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omero_model_ImageI class wrapper extends BlitzObjectWrapper.
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InstrumentWrapper |
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Boolean |
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ProxyObjectWrapper |
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Boolean |
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Dict |
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ImageStageLabelWrapper |
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String |
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DatasetWrapper |
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ProjectWrapper |
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ObjectiveSettingsWrapper |
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ImagingEnvironmentWrapper |
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Long |
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ProxyObjectWrapper |
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Tuple (FileAnnotationWrapper, [], []) |
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string or None |
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List of ChannelWrapper |
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List of strings |
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String |
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Boolean |
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List of BlitzObjectWrapper |
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BlitzObjectWrapper |
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Boolean |
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String or (size, data generator) |
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List of Strings |
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(String, String) |
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PIL Image. |
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Dict |
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PIL Image |
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String |
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String |
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int |
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int |
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float |
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float |
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float |
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float |
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int |
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int |
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int |
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int |
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int |
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Boolean |
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Dict |
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Dict |
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Inherited from Inherited from Inherited from |
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ImageWrapper |
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Inherited from |
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_re = None hash(x) |
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_pd = None hash(x) |
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_rm = {}
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_pixels = None hash(x) |
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_archivedFileCount = None hash(x) |
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_pr = None hash(x) |
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_invertedAxis = False hash(x) |
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PROJECTIONS = {'normal':-1, 'intmax': omero.constants.projecti
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PLANEDEF = omero.romio.XY
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LINE_PLOT_DTYPES = {(4, True, True): 'f', (2, False, False): '
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LP_PALLETE = [0, 0, 0, 0, 0, 0, 255, 255, 255]
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LP_TRANSPARENT = 0
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LP_BGCOLOR = 1
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LP_FGCOLOR = 2
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Inherited from |
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Inherited from |
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Creates a new Image wrapper with the image specified by pixels ID
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Initialisation method which is implemented by subclasses to set their class variables etc.
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Loads the object that is wrapped by this class. This includes linked objects. This method can be overwritten by subclasses that want to specify how/which linked objects are loaded.
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Returns the Instrument for this image (or None) making sure the instrument is loaded.
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Checks that pixels are loaded
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Return a rendering def ID based on custom logic.
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Called whenever a reset defaults is called by the preparation of the rendering engine or the thumbnail bean.
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Prepare the rendering engine with pixels ID and existing or new rendering def.
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Checks that the rendering engine is prepared, calling _prepareRE if needed. Used by the assert_re method to wrap calls requiring rendering engine
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Creates a dict representation of the Image, including author and date info.
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Returns the stage label or None
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Provides a truncated name of the image. E.g. ...catedNameOfTheImage.tiff
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Returns 'Firstname Lastname' of image owner
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XXX: Deprecated since 4.3.2, use listParents(). (See #6660) Gets the Dataset that image is in, or None. Returns None if Image is in more than one Dataset.
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Gets the Project that image is in, or None. TODO: Assumes image is in only 1 Project. Why not use getAncestory()[-1] Returns None if Image is in more than one Dataset & Project.
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Gets the Ojbective Settings of the Image, or None
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Gets the Imaging Environment of the Image, or None
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Returns the Primary Pixels ID for the image.
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Prepares Thumbnail Store for the image.
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Gets original metadata from the file annotation. Returns the File Annotation, list of Global Metadata, list of Series Metadata in a tuple. Metadata lists are lists of (key, value) tuples.
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Returns a string holding a rendered JPEG of the projected image, sized to mimic a thumbnail. This is an 'internal' method of this class, used to generate a thumbnail from a full-sized projected image (since thumbnails don't support projection). SetProjection should be called before this method is called, so that this returns a projected, scaled image.
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Returns a string holding a rendered JPEG of the thumbnail.
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Returns (min, max) values for the pixels type of this image. TODO: Does not handle floats correctly, though.
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Loads pixels and returns object in a PixelsWrapper
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Returns a list of Channels, each initialised with rendering engine
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Sets the active channels on the rendering engine. Also sets rendering windows and channel colors (for channels that are active)
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Returns list of available keys for projection. E.g. ['intmax', 'intmean']
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Returns the current projection option (checking it is valid).
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Sets the current projection option.
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Returns the inverted axis flag
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Sets the inverted axis flag
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Grab a horizontal or vertical line from the image pixel data, for the specified channels (or 'active' if not specified) and using the specified range (or 1:1 relative to the image size). Axis may be 'h' or 'v', for horizontal or vertical respectively.
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Grab a horizontal line from the image pixel data, for the specified channels (or active ones)
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Grab a horizontal line from the image pixel data, for the specified channels (or active ones)
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Gets a list of available rendering models.
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Get the current rendering model.
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Returns True if the current rendering model is 'greyscale'
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Returns the data from rendering the bird's eye view of the image.
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Return the data from rendering a region of an image plane. NB. Projection not supported by the API currently.
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Return the data from rendering image, compressed (and projected). Projection (or not) is specified by calling setProjection before renderJpeg.
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Exports the OME-TIFF representation of this image.
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Wraps text into lines that are less than a certain width (when rendered in specified font)
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Creates a movie file from this image. TODO: makemovie import is commented out in 4.2+
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Render the Image, (projected) and compressed. For projection, call setProjection before renderImage.
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Prepares a jpeg representation of a 2d grid holding a render of each channel, along with one for all channels at the set Z and T points.
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Returns a dict of layout parameters for generating split channel image. E.g. row count, column count etc. for greyscale and color layouts.
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Prepares a PIL Image with a 2d grid holding a render of each channel, along with one for all channels at the set Z and T points.
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Common part of horizontal and vertical line plot rendering.
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Draws the Row plot as a gif file. Returns gif data.
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Draws the Column plot as a gif file. Returns gif data.
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Returns the last used value of Z (E.g. for renderingJpeg or line plot) Returns 0 if these methods not been used yet. TODO: How to get default-Z?
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Returns the last used value of T (E.g. for renderingJpeg or line plot) Returns 0 if these methods not been used yet. TODO: How to get default-T?
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Gets the default Z index from the rendering engine
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Gets the default T index from the rendering engine
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Gets the physical size X of pixels in microns
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Gets the physical size X of pixels in microns
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Gets the physical size Y of pixels in microns
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Gets the physical size Z of pixels in microns
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Gets width (size X) of the image (in pixels)
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Gets height (size Y) of the image (in pixels)
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Gets Z count of the image
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Gets T count of the image
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Gets C count of the image (number of channels)
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Removes specific color settings from channels
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Returns a map of rendering options not stored in rendering settings.
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Loads rendering options from an Annotation on the Image.
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Loads rendering options from an Annotation on the Image and applies them to the Image.
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Limited support for saving the current prepared image rendering defs. Right now only channel colors are saved back.
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Returns the number of Original 'archived' Files linked to primary pixels. Value is cached |
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PROJECTIONS
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LINE_PLOT_DTYPES
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