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Worker Thread executing tasks from a given tasks queue |
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ThreadPool Pool of threads consuming tasks from a queue |
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MeasurementError Raised by the analysis or measurement context when an error condition is reached. |
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DownloadingOriginalFileProvider Provides original file data by downloading it from an OMERO raw file store. |
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AbstractPlateAnalysisCtx Abstract class which aggregates and represents all measurement runs made on a given Plate. |
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MIASPlateAnalysisCtx MIAS dataset concrete class implementation of an analysis context. |
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FlexPlateAnalysisCtx Flex dataset concrete class implementation of an analysis context. |
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InCellPlateAnalysisCtx InCell dataset concrete class implementation of an analysis context. |
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PlateAnalysisCtxFactory The plate analysis context factory is responsible for detecting and returning a plate analysis context instance for a given plate. |
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MeasurementParsingResult Holds the results of a measurement parsing event. |
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AbstractMeasurementCtx Abstract class which aggregates and represents all the results produced from a given measurement run. |
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MIASMeasurementCtx MIAS measurements are a set of tab delimited text files per well. |
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FlexMeasurementCtx Flex measurements are located deep within a ".res" XML file container and contain no ROI. |
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InCellMeasurementCtx InCell Analyzer measurements are located deep within an XML file container. |
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log = logging.getLogger("omero.util.populate_roi")
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thread_pool = None hash(x) |
Imports: exceptions, tempfile, logging, time, sys, csv, re, Thread, StringIO, getpass, getopt, GetoptError, Queue, omero, rdouble, rstring, rint, OriginalFileI, PlateI, PlateAnnotationLinkI, ImageI, FileAnnotationI, RoiI, EllipseI, PointI, ImageColumn, WellColumn, RoiColumn, LongColumn, DoubleColumn, create_path, remove_path, client, XML, Element, SubElement, ElementTree, dump, iterparse
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Prints usage so that we don't have to. :) |
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