(String queryName, ome.parameters.Parameters params)
           
<T extends ome.model.IObject>
List<T>
QueryImpl.findAllByString(Class<T> klass, String fieldName, String value, boolean caseSensitive, ome.parameters.Filter filter)
           
<T extends ome.model.IObject>
T
QueryImpl.findByExample(T example)
           
<T extends ome.model.IObject>
T
QueryImpl.findByQuery(String queryName, ome.parameters.Parameters params)
           
<T extends ome.model.IObject>
T
QueryImpl.findByString(Class<T> klass, String fieldName, String value)
           
 Set PojosImpl.findContainerHierarchies(Class rootNodeType, Set imageIds, ome.parameters.Parameters options)
          Implemented as speficied by the IContainer I/F
 String LdapImpl.findDN(String username)
           
 ome.model.meta.Experimenter LdapImpl.findExperimenter(String username)
           
 void UpdateImpl.flush()
           
 ome.model.IObject QueryImpl.get(Class klass, long id)
           
<T extends ome.model.IObject>
List<T>
PixelsImpl.getAllEnumerations(Class<T> klass)
           
 List<Class<ome.model.IAnnotated>> TypesImpl.getAnnotationTypes()
           
 int PixelsImpl.getBitDepth(ome.model.enums.PixelsType pixelsType)
           
 Map PojosImpl.getCollectionCount(String type, String property, Set ids, ome.parameters.Parameters options)
          Implemented as specified by the IContainer I/F
<T extends ome.model.IObject>
List<Class<T>>
TypesImpl.getContainerTypes()
           
 ome.model.meta.ExperimenterGroup AdminImpl.getDefaultGroup(long experimenterId)
           
<T extends ome.model.IEnum>
T
TypesImpl.getEnumeration(Class<T> k, String string)
           
<T extends ome.model.IObject>
T
PixelsImpl.getEnumeration(Class<T> klass, String value)
           
<T extends ome.model.IEnum>
Map<Class<T>,List<T>>
TypesImpl.getEnumerationsWithEntries()
           
<T extends ome.model.IEnum>
List<Class<T>>
TypesImpl.getEnumerationTypes()
           
 ome.model.meta.Experimenter AdminImpl.getExperimenter(long id)
           
 long RepositoryInfoImpl.getFreeSpaceInKilobytes()
           
 ome.model.meta.ExperimenterGroup AdminImpl.getGroup(long id)
           
 Set PojosImpl.getImages(Class rootNodeType, Set rootNodeIds, ome.parameters.Parameters options)
          Implemented as specified by the IContainer I/F
 Set PojosImpl.getImagesByOptions(ome.parameters.Parameters options)
          Implemented as specified by the IContainer I/F
<T extends ome.model.IObject>
List<Class<T>>
TypesImpl.getImportTypes()
           
 List<Long> AdminImpl.getLeaderOfGroupIds(ome.model.meta.Experimenter e)
           
 List<Long> AdminImpl.getMemberOfGroupIds(ome.model.meta.Experimenter e)
           
<T extends ome.model.IEnum>
List<T>
TypesImpl.getOriginalEnumerations()
           
<T extends ome.model.IObject>
List<Class<T>>
TypesImpl.getPojoTypes()
           
 ome.model.display.RenderingDef RenderingSettingsImpl.getRenderingSettings(long pixelsId)
          Implemented as specified by the IRenderingSettings I/F
<T extends ome.model.IObject>
List<Class<T>>
TypesImpl.getResultTypes()
           
 boolean LdapImpl.getSetting()
           
 Map MetadataImpl.getTaggedObjectsCount(Set<Long> tagIds, ome.parameters.Parameters options)
          Implemented as specified by the IMetadata I/F
 double RepositoryInfoImpl.getUsageFraction()
          Deprecated. 
 long RepositoryInfoImpl.getUsedSpaceInKilobytes()
          Deprecated. 
 Set PojosImpl.getUserImages(ome.parameters.Parameters options)
          Implemented as specified by the IContainer I/F
 List<String> AdminImpl.getUserRoles(ome.model.meta.Experimenter e)
           
 ome.model.meta.ExperimenterGroup AdminImpl.groupProxy(Long id)
           
 ome.model.meta.ExperimenterGroup AdminImpl.groupProxy(String groupName)
           
 void UpdateImpl.indexObject(ome.model.IObject row)
           
 void QueryImpl.initialize(Object obj)
           
 ome.model.ILink[] PojosImpl.link(ome.model.ILink[] arg0, ome.parameters.Parameters arg1)
          Implemented as specified by the IContainer I/F
<A extends ome.model.annotations.Annotation>
Set<A>
MetadataImpl.loadAnnotation(Set<Long> annotationIds)
          Implemented as specified by the IMetadata I/F
<T extends ome.model.IObject,A extends ome.model.annotations.Annotation>
Map<Long,Set<A>>
MetadataImpl.loadAnnotations(Class<T> rootNodeType, Set<Long> rootNodeIds, Set<String> annotationTypes, Set<Long> annotatorIds, ome.parameters.Parameters options)
          Implemented as specified by the IMetadata I/F
 Set<ome.model.IObject> MetadataImpl.loadAnnotationsUsedNotOwned(Class annotationType, long userID)
          Implemented as specified by the IMetadata I/F
 Set MetadataImpl.loadChannelAcquisitionData(Set<Long> ids)
          Implemented as specified by the IMetadata I/F
 Set PojosImpl.loadContainerHierarchy(Class rootNodeType, Set rootNodeIds, ome.parameters.Parameters options)
          Implemented as speficied by the IContainer I/F
 ome.model.acquisition.Instrument MetadataImpl.loadInstrument(long id)
          Implemented as specified by the IMetadata I/F
 ome.model.display.RenderingDef PixelsImpl.loadRndSettings(long renderingDefId)
          Implemented as specified by the IPixels I/F.
<A extends ome.model.annotations.Annotation>
Set<A>
MetadataImpl.loadSpecifiedAnnotations(Class type, Set<String> include, Set<String> exclude, ome.parameters.Parameters options)
          Implemented as specified by the IMetadata I/F
 Map<Long,Set<ome.model.IObject>> MetadataImpl.loadTagContent(Set<Long> tagIds, ome.parameters.Parameters options)
          Implemented as specified by the IMetadata I/F
 Set<ome.model.IObject> MetadataImpl.loadTagSets(ome.parameters.Parameters options)
          Implemented as specified by the IMetadata I/F
 ome.model.meta.Experimenter AdminImpl.lookupExperimenter(String omeName)
           
 List<ome.model.meta.Experimenter> AdminImpl.lookupExperimenters()
           
 ome.model.meta.ExperimenterGroup AdminImpl.lookupGroup(String groupName)
           
 List<ome.model.meta.ExperimenterGroup> AdminImpl.lookupGroups()
           
 String AdminImpl.lookupLdapAuthExperimenter(long id)
           
 List<Map<String,Object>> AdminImpl.lookupLdapAuthExperimenters()
           
 void AdminImpl.moveToCommonSpace(ome.model.IObject... iObjects)
           
<T extends ome.model.IObject>
ome.model.internal.Permissions
TypesImpl.permissions(Class<T> k)
           
 List<Object[]> QueryImpl.projection(String query, ome.parameters.Parameters p)
           
 void AdminImpl.removeGroupOwners(ome.model.meta.ExperimenterGroup group, ome.model.meta.Experimenter... owner)
           
 void AdminImpl.removeGroups(ome.model.meta.Experimenter user, ome.model.meta.ExperimenterGroup... groups)
           
 void RepositoryInfoImpl.removeUnusedFiles()
           
 void RenderingSettingsImpl.resetDefaults(ome.model.display.RenderingDef def, ome.model.core.Pixels pixels)
          Implemented as specified by the IRenderingSettings I/F
<T extends ome.model.IObject>
Set<Long>
RenderingSettingsImpl.resetDefaultsByOwnerInSet(Class<T> klass, Set<Long> nodeIds)
          Implemented as specified by the IRenderingSettings I/F.
 void RenderingSettingsImpl.resetDefaultsForPixels(long to)
          Implemented as specified by the IRenderingSettings I/F.
 Set<Long> RenderingSettingsImpl.resetDefaultsInDataset(long to)
          Implemented as specified by the IRenderingSettings I/F.
 void RenderingSettingsImpl.resetDefaultsInImage(long to)
          Implemented as specified by the IRenderingSettings I/F.
<T extends ome.model.IObject>
Set<Long>
RenderingSettingsImpl.resetDefaultsInSet(Class<T> klass, Set<Long> nodeIds)
          Implemented as specified by the IRenderingSettings I/F.
 ome.model.display.RenderingDef RenderingSettingsImpl.resetDefaultsNoSave(ome.model.display.RenderingDef def, ome.model.core.Pixels pixels)
          Implemented as specified by the IRenderingSettings I/F
<T extends ome.model.IEnum>
void
TypesImpl.resetEnumerations(Class<T> klass)
           
<T extends ome.model.IObject>
Set<Long>
RenderingSettingsImpl.resetMinMaxInSet(Class<T> klass, Set<Long> nodeIds)
          Implemented as specified by the IRenderingSettings I/F.
 List<ome.model.IObject> PixelsImpl.retrieveAllRndSettings(long pixId, long userId)
          Implemented as specified by the IPixels I/F.
 Collection PojosImpl.retrieveCollection(ome.model.IObject arg0, String arg1, ome.parameters.Parameters arg2)
          Implemented as specified by the IContainer I/F
 ome.model.core.Pixels PixelsImpl.retrievePixDescription(long pixId)
           
 ome.model.display.RenderingDef PixelsImpl.retrieveRndSettings(long pixId)
          Implemented as specified by the IPixels I/F.
 ome.model.display.RenderingDef PixelsImpl.retrieveRndSettingsFor(long pixId, long userId)
          Implemented as specified by the IPixels I/F.
 void RepositoryInfoImpl.sanityCheckRepository()
           
 ome.model.IObject[] UpdateImpl.saveAndReturnArray(ome.model.IObject[] graph)
           
 List<Long> UpdateImpl.saveAndReturnIds(ome.model.IObject[] graph)
           
 ome.model.IObject UpdateImpl.saveAndReturnObject(ome.model.IObject graph)
           
 void UpdateImpl.saveArray(ome.model.IObject[] graph)
           
 void UpdateImpl.saveCollection(Collection graph)
           
 void UpdateImpl.saveObject(ome.model.IObject graph)
           
 void PixelsImpl.saveRndSettings(ome.model.display.RenderingDef rndSettings)
           
 List<ome.model.meta.Experimenter> LdapImpl.searchAll()
           
 List<ome.model.meta.Experimenter> LdapImpl.searchByAttribute(String dns, String attr, String value)
           
 List<ome.model.meta.Experimenter> LdapImpl.searchByAttributes(String dn, String[] attributes, String[] values)
           
 ome.model.meta.Experimenter LdapImpl.searchByDN(String dns)
           
 List<String> LdapImpl.searchDnInGroups(String attr, String value)
           
 void PixelsImpl.setChannelGlobalMinMax(long pixelsId, int channelIndex, double min, double max)
           
 void ConfigImpl.setConfigValue(String key, String value)
          see IConfig.setConfigValue(String, String)
 boolean ConfigImpl.setConfigValueIfEquals(String key, String value, String test)
          see IConfig.setConfigValueIfEquals(String, String, String)
 void AdminImpl.setDefaultGroup(ome.model.meta.Experimenter user, ome.model.meta.ExperimenterGroup group)
           
 void LdapImpl.setDN(Long experimenterID, String dn)
           
 void AdminImpl.setGroupOwner(ome.model.meta.ExperimenterGroup group, ome.model.meta.Experimenter owner)
           
 void RenderingSettingsImpl.setOriginalSettingsForPixels(long to)
          Implemented as specified by the IRenderingSettings I/F.
 Set<Long> RenderingSettingsImpl.setOriginalSettingsInDataset(long to)
          Implemented as specified by the IRenderingSettings I/F.
 void RenderingSettingsImpl.setOriginalSettingsInImage(long to)
          Implemented as specified by the IRenderingSettings I/F.
<T extends ome.model.IObject>
Set<Long>
RenderingSettingsImpl.setOriginalSettingsInSet(Class<T> klass, Set<Long> nodeIds)
          Implemented as specified by the IRenderingSettings I/F.
 void AdminImpl.synchronizeLoginCache()
           
 void PojosImpl.unlink(ome.model.ILink[] arg0, ome.parameters.Parameters arg1)
          Implemented as specified by the IContainer I/F
 void AdminImpl.unsetGroupOwner(ome.model.meta.ExperimenterGroup group, ome.model.meta.Experimenter owner)
           
 ome.model.IObject PojosImpl.updateDataObject(ome.model.IObject arg0, ome.parameters.Parameters arg1)
          Implemented as specified by the IContainer I/F
 ome.model.IObject[] PojosImpl.updateDataObjects(ome.model.IObject[] arg0, ome.parameters.Parameters arg1)
          Implemented as specified by the IContainer I/F
<T extends ome.model.IEnum>
T
TypesImpl.updateEnumeration(T oEnum)
           
<T extends ome.model.IEnum>
void
TypesImpl.updateEnumerations(List<T> listEnum)
           
 void AdminImpl.updateExperimenter(ome.model.meta.Experimenter experimenter)
           
 void AdminImpl.updateExperimenterWithPassword(ome.model.meta.Experimenter experimenter, String password)
           
 void AdminImpl.updateGroup(ome.model.meta.ExperimenterGroup group)
           
 void AdminImpl.updateSelf(ome.model.meta.Experimenter e)
           
 long AdminImpl.uploadMyUserPhoto(String filename, String mimetype, byte[] data)
           
 ome.model.meta.Experimenter AdminImpl.userProxy(Long id)
           
 ome.model.meta.Experimenter AdminImpl.userProxy(String omeName)
           
 

Uses of RolesAllowed in ome.services
 

Methods in ome.services with annotations of type RolesAllowed
 void JobBean.activate()
          Does almost nothing.
 void RawFileBean.activate()
           
 void RawPixelsBean.activate()
           
 void RenderingBean.activate()
           
 void SearchBean.activate()
           
 void ThumbnailBean.activate()
           
 int SearchBean.activeQueries()
           
 void RenderingBean.addCodomainMap(CodomainMapContext mapCtx)
          Implemented as specified by the RenderingEngine interface.
 void SearchBean.addOrderByAsc(String path)
           
 void SearchBean.addOrderByDesc(String path)
           
 void SearchBean.allTypes()
           
 void SearchBean.and()
           
 ome.model.jobs.JobStatus JobBean.attach(long id)
           
 void SearchBean.byAnnotatedWith(ome.model.annotations.Annotation... examples)
           
 void SearchBean.byFullText(String query)
           
 void SearchBean.byGroupForTags(String group)
           
 void SearchBean.byHqlQuery(String query, ome.parameters.Parameters p)
           
 void SearchBean.bySimilarTerms(String... terms)
           
 void SearchBean.bySomeMustNone(String[] some, String[] must, String[] none)
           
 void SearchBean.byTagForGroups(String tag)
           
 void SearchBean.byUUID(String[] uuids)
           
 byte[] RawPixelsBean.calculateMessageDigest()
           
 void JobBean.cancelJob()
           
 void SearchBean.clearQueries()
           
 void JobBean.close()
           
 void RawFileBean.close()
           
 void RawPixelsBean.close()
           
 void RenderingBean.close()
           
 void SearchBean.close()
           
 void ThumbnailBean.close()
           
 void ThumbnailBean.createThumbnail(Integer sizeX, Integer sizeY)
           
 void ThumbnailBean.createThumbnails()
           
 void ThumbnailBean.createThumbnailsByLongestSideSet(Integer size, Set<Long> pixelsIds)
           
 Map<String,ome.model.annotations.Annotation> SearchBean.currentMetadata()
           
 List<Map<String,ome.model.annotations.Annotation>> SearchBean.currentMetadataList()
           
 boolean RawFileBean.exists()
           
<T extends ome.model.IObject>
void
SearchBean.fetchAlso(Map<T,String> fetches)
           
 void SearchBean.fetchAlso(String... fetches)
           
 void SearchBean.fetchAnnotations(Class... classes)
           
 List RenderingBean.getAvailableFamilies()
          Implemented as specified by the RenderingEngine interface.
 List RenderingBean.getAvailableModels()
          Implemented as specified by the RenderingEngine interface.
 int SearchBean.getBatchSize()
           
 int RawPixelsBean.getByteWidth()
           
 double RenderingBean.getChannelCurveCoefficient(int w)
          Implemented as specified by the RenderingEngine interface.
 ome.model.enums.Family RenderingBean.getChannelFamily(int w)
          Implemented as specified by the RenderingEngine interface.
 boolean RenderingBean.getChannelNoiseReduction(int w)
          Implemented as specified by the RenderingEngine interface.
 double[] RenderingBean.getChannelStats(int w)
          Implemented as specified by the RenderingEngine interface.
 double RenderingBean.getChannelWindowEnd(int w)
          Implemented as specified by the RenderingEngine interface.
 double RenderingBean.getChannelWindowStart(int w)
          Implemented as specified by the RenderingEngine interface.
 byte[] RawPixelsBean.getCol(int arg0, int arg1, int arg2, int arg3)
           
 float RenderingBean.getCompressionLevel()
          Implemented as specified by the RenderingEngine interface.
 EventContext AbstractStatefulBean.getCurrentEventContext()
           
 EventContext RenderingBean.getCurrentEventContext()
          Implemented as specified by the RenderingEngine interface.
 int RenderingBean.getDefaultT()
          Implemented as specified by the RenderingEngine interface.
 int RenderingBean.getDefaultZ()
          Implemented as specified by the RenderingEngine interface.
 byte[] RawPixelsBean.getHypercube(List<Integer> offset, List<Integer> size, List<Integer> step)
           
 ome.model.jobs.Job JobBean.getJob()
           
 ome.model.enums.RenderingModel RenderingBean.getModel()
          Implemented as specified by the RenderingEngine interface.
 ome.model.core.Pixels RenderingBean.getPixels()
          Implemented as specified by the RenderingEngine interface.
 long RawPixelsBean.getPixelsId()
           
 double RenderingBean.getPixelsTypeLowerBound(int w)
          Implemented as specified by the RenderingEngine interface.
 double RenderingBean.getPixelsTypeUpperBound(int w)
          Implemented as specified by the RenderingEngine interface.
 byte[] RawPixelsBean.getPlane(int arg0, int arg1, int arg2)
           
 long RawPixelsBean.getPlaneOffset(int arg0, int arg1, int arg2)
           
 byte[] RawPixelsBean.getPlaneRegion(int z, int c, int t, int count, int offset)
           
 int RawPixelsBean.getPlaneSize()
           
 ome.model.display.QuantumDef RenderingBean.getQuantumDef()
          Implemented as specified by the RenderingEngine interface.
 byte[] RawPixelsBean.getRegion(int arg0, long arg1)
           
 long RenderingBean.getRenderingDefId()
           
 long ThumbnailBean.getRenderingDefId()
           
 int RawPixelsBean.getResolutionLevel()
           
 int RenderingBean.getResolutionLevel()
           
 int RawPixelsBean.getResolutionLevels()
           
 int RenderingBean.getResolutionLevels()
           
 int[] RenderingBean.getRGBA(int w)
          Implemented as specified by the RenderingEngine interface.
 byte[] RawPixelsBean.getRow(int arg0, int arg1, int arg2, int arg3)
           
 long RawPixelsBean.getRowOffset(int arg0, int arg1, int arg2, int arg3)
           
 int RawPixelsBean.getRowSize()
           
 byte[] RawPixelsBean.getStack(int arg0, int arg1)
           
 long RawPixelsBean.getStackOffset(int arg0, int arg1)
           
 int RawPixelsBean.getStackSize()
           
 byte[] ThumbnailBean.getThumbnail(Integer sizeX, Integer sizeY)
           
 byte[] ThumbnailBean.getThumbnailByLongestSide(Integer size)
           
 byte[] ThumbnailBean.getThumbnailByLongestSideDirect(Integer size)
           
 Map<Long,byte[]> ThumbnailBean.getThumbnailByLongestSideSet(Integer size, Set<Long> pixelsIds)
           
 byte[] ThumbnailBean.getThumbnailDirect(Integer sizeX, Integer sizeY)
           
 byte[] ThumbnailBean.getThumbnailForSectionByLongestSideDirect(int theZ, int theT, Integer size)
           
 byte[] ThumbnailBean.getThumbnailForSectionDirect(int theZ, int theT, Integer sizeX, Integer sizeY)
           
 Map<Long,byte[]> ThumbnailBean.getThumbnailSet(Integer sizeX, Integer sizeY, Set<Long> pixelsIds)
           
 byte[] RawPixelsBean.getTile(int z, int c, int t, int x, int y, int w, int h)
           
 int[] RawPixelsBean.getTileSize()
           
 int[] RenderingBean.getTileSize()
           
 byte[] RawPixelsBean.getTimepoint(int arg0)
           
 long RawPixelsBean.getTimepointOffset(int arg0)
           
 int RawPixelsBean.getTimepointSize()
           
 int RawPixelsBean.getTotalSize()
           
 boolean SearchBean.hasNext()
           
 boolean RenderingBean.isActive(int w)
          Implemented as specified by the RenderingEngine interface.
 boolean SearchBean.isAllowLeadingWildcard()
           
 boolean SearchBean.isCaseSensitive()
           
 boolean RawPixelsBean.isFloat()
           
 boolean SearchBean.isMergedBatches()
           
 boolean RenderingBean.isPixelsTypeSigned()
          Implemented as specified by the RenderingEngine interface.
 boolean SearchBean.isReturnUnloaded()
           
 boolean RawPixelsBean.isSigned()
           
 boolean SearchBean.isUseProjections()
           
 boolean JobBean.jobError()
           
 Timestamp JobBean.jobFinished()
           
 String JobBean.jobMessage()
           
 boolean JobBean.jobRunning()
           
 ome.model.jobs.JobStatus JobBean.jobStatus()
           
 void SearchBean.lastresultsAsWorkingGroup()
           
 void RenderingBean.load()
          Implemented as specified by the RenderingEngine interface.
 void RenderingBean.loadRenderingDef(long renderingDefId)
          Implemented as specified by the RenderingEngine interface.
 void RenderingBean.lookupPixels(long pixelsId)
          Implemented as specified by the RenderingEngine interface.
 boolean RenderingBean.lookupRenderingDef(long pixelsId)
          Implemented as specified by the RenderingEngine interface.
 ome.model.IObject SearchBean.next()
           
 void SearchBean.not()
           
 void SearchBean.notAnnotatedBy(ome.model.internal.Details d)
           
 void SearchBean.notOwnedBy(ome.model.internal.Details d)
           
 void SearchBean.onlyAnnotatedBetween(Timestamp start, Timestamp stop)
           
 void SearchBean.onlyAnnotatedBy(ome.model.internal.Details d)
           
 void SearchBean.onlyAnnotatedWith(Class... classes)
           
 void SearchBean.onlyCreatedBetween(Timestamp start, Timestamp stop)
           
 void SearchBean.onlyIds(Long... ids)
           
 void SearchBean.onlyModifiedBetween(Timestamp start, Timestamp stop)
           
 void SearchBean.onlyOwnedBy(ome.model.internal.Details d)
           
<T extends ome.model.IObject>
void
SearchBean.onlyType(Class<T> klass)
           
<T extends ome.model.IObject>
void
SearchBean.onlyTypes(Class<T>... classes)
           
 void SearchBean.or()
           
 void JobBean.passivate()
          Does nothing.
 void RawFileBean.passivate()
           
 void RawPixelsBean.passivate()
           
 void RenderingBean.passivate()
           
 void SearchBean.passivate()
           
 void ThumbnailBean.passivate()
           
 void RawPixelsBean.prepare(Set<Long> pixelsIds)
           
 byte[] RawFileBean.read(long position, int length)
           
 void SearchBean.remove()
           
 void RenderingBean.removeCodomainMap(CodomainMapContext mapCtx)
          Implemented as specified by the RenderingEngine interface.
 RGBBuffer RenderingBean.render(PlaneDef pd)
          Implemented as specified by the RenderingEngine interface.
 int[] RenderingBean.renderAsPackedInt(PlaneDef pd)
          Implemented as specified by the RenderingEngine interface.
 int[] RenderingBean.renderAsPackedIntAsRGBA(PlaneDef pd)
          Implemented as specified by the RenderingEngine interface.
 byte[] RenderingBean.renderCompressed(PlaneDef pd)
          Implemented as specified by the RenderingEngine interface.
 int[] RenderingBean.renderProjectedAsPackedInt(int algorithm, int timepoint, int stepping, int start, int end)
          Implemented as specified by the RenderingEngine interface.
 byte[] RenderingBean.renderProjectedCompressed(int algorithm, int timepoint, int stepping, int start, int end)
          Implemented as specified by the RenderingEngine interface.
 boolean RawPixelsBean.requiresPixelsPyramid()
           
 boolean RenderingBean.requiresPixelsPyramid()
           
 void RenderingBean.resetDefaults()
          Implemented as specified by the RenderingEngine interface.
 void SearchBean.resetDefaults()
           
 void ThumbnailBean.resetDefaults()
           
 void RenderingBean.resetDefaultsNoSave()
          Implemented as specified by the RenderingEngine interface.
<T extends ome.model.IObject>
List<T>
SearchBean.results()
           
 ome.model.core.OriginalFile RawFileBean.save()
           
 ome.model.core.Pixels RawPixelsBean.save()
           
 void RenderingBean.saveCurrentSettings()
          Implemented as specified by the RenderingEngine interface.
 void RenderingBean.setActive(int w, boolean active)
          Implemented as specified by the RenderingEngine interface.
 void SearchBean.setAllowLeadingWildcard(boolean allowLeadingWildcard)
           
 void SearchBean.setBatchSize(int size)
           
 void SearchBean.setCaseSentivice(boolean caseSensitive)
           
 void RenderingBean.setChannelWindow(int w, double start, double end)
          Implemented as specified by the RenderingEngine interface.
 void RenderingBean.setCodomainInterval(int start, int end)
          Implemented as specified by the RenderingEngine interface.
 void RenderingBean.setCompressionLevel(float percentage)
          Implemented as specified by the RenderingEngine interface.
 void RenderingBean.setDefaultT(int t)
          Implemented as specified by the RenderingEngine interface.
 void RenderingBean.setDefaultZ(int z)
          Implemented as specified by the RenderingEngine interface.
 void RawFileBean.setFileId(long fileId)
           
 void SearchBean.setIdOnly()
           
 void SearchBean.setMergedBatches(boolean merge)
           
 String JobBean.setMessage(String message)
           
 void RenderingBean.setModel(ome.model.enums.RenderingModel model)
          Implemented as specified by the RenderingEngine interface.
 void RenderingBean.setOverlays(Map<byte[],Integer> overlays)
          Implemented as specified by the RenderingEngine interface.
 boolean ThumbnailBean.setPixelsId(long id)
           
 void RawPixelsBean.setPixelsId(long pixelsId, boolean bypassOriginalFile)
           
 void RawPixelsBean.setPlane(byte[] arg0, int arg1, int arg2, int arg3)
           
 void RenderingBean.setQuantizationMap(int w, ome.model.enums.Family family, double coefficient, boolean noiseReduction)
          Implemented as specified by the RenderingEngine interface.
 void RenderingBean.setQuantumStrategy(int bitResolution)
          Implemented as specified by the RenderingEngine interface.
 void RawPixelsBean.setRegion(int arg0, long arg1, byte[] arg2)
           
 void ThumbnailBean.setRenderingDefId(long id)
           
 void RawPixelsBean.setResolutionLevel(int resolutionLevel)
           
 void RenderingBean.setResolutionLevel(int resolutionLevel)
           
 void SearchBean.setReturnUnloaded(boolean returnUnloaded)
           
 void RenderingBean.setRGBA(int w, int red, int green, int blue, int alpha)
          Implemented as specified by the RenderingEngine interface.
 void RawPixelsBean.setRow(byte[] arg0, int arg1, int arg2, int arg3, int arg4)
           
 void RawPixelsBean.setStack(byte[] arg0, int arg1, int arg2, int arg3)
           
 String JobBean.setStatus(String status)
           
 String JobBean.setStatusAndMessage(String status, String message)
           
 void RawPixelsBean.setTile(byte[] data, int z, int c, int t, int x, int y, int w, int h)
           
 void RawPixelsBean.setTimepoint(byte[] arg0, int arg1)
           
 void SearchBean.setUseProjections(boolean useProjections)
           
 long RawFileBean.size()
           
 long JobBean.submit(ome.model.jobs.Job newJob)
           
 boolean ThumbnailBean.thumbnailExists(Integer sizeX, Integer sizeY)
           
 boolean RawFileBean.truncate(long length)
           
 void SearchBean.unordered()
           
 void RenderingBean.updateCodomainMap(CodomainMapContext mapCtx)
          Implemented as specified by the RenderingEngine interface.
 void RawFileBean.write(byte[] buf, long position, int length)
           
 

Uses of RolesAllowed in ome.services.delete
 

Methods in ome.services.delete with annotations of type RolesAllowed
 List<ome.model.IObject> DeleteBean.checkImageDelete(long id, boolean force)
           
 void DeleteBean.deleteChannels(long imageId)
           
 void DeleteBean.deleteImage(long id, boolean force)
           
 void DeleteBean.deleteImages(Set<Long> ids, boolean force)
           
 void DeleteBean.deleteImagesByDataset(long datasetId, boolean force)
           
 void DeleteBean.deletePlate(long plateId)
           
 void DeleteBean.deleteSettings(long imageId)
           
 List<ome.model.IObject> DeleteBean.previewImageDelete(long id, boolean force)
          This uses DeleteBean.IMAGE_QUERY to load all the subordinate metadata of the Image which will be deleted.
 

Uses of RolesAllowed in ome.services.projection
 

Methods in ome.services.projection with annotations of type RolesAllowed
 long ProjectionBean.projectPixels(long pixelsId, ome.model.enums.PixelsType pixelsType, int algorithm, int tStart, int tEnd, List<Integer> channels, int stepping, int zStart, int zEnd, String name)
           
 byte[] ProjectionBean.projectStack(long pixelsId, ome.model.enums.PixelsType pixelsType, int algorithm, int timepoint, int channelIndex, int stepping, int start, int end)
           
 

Uses of RolesAllowed in ome.services.sessions
 

Methods in ome.services.sessions with annotations of type RolesAllowed
 int SessionBean.closeSession(ome.model.meta.Session session)
           
 ome.model.meta.Session SessionBean.createSession(Principal principal, String credentials)
           
 ome.model.meta.Session SessionBean.createSessionWithTimeout(Principal principal, long milliseconds)
           
 ome.model.meta.Session SessionBean.createSessionWithTimeouts(Principal principal, long timeToLiveMilliseconds, long timeToIdleMilliseconds)
           
 ome.model.meta.Session SessionBean.createUserSession(long timeToLiveMs, long timeToIdleMs, String defaultGroup)
           
 Object SessionBean.getInput(String session, String key)
           
 Set<String> SessionBean.getInputKeys(String session)
           
 Map<String,Object> SessionBean.getInputs(String session)
           
 List<ome.model.meta.Session> SessionBean.getMyOpenAgentSessions(String agent)
           
 List<ome.model.meta.Session> SessionBean.getMyOpenClientSessions()
           
 List<ome.model.meta.Session> SessionBean.getMyOpenSessions()
           
 Object SessionBean.getOutput(String session, String key)
           
 Set<String> SessionBean.getOutputKeys(String session)
           
 Map<String,Object> SessionBean.getOutputs(String session)
           
 int SessionBean.getReferenceCount(String sessionUuid)
           
 ome.model.meta.Session SessionBean.getSession(String sessionUuid)
           
 void SessionBean.setInput(String session, String key, Object object)
           
 void SessionBean.setOutput(String session, String key, Object object)
           
 ome.model.meta.Session SessionBean.updateSession(ome.model.meta.Session session)
           
 

Uses of RolesAllowed in ome.services.sharing
 

Methods in ome.services.sharing with annotations of type RolesAllowed
 void ShareBean.activate(long shareId)
           
 ome.model.annotations.CommentAnnotation ShareBean.addComment(long shareId, String commentText)
           
 void ShareBean.addGuest(long shareId, String emailAddress)
           
 void ShareBean.addGuests(long shareId, String... emailAddresses)
           
<T extends ome.model.IObject>
void
ShareBean.addObject(long shareId, T object)
           
<T extends ome.model.IObject>
void
ShareBean.addObjects(long shareId, T... objects)
           
 ome.model.annotations.CommentAnnotation ShareBean.addReply(long shareId, String comment, ome.model.annotations.CommentAnnotation replyTo)
           
 void ShareBean.addUser(long shareId, ome.model.meta.Experimenter exp)
           
 void ShareBean.addUsers(long shareId, ome.model.meta.Experimenter... exps)
           
 void ShareBean.closeShare(long shareId)
           
<T extends ome.model.IObject>
long
ShareBean.createShare(String description, Timestamp expiration, List<T> items, List<ome.model.meta.Experimenter> exps, List<String> guests, boolean enabled)
           
 void ShareBean.deactivate()
           
 void ShareBean.deleteComment(ome.model.annotations.Annotation comment)
           
 Map<String,ome.model.meta.Experimenter> ShareBean.getActiveConnections(long shareId)
           
 Set<String> ShareBean.getAllGuests(long shareId)
           
 Set<ome.model.meta.Experimenter> ShareBean.getAllMembers(long shareId)
           
 Set<String> ShareBean.getAllUsers(long shareId)
           
 Map<Long,Long> ShareBean.getCommentCount(Set<Long> ids)
           
 List<ome.model.annotations.Annotation> ShareBean.getComments(long shareId)
           
<T extends ome.model.IObject>
Map<Class<T>,List<Long>>
ShareBean.getContentMap(long shareId)
           
<T extends ome.model.IObject>
List<T>
ShareBean.getContents(long shareId)
           
 int ShareBean.getContentSize(long shareId)
           
<T extends ome.model.IObject>
List<T>
ShareBean.getContentSubList(long shareId, int start, int finish)
           
 List<ome.model.meta.Event> ShareBean.getEvents(long shareId, ome.model.meta.Experimenter experimenter, Timestamp from, Timestamp to)
           
 Map<Long,Long> ShareBean.getMemberCount(Set<Long> shareIds)
           
 Set<ome.model.meta.Session> ShareBean.getMemberShares(boolean active)
           
 Set<ome.model.meta.Session> ShareBean.getMemberSharesFor(ome.model.meta.Experimenter user, boolean active)
           
 Set<ome.model.meta.Session> ShareBean.getOwnShares(boolean active)
           
 Map<String,ome.model.meta.Experimenter> ShareBean.getPastConnections(long shareId)
           
 ome.model.meta.Share ShareBean.getShare(long sessionId)
           
 Set<ome.model.meta.Session> ShareBean.getSharesOwnedBy(ome.model.meta.Experimenter user, boolean active)
           
 void ShareBean.invalidateConnection(long shareId, ome.model.meta.Experimenter exp)
           
 void ShareBean.removeGuest(long shareId, String emailAddress)
           
 void ShareBean.removeGuests(long shareId, String... emailAddresses)
           
<T extends ome.model.IObject>
void
ShareBean.removeObject(long shareId, T object)
           
<T extends ome.model.IObject>
void
ShareBean.removeObjects(long shareId, T... objects)
           
 void ShareBean.removeUser(long shareId, ome.model.meta.Experimenter exp)
           
 void ShareBean.removeUsers(long shareId, List<ome.model.meta.Experimenter> exps)
           
 void ShareBean.setActive(long shareId, boolean active)
           
 void ShareBean.setDescription(long shareId, String description)
           
 void ShareBean.setExpiration(long shareId, Timestamp expiration)
           
 



OmeroJava Api

Version: 4.3.4-dbcbce5a-b4

Copyright © 2009 The University of Dundee. All Rights Reserved.