Omero API

OMERO API Reference Documentation. See:
          Description

A. Core System
ome.api Contains the central verbs of the Omero System.
ome.system Provides the necessary container structure for the entire Omero system.

 

C. Client Packages
pojos  
pojos.util  

 

D. Server Packages
ome.annotations Runtime source annotation package for the OMERO server This includes classes that annotate source code and check metadata at runtime for server API calls.
ome.api.local Non-client service API for OMERO This includes interfaces for the local administration of the OMERO server.
ome.io.bioformats  
ome.io.messages  
ome.io.nio New Input/Output handling for the OMERO server This includes interfaces/classes for the input and output handling of data within the OMERO server.
ome.logic The central repository of implementations which will be accessible through this server.
ome.security JBoss and OMERO security handling This includes classes that provide security for the execution and usage of the OMERO server on a JBoss platform.
ome.security.auth  
ome.security.auth.providers  
ome.security.basic Basic OMERO security contextual classes Basic classes that provide security context objects necessary to secure the implementation of the OMERO server on a JBoss platform.
ome.security.sharing  
ome.services Base services package for OMERO API services This includes classes that implement OMERO API services described as interfaces in the OMERO Common component.
ome.services.db  
ome.services.delete Implementations of the ome.api.IDelete service.
ome.services.eventlogs  
ome.services.export Helpers for implementing the necessary interfaces from Bio-Formats for mapping OMERO objects (ome.model.*) to OME-XML and OME-TIFF
ome.services.formats  
ome.services.fulltext All necessary classes for background indexing of metadata and attached binary files.
ome.services.fulltext.bridges Custom FieldBridge implementations which can be configured to be run on each indexing activity.
ome.services.graphs Server classes for handling complicated graphs of model objects.
ome.services.messages Message implementations used throughout the server for internal communication.
ome.services.messages.stats  
ome.services.pixeldata  
ome.services.procs Internal process and process management This includes interfaces and classes that provide thread process management for internal processes critical to the operation of the OMERO server.
ome.services.procs.scripts Script processor infrastructure.
ome.services.projection  
ome.services.query facilitates the creation of Hibernate Queries and Criteria.
ome.services.roi  
ome.services.scheduler  
ome.services.scripts  
ome.services.search Internal search implementation classes.
ome.services.sessions  
ome.services.sessions.events  
ome.services.sessions.state  
ome.services.sessions.stats  
ome.services.sharing ome.api.IShare support infrastructure.
ome.services.sharing.data  
ome.services.throttling  
ome.services.util Helper classes to support OMERO service beans Instead of abstract classes, IOC methods and dependency injection is used to provide service interception for the Service (binary) bean classes.
ome.tools OMERO Server Utility and Spring/Hibernate Tools Classes/Interfaces that implement File, Hibernate, Spring, Annotation, Hierarchy, etc. method mechanics for the OMERO server Related Documentation For more information, please see: TODO
ome.tools.hibernate Hibernate specific tools for the OMERO Server Classes/Interfaces that implement Hibernate method mechanics for the OMERO server Related Documentation For more information, please see: TODO
ome.tools.lsid Life Science Identifier (LSID) tools Classes/Interfaces that manage conversions and creation of LSID unique identifiers Related Documentation For more information, please see: TODO
ome.tools.spring OMERO Server tools specific to Spring Classes/Interfaces that implement AOP, Post-processing injection, session flushing, and factory management.

 

E. Blitz Server
ome.services.blitz  
ome.services.blitz.fire  
ome.services.blitz.gateway  
ome.services.blitz.gateway.services  
ome.services.blitz.gateway.services.impl  
ome.services.blitz.gateway.services.util  
ome.services.blitz.impl  
ome.services.blitz.measurements  
ome.services.blitz.redirect  
ome.services.blitz.repo  
ome.services.blitz.util  

 

E. Blitz Client
omero  
omero.grid  
omero.model  
omero.sys  
omero.util  
omerojava.util  

 

G. Rendering Engine
omeis.providers.re Red-Green-Blue (RGB) data structures and Image Rendering Service This package provides basic data structures to represent an RGB pixel set and provide a service for the rendering of this pixel set.
omeis.providers.re.codomain Provides codomain pixel set data structures for Maps and Contexts.
omeis.providers.re.data Provides classes needed to define XY planes within a dynamic 3D context.
omeis.providers.re.metadata  
omeis.providers.re.quantum  

 

H. Utilities
ome.util.math.geom2D Plane geometry data structures for OMERO This includes a several implementations of various two dimensional simple geometry classes to represent these structures within the OMERO system.
ome.util.mem Dynamic object instance and state management for OMERO This includes various implementations of copy and clonable operations.
ome.util.messages Messages package for specialized exception handling for OMERO.

 

Other Packages
ome.formats  
ome.formats.enums  
ome.formats.enums.handler  
ome.formats.importer  
ome.formats.importer.util  
ome.formats.model  
ome.formats.model.handler  
org.hibernate.stat  

 

OMERO API Reference Documentation.

OMERO API Reference Documentation. For complete documentation, see openmicroscopy.org

Main OMERO API [4.3.3-00d1137e-b2894] Documentation

The Javadocs provided compose the bulk of the OMERO API documentation. However, the OmeroPy documentation is available under epydocs and the slice2html generated documentation is available from slice2html. Where possible links between the various pieces of API references have been added. For an overview or getting started guide, see the links below.

Related Documentation

For overviews, tutorials, examples, guides, and tool documentation, please see:



OmeroJava Api

Version: 4.3.3-00d1137e-b2894

Copyright © 2009 The University of Dundee. All Rights Reserved.