Uses of Class
ome.annotations.NotNull

Packages that use NotNull
ome.api Contains the central verbs of the Omero System. 
ome.logic The central repository of implementations which will be accessible through this server. 
ome.services.sessions   
ome.services.sharing ome.api.IShare support infrastructure. 
 

Uses of NotNull in ome.api
 

Method parameters in ome.api with annotations of type NotNull
 ome.model.annotations.CommentAnnotation IShare.addComment(long shareId, String comment)
          Creates comment for share.
 void IAdmin.addGroupOwners(ome.model.meta.ExperimenterGroup group, ome.model.meta.Experimenter... owner)
          adds the given users to the owner list for this group.
 void IAdmin.addGroupOwners(ome.model.meta.ExperimenterGroup group, ome.model.meta.Experimenter... owner)
          adds the given users to the owner list for this group.
 void IAdmin.addGroups(ome.model.meta.Experimenter user, ome.model.meta.ExperimenterGroup... groups)
          adds a user to the given groups.
 void IAdmin.addGroups(ome.model.meta.Experimenter user, ome.model.meta.ExperimenterGroup... groups)
          adds a user to the given groups.
<T extends ome.model.IObject>
void
IShare.addObject(long shareId, T object)
          Adds new item to share.
<T extends ome.model.IObject>
void
IShare.addObjects(long shareId, T... objects)
          Adds new items to share.
 void Search.addOrderByAsc(String path)
          A path from the target entity which will be added to the current stack of order statements applied to the query.
 void Search.addOrderByDesc(String path)
          A path from the target entity which will be added to the current stack of order statements applied to the query.
 ome.model.annotations.CommentAnnotation IShare.addReply(long shareId, String comment, ome.model.annotations.CommentAnnotation replyTo)
          Creates comment which replies to an existing comment.
 ome.model.annotations.CommentAnnotation IShare.addReply(long shareId, String comment, ome.model.annotations.CommentAnnotation replyTo)
          Creates comment which replies to an existing comment.
 Map<Boolean,List<Long>> IRenderingSettings.applySettingsToDataset(long from, long to)
          Applies rendering settings to all images in a given Dataset.
 Map<Boolean,List<Long>> IRenderingSettings.applySettingsToDataset(long from, long to)
          Applies rendering settings to all images in a given Dataset.
 boolean IRenderingSettings.applySettingsToImage(long from, long to)
          Applies rendering settings to a given Image.
 boolean IRenderingSettings.applySettingsToImage(long from, long to)
          Applies rendering settings to a given Image.
 Map<Boolean,List<Long>> IRenderingSettings.applySettingsToImages(long from, List<Long> to)
          Applies rendering settings to a given Image.
 Map<Boolean,List<Long>> IRenderingSettings.applySettingsToImages(long from, List<Long> to)
          Applies rendering settings to a given Image.
 boolean IRenderingSettings.applySettingsToPixels(long from, long to)
          Applies rendering settings to a given Pixels.
 boolean IRenderingSettings.applySettingsToPixels(long from, long to)
          Applies rendering settings to a given Pixels.
 Map<Boolean,List<Long>> IRenderingSettings.applySettingsToProject(long from, long to)
          Applies rendering settings to all images in all Datasets of a given Project.
 Map<Boolean,List<Long>> IRenderingSettings.applySettingsToProject(long from, long to)
          Applies rendering settings to all images in all Datasets of a given Project.
<T extends ome.model.IObject>
Map<Boolean,List<Long>>
IRenderingSettings.applySettingsToSet(long from, Class<T> type, Set<Long> nodeIds)
          Applies rendering settings to one or many containers.
<T extends ome.model.IObject>
Map<Boolean,List<Long>>
IRenderingSettings.applySettingsToSet(long from, Class<T> type, Set<Long> nodeIds)
          Applies rendering settings to one or many containers.
 void IAdmin.changeGroup(ome.model.IObject iObject, String groupName)
          call details.setGroup() on this instance.
 void IAdmin.changeGroup(ome.model.IObject iObject, String groupName)
          call details.setGroup() on this instance.
 void IAdmin.changeOwner(ome.model.IObject iObject, String omeName)
          call details.setOwner() on this instance.
 void IAdmin.changeOwner(ome.model.IObject iObject, String omeName)
          call details.setOwner() on this instance.
 void IAdmin.changePasswordWithOldPassword(String oldPassword, String newPassword)
          change the password for the current user by passing the old password.
 void IAdmin.changePermissions(ome.model.IObject iObject, ome.model.internal.Permissions perms)
          call defaults.setPermissions() on this instance.
 void IAdmin.changePermissions(ome.model.IObject iObject, ome.model.internal.Permissions perms)
          call defaults.setPermissions() on this instance.
 void IAdmin.changeUserPassword(String omeName, String newPassword)
          change the password for the a given user.
 int ISession.closeSession(ome.model.meta.Session session)
          Closes session and releases all resources.
 Long IMetadata.countAnnotationsUsedNotOwned(Class annotationType, long userID)
          Counts the number of annotation of a given type used by the specified user but not owned by the user.
 Long IMetadata.countSpecifiedAnnotations(Class type, Set<String> include, Set<String> exclude, ome.parameters.Parameters options)
          Counts the number of annotation of a given type.
<T extends ome.model.IObject>
T
IContainer.createDataObject(T object, ome.parameters.Parameters options)
          Creates the specified data object.
 ome.model.IObject[] IContainer.createDataObjects(ome.model.IObject[] dataObjects, ome.parameters.Parameters options)
          convenience method to save network calls.
 long IAdmin.createExperimenter(ome.model.meta.Experimenter experimenter, ome.model.meta.ExperimenterGroup defaultGroup, ome.model.meta.ExperimenterGroup... otherGroups)
          create and return a new user in the given groups.
 long IAdmin.createExperimenter(ome.model.meta.Experimenter experimenter, ome.model.meta.ExperimenterGroup defaultGroup, ome.model.meta.ExperimenterGroup... otherGroups)
          create and return a new user in the given groups.
 long IAdmin.createExperimenterWithPassword(ome.model.meta.Experimenter experimenter, String password, ome.model.meta.ExperimenterGroup defaultGroup, ome.model.meta.ExperimenterGroup... otherGroups)
          create and return a new user in the given groups with password.
 long IAdmin.createExperimenterWithPassword(ome.model.meta.Experimenter experimenter, String password, ome.model.meta.ExperimenterGroup defaultGroup, ome.model.meta.ExperimenterGroup... otherGroups)
          create and return a new user in the given groups with password.
 ome.model.display.RenderingDef IRenderingSettings.createNewRenderingDef(ome.model.core.Pixels pixels)
          Creates a new rendering definition object along with its sub-objects.
 ome.model.meta.Session ISession.createSession(Principal principal, String credentials)
          Creates a new session and returns it to the user.
 ome.model.meta.Session ISession.createSessionWithTimeout(Principal principal, long timeToLiveMilliseconds)
          Allows an admin to create a Session for the give Principal
 ome.model.meta.Session ISession.createSessionWithTimeouts(Principal principal, long timeToLiveMilliseconds, long timeToIdleMilliseconds)
          Allows an admin to create a Session for the give Principal
<T extends ome.model.IObject>
long
IShare.createShare(String description, Timestamp expiration, List<T> items, List<ome.model.meta.Experimenter> exps, List<String> guests, boolean enabled)
          Creates share with all related: items, members, and guests.
 long IAdmin.createSystemUser(ome.model.meta.Experimenter newSystemUser)
          create and return a new system user.
 void ThumbnailStore.createThumbnailsByLongestSideSet(Integer size, Set<Long> pixelsIds)
          Creates thumbnails for a number of pixels sets using a given set of rendering settings (RenderingDef) in the on-disk cache.
 long IAdmin.createUser(ome.model.meta.Experimenter newUser, String group)
          create and return a new user.
 long IAdmin.createUser(ome.model.meta.Experimenter newUser, String group)
          create and return a new user.
 void IShare.deleteComment(ome.model.annotations.Annotation comment)
          Deletes comment from the database.
 void IContainer.deleteDataObject(ome.model.IObject dataObject, ome.parameters.Parameters options)
          Deletes a data object.
 void IContainer.deleteDataObjects(ome.model.IObject[] dataObjects, ome.parameters.Parameters options)
          convenience method to save network calls.
<T extends ome.model.IEnum>
void
ITypes.deleteEnumeration(T oEnum)
          deletes enumeration value specified by object
 void IAdmin.deleteExperimenter(ome.model.meta.Experimenter user)
          removes a user by removing the password information for that user as well as all GroupExperimenterMap instances.
 void IAdmin.deleteGroup(ome.model.meta.ExperimenterGroup group)
          removes a group by first removing all users in the group, and then deleting the actual ExperimenterGroup instance.
 void IDelete.deleteImages(Set<Long> ids, boolean force)
          Deletes several Image instances within a single transaction via the IDelete.deleteImage(long, boolean) method.
<T extends ome.model.IObject>
T
IQuery.find(Class<T> klass, long id)
          lookup an entity by class and id.
<T extends ome.model.IObject>
List<T>
IQuery.findAll(Class<T> klass, ome.parameters.Filter filter)
          lookup all entities that belong to this class and match filter.
<T extends ome.model.IObject>
List<T>
IQuery.findAllByExample(T example, ome.parameters.Filter filter)
          search based on provided example entity.
<T extends ome.model.IObject>
List<T>
IQuery.findAllByFullText(Class<T> type, String query, ome.parameters.Parameters parameters)
          executes a full text search based on Lucene.
<T extends ome.model.IObject>
List<T>
IQuery.findAllByFullText(Class<T> type, String query, ome.parameters.Parameters parameters)
          executes a full text search based on Lucene.
<T extends ome.model.IObject>
List<T>
IQuery.findAllByQuery(String queryName, ome.parameters.Parameters parameters)
          executes the stored query with the given name.
<T extends ome.model.IObject>
List<T>
IQuery.findAllByString(Class<T> klass, String field, String stringValue, boolean caseSensitive, ome.parameters.Filter filter)
          search a given field matching against a String.
<T extends ome.model.IObject>
List<T>
IQuery.findAllByString(Class<T> klass, String field, String stringValue, boolean caseSensitive, ome.parameters.Filter filter)
          search a given field matching against a String.
<T extends ome.model.IObject>
T
IQuery.findByExample(T example)
          search based on provided example entity.
<T extends ome.model.IObject>
T
IQuery.findByQuery(String queryName, ome.parameters.Parameters parameters)
          executes the stored query with the given name.
<T extends ome.model.IObject>
T
IQuery.findByString(Class<T> klass, String field, String value)
          search a given field matching against a String.
<T extends ome.model.IObject>
T
IQuery.findByString(Class<T> klass, String field, String value)
          search a given field matching against a String.
<T extends ome.model.IObject>
Set<ome.model.IObject>
IContainer.findContainerHierarchies(Class<T> rootNodeType, Set<Long> imagesIds, ome.parameters.Parameters options)
          Retrieves hierarchy trees in various hierarchies that contain the specified Images.
<T extends ome.model.IObject>
Set<ome.model.IObject>
IContainer.findContainerHierarchies(Class<T> rootNodeType, Set<Long> imagesIds, ome.parameters.Parameters options)
          Retrieves hierarchy trees in various hierarchies that contain the specified Images.
 String ILdap.findDN(String username)
          Searchs unique Distinguished Name - String in LDAP for Common Name equals username.
 ome.model.meta.Experimenter ILdap.findExperimenter(String username)
          Searchs Experimenter by unique Distinguished Name - String in LDAP for Common Name equals username.
<T extends ome.model.IObject>
T
IQuery.get(Class<T> klass, long id)
          lookup an entity by class and id.
 Map<String,ome.model.meta.Experimenter> IShare.getActiveConnections(long shareId)
          Gets actual active connections to share.
 Map IContainer.getCollectionCount(String type, String property, Set<Long> ids, ome.parameters.Parameters options)
          Counts the number of members in a collection for a given object.
 Map IContainer.getCollectionCount(String type, String property, Set<Long> ids, ome.parameters.Parameters options)
          Counts the number of members in a collection for a given object.
 Map IContainer.getCollectionCount(String type, String property, Set<Long> ids, ome.parameters.Parameters options)
          Counts the number of members in a collection for a given object.
 Map<Long,Long> IShare.getCommentCount(Set<Long> shareIds)
          Returns a map from share id to comment count.
 String IConfig.getConfigValue(String key)
          retrieve a configuration value from the backend store.
 List<ome.model.meta.Event> IShare.getEvents(long shareId, ome.model.meta.Experimenter experimenter, Timestamp from, Timestamp to)
          Gets events for share per experimenter for period of time.
<T extends ome.model.IObject>
Set<ome.model.core.Image>
IContainer.getImages(Class<T> rootNodeType, Set<Long> rootNodeIds, ome.parameters.Parameters options)
          Retrieve a user's (or all users') images within any given container.
<T extends ome.model.IObject>
Set<ome.model.core.Image>
IContainer.getImages(Class<T> rootNodeType, Set<Long> rootNodeIds, ome.parameters.Parameters options)
          Retrieve a user's (or all users') images within any given container.
 Map<Long,Long> IShare.getMemberCount(Set<Long> shareIds)
          Returns a map from share id to the count of total members (including the owner).
 Set<ome.model.meta.Session> IShare.getMemberSharesFor(ome.model.meta.Experimenter user, boolean onlyActive)
          Gets all shares where given Experimenter is a member.
 Map<String,ome.model.meta.Experimenter> IShare.getPastConnections(long shareId)
          Gets previous connections to share.
 int ISession.getReferenceCount(String sessionUuid)
          Retrieves the current reference count for the given uuid.
 ome.model.display.RenderingDef IRenderingSettings.getRenderingSettings(long pixelsId)
          Returns the default rendering settings for a given pixels for the current user.
 ome.model.meta.Session ISession.getSession(String sessionUuid)
          Retrieves the session associated with this uuid, updating the last access time as well.
 Set<ome.model.meta.Session> IShare.getSharesOwnedBy(ome.model.meta.Experimenter user, boolean onlyActive)
          Gets all shares owned by the given Experimenter.
 Map<Long,Long> IMetadata.getTaggedObjectsCount(Set<Long> tagIds, ome.parameters.Parameters options)
          Returns a map whose key is a tag's id and the value the number of Projects, Datasets, and Images linked to that tag.
 Map<Long,byte[]> ThumbnailStore.getThumbnailByLongestSideSet(Integer size, Set<Long> pixelsIds)
          Retrieves a number of thumbnails for pixels sets using given sets of rendering settings (RenderingDef).
 Map<Long,byte[]> ThumbnailStore.getThumbnailSet(Integer sizeX, Integer sizeY, Set<Long> pixelsIds)
          Retrieves a number of thumbnails for pixels sets using given sets of rendering settings (RenderingDef).
 void IShare.invalidateConnection(long shareId, ome.model.meta.Experimenter exp)
          Makes the connection invalid for share for specifiec user.
 ome.model.ILink[] IContainer.link(ome.model.ILink[] dataObjectLinks, ome.parameters.Parameters options)
          Convenience method for creating links.
<A extends ome.model.annotations.Annotation>
Set<A>
IMetadata.loadAnnotation(Set<Long> annotationIds)
          Loads the specified annotations.
<T extends ome.model.IObject,A extends ome.model.annotations.Annotation>
Map<Long,Set<A>>
IMetadata.loadAnnotations(Class<T> nodeType, Set<Long> rootNodeIds, Set<String> annotationType, Set<Long> annotatorIds, ome.parameters.Parameters options)
          Loads all the annotations of given types, that have been attached to the specified rootNodes for the specified annotatorIds.
<T extends ome.model.IObject,A extends ome.model.annotations.Annotation>
Map<Long,Set<A>>
IMetadata.loadAnnotations(Class<T> nodeType, Set<Long> rootNodeIds, Set<String> annotationType, Set<Long> annotatorIds, ome.parameters.Parameters options)
          Loads all the annotations of given types, that have been attached to the specified rootNodes for the specified annotatorIds.
<T extends ome.model.IObject,A extends ome.model.annotations.Annotation>
Map<Long,Set<A>>
IMetadata.loadAnnotations(Class<T> nodeType, Set<Long> rootNodeIds, Set<String> annotationType, Set<Long> annotatorIds, ome.parameters.Parameters options)
          Loads all the annotations of given types, that have been attached to the specified rootNodes for the specified annotatorIds.
 Set<ome.model.IObject> IMetadata.loadAnnotationsUsedNotOwned(Class annotationType, long userID)
          Loads the annotations of a given type used by the specified user but not owned by the user.
 Set<ome.model.core.LogicalChannel> IMetadata.loadChannelAcquisitionData(Set<Long> ids)
          Loads the logical channels and the acquisition metadata related to them.
<T extends ome.model.IObject>
Set<ome.model.IObject>
IContainer.loadContainerHierarchy(Class<T> rootNodeType, Set<Long> rootNodeIds, ome.parameters.Parameters options)
          Retrieves hierarchy trees rooted by a given node (unless orphan is specified -- See below) This method also retrieves the Experimenters linked to the objects in the tree.
<A extends ome.model.annotations.Annotation>
Set<A>
IMetadata.loadSpecifiedAnnotations(Class type, Set<String> include, Set<String> exclude, ome.parameters.Parameters options)
          Loads the annotations of a given type.
 Map<Long,Set<ome.model.IObject>> IMetadata.loadTagContent(Set<Long> tagIds, ome.parameters.Parameters options)
          Loads the Tag Set if the id is specified otherwise loads all the Tag Set.
 ome.model.meta.Experimenter IAdmin.lookupExperimenter(String omeName)
          look up an Experimenter and all related groups by name.
 ome.model.meta.ExperimenterGroup IAdmin.lookupGroup(String groupName)
          look up an ExperimenterGroup and all contained users by name.
 List<Object[]> IQuery.projection(String query, ome.parameters.Parameters parameters)
          Return a list of Java Object instances (not IObject instances).
<T extends ome.model.IObject>
T
IQuery.refresh(T iObject)
          refreshes an entire IObject graph, recursive loading all data for the managed instances in the graph from the database.
 void IAdmin.removeGroupOwners(ome.model.meta.ExperimenterGroup group, ome.model.meta.Experimenter... owner)
          removes the given users from the owner list for this group.
 void IAdmin.removeGroupOwners(ome.model.meta.ExperimenterGroup group, ome.model.meta.Experimenter... owner)
          removes the given users from the owner list for this group.
 void IAdmin.removeGroups(ome.model.meta.Experimenter user, ome.model.meta.ExperimenterGroup... groups)
          removes a user from the given groups.
 void IAdmin.removeGroups(ome.model.meta.Experimenter user, ome.model.meta.ExperimenterGroup... groups)
          removes a user from the given groups.
<T extends ome.model.IObject>
void
IShare.removeObject(long shareId, T object)
          Removes existing item from the share.
<T extends ome.model.IObject>
void
IShare.removeObjects(long shareId, T... objects)
          Remove existing items from the share.
 void IRenderingSettings.resetDefaults(ome.model.display.RenderingDef def, ome.model.core.Pixels pixels)
          Resets the given rendering settings to those that are specified by the rendering engine intelligent pretty good image (PG) logic for the pixels set linked to that set of rendering settings.
 void IRenderingSettings.resetDefaults(ome.model.display.RenderingDef def, ome.model.core.Pixels pixels)
          Resets the given rendering settings to those that are specified by the rendering engine intelligent pretty good image (PG) logic for the pixels set linked to that set of rendering settings.
<T extends ome.model.IObject>
Set<Long>
IRenderingSettings.resetDefaultsByOwnerInSet(Class<T> type, Set<Long> nodeIds)
          Resets the rendering settings of a given group of containers based on the owner's (essentially a copy).
 void IRenderingSettings.resetDefaultsForPixels(long pixelsId)
          Resets a Pixels' default rendering settings back to those that are specified by the rendering engine intelligent pretty good image (PG) logic.
 Set<Long> IRenderingSettings.resetDefaultsInDataset(long dataSetId)
          Resets a dataset's rendering settings back to those that are specified by the rendering engine intelligent pretty good image (PG) logic.
 void IRenderingSettings.resetDefaultsInImage(long imageId)
          Resets an image's default rendering settings back to those that are specified by the rendering engine intelligent pretty good image (PG) logic.
<T extends ome.model.IObject>
Set<Long>
IRenderingSettings.resetDefaultsInSet(Class<T> type, Set<Long> nodeIds)
          Resets a rendering settings back to one or many containers that are specified by the rendering engine intelligent pretty good image (PG) logic.
 ome.model.display.RenderingDef IRenderingSettings.resetDefaultsNoSave(ome.model.display.RenderingDef def, ome.model.core.Pixels pixels)
          Resets the given rendering settings to those that are specified by the rendering engine intelligent pretty good image (PG) logic for the pixels set linked to that set of rendering settings.
 ome.model.display.RenderingDef IRenderingSettings.resetDefaultsNoSave(ome.model.display.RenderingDef def, ome.model.core.Pixels pixels)
          Resets the given rendering settings to those that are specified by the rendering engine intelligent pretty good image (PG) logic for the pixels set linked to that set of rendering settings.
<T extends ome.model.IObject>
Set<Long>
IRenderingSettings.resetMinMaxInSet(Class<T> type, Set<Long> nodeIds)
          Resets a the channel windows for one or many containers back to their global minimum and global maximum for the channel.
 Collection IContainer.retrieveCollection(ome.model.IObject dataObject, String collectionName, ome.parameters.Parameters options)
          Retrieves a collection with all members initialized ("loaded").
 Collection IContainer.retrieveCollection(ome.model.IObject dataObject, String collectionName, ome.parameters.Parameters options)
          Retrieves a collection with all members initialized ("loaded").
 List<ome.model.meta.Experimenter> ILdap.searchByAttribute(String dn, String attribute, String value)
          Searchs all Experimenter in LDAP for specyfied attribute
 List<ome.model.meta.Experimenter> ILdap.searchByAttribute(String dn, String attribute, String value)
          Searchs all Experimenter in LDAP for specyfied attribute
 List<ome.model.meta.Experimenter> ILdap.searchByAttribute(String dn, String attribute, String value)
          Searchs all Experimenter in LDAP for specyfied attribute
 List<ome.model.meta.Experimenter> ILdap.searchByAttributes(String dn, String[] attributes, String[] values)
          Searchs all Experimenter in LDAP for specyfied attributes.
 List<ome.model.meta.Experimenter> ILdap.searchByAttributes(String dn, String[] attributes, String[] values)
          Searchs all Experimenter in LDAP for specyfied attributes.
 List<ome.model.meta.Experimenter> ILdap.searchByAttributes(String dn, String[] attributes, String[] values)
          Searchs all Experimenter in LDAP for specyfied attributes.
 ome.model.meta.Experimenter ILdap.searchByDN(String userdn)
          Searchs one Experimenter in LDAP for specyfied Distinguished Name - String
 List<String> ILdap.searchDnInGroups(String attr, String value)
          Searchs Distinguished Name - String in groups
 List<String> ILdap.searchDnInGroups(String attr, String value)
          Searchs Distinguished Name - String in groups
 void IConfig.setConfigValue(String key, String value)
          set a configuration value in the backend store.
 boolean IConfig.setConfigValueIfEquals(String key, String value, String test)
          Calls IConfig.setConfigValue(String, String) if and only if the configuration property is currently equal to the test argument.
 void IAdmin.setDefaultGroup(ome.model.meta.Experimenter user, ome.model.meta.ExperimenterGroup group)
          sets the default group for a given user.
 void IAdmin.setDefaultGroup(ome.model.meta.Experimenter user, ome.model.meta.ExperimenterGroup group)
          sets the default group for a given user.
 void ILdap.setDN(Long experimenterID, String dn)
          Searchs all Experimenter in LDAP for objectClass = person
 void ILdap.setDN(Long experimenterID, String dn)
          Searchs all Experimenter in LDAP for objectClass = person
 void IAdmin.setGroupOwner(ome.model.meta.ExperimenterGroup group, ome.model.meta.Experimenter owner)
          adds the user to the owner list for this group.
 void IAdmin.setGroupOwner(ome.model.meta.ExperimenterGroup group, ome.model.meta.Experimenter owner)
          adds the user to the owner list for this group.
 void IRenderingSettings.setOriginalSettingsForPixels(long pixelsId)
          Resets an Pixels' default rendering settings back to channel global minimum and maximum.
 Set<Long> IRenderingSettings.setOriginalSettingsInDataset(long datasetId)
          Resets a dataset's rendering settings back to channel global minimum and maximum.
 void IRenderingSettings.setOriginalSettingsInImage(long imageId)
          Resets an image's default rendering settings back to channel global minimum and maximum.
<T extends ome.model.IObject>
Set<Long>
IRenderingSettings.setOriginalSettingsInSet(Class<T> type, Set<Long> nodeIds)
          Resets a rendering settings back to channel global minimum and maximum for the specified containers.
 String JobHandle.setStatusAndMessage(String status, String message)
          Like JobHandle.setStatus(String) but also sets the message.
 long JobHandle.submit(ome.model.jobs.Job job)
          Submits a Job and returns its database id.
 void IContainer.unlink(ome.model.ILink[] dataOjectLinks, ome.parameters.Parameters options)
          Removes links between OmeroDataObjects e.g Project-Dataset, Dataset-Image Note that the objects themselves aren't deleted, only the Link objects.
 void IAdmin.unsetGroupOwner(ome.model.meta.ExperimenterGroup group, ome.model.meta.Experimenter owner)
          removes the user from the owner list for this group.
 void IAdmin.unsetGroupOwner(ome.model.meta.ExperimenterGroup group, ome.model.meta.Experimenter owner)
          removes the user from the owner list for this group.
<T extends ome.model.IObject>
T
IContainer.updateDataObject(T dataObject, ome.parameters.Parameters options)
          Updates a data object.
 ome.model.IObject[] IContainer.updateDataObjects(ome.model.IObject[] dataObjects, ome.parameters.Parameters options)
          convenience method to save network calls.
<T extends ome.model.IEnum>
T
ITypes.updateEnumeration(T oEnum)
          updates enumeration value specified by object
<T extends ome.model.IEnum>
void
ITypes.updateEnumerations(List<T> listEnum)
          updates enumeration value specified by object
 void IAdmin.updateExperimenter(ome.model.meta.Experimenter experimenter)
          Updates an experimenter if admin or owner of group.
 void IAdmin.updateExperimenterWithPassword(ome.model.meta.Experimenter experimenter, String password)
          Updates an experimenter if admin or owner of group.
 void IAdmin.updateGroup(ome.model.meta.ExperimenterGroup group)
          Updates an experimenter group if admin or owner of group.
 void IAdmin.updateSelf(ome.model.meta.Experimenter experimenter)
          Allows a user to update his/her own information.
 

Uses of NotNull in ome.logic
 

Method parameters in ome.logic with annotations of type NotNull
 Long MetadataImpl.countAnnotationsUsedNotOwned(Class annotationType, long userID)
          Implemented as specified by the IMetadata I/F
 Long MetadataImpl.countSpecifiedAnnotations(Class type, Set<String> include, Set<String> exclude, ome.parameters.Parameters options)
          Implemented as specified by the IMetadata I/F
 ome.model.display.RenderingDef RenderingSettingsImpl.createNewRenderingDef(ome.model.core.Pixels pixels)
          Implemented as specified by the IRenderingSettings I/F
 ome.model.meta.ExperimenterGroup AdminImpl.getDefaultGroup(long experimenterId)
           
 Map MetadataImpl.getTaggedObjectsCount(Set<Long> tagIds, ome.parameters.Parameters options)
          Implemented as specified by the IMetadata I/F
<A extends ome.model.annotations.Annotation>
Set<A>
MetadataImpl.loadAnnotation(Set<Long> annotationIds)
          Implemented as specified by the IMetadata I/F
 Set<ome.model.IObject> MetadataImpl.loadAnnotationsUsedNotOwned(Class annotationType, long userID)
          Implemented as specified by the IMetadata I/F
 Set MetadataImpl.loadChannelAcquisitionData(Set<Long> ids)
          Implemented as specified by the IMetadata I/F
<A extends ome.model.annotations.Annotation>
Set<A>
MetadataImpl.loadSpecifiedAnnotations(Class type, Set<String> include, Set<String> exclude, ome.parameters.Parameters options)
          Implemented as specified by the IMetadata I/F
 Map<Long,Set<ome.model.IObject>> MetadataImpl.loadTagContent(Set<Long> tagIds, ome.parameters.Parameters options)
          Implemented as specified by the IMetadata I/F
 void LdapImpl.setDN(Long experimenterID, String dn)
           
 void AdminImpl.updateExperimenter(ome.model.meta.Experimenter experimenter)
           
 void AdminImpl.updateExperimenterWithPassword(ome.model.meta.Experimenter experimenter, String password)
           
 void AdminImpl.updateGroup(ome.model.meta.ExperimenterGroup group)
           
 void AdminImpl.updateSelf(ome.model.meta.Experimenter e)
           
 

Uses of NotNull in ome.services.sessions
 

Method parameters in ome.services.sessions with annotations of type NotNull
 int SessionBean.closeSession(ome.model.meta.Session session)
           
 ome.model.meta.Session SessionBean.createSession(Principal principal, String credentials)
           
 ome.model.meta.Session SessionBean.createSessionWithTimeout(Principal principal, long milliseconds)
           
 ome.model.meta.Session SessionBean.createSessionWithTimeouts(Principal principal, long timeToLiveMilliseconds, long timeToIdleMilliseconds)
           
 int SessionBean.getReferenceCount(String sessionUuid)
           
 ome.model.meta.Session SessionBean.getSession(String sessionUuid)
           
 ome.model.meta.Session SessionBean.updateSession(ome.model.meta.Session session)
           
 

Uses of NotNull in ome.services.sharing
 

Method parameters in ome.services.sharing with annotations of type NotNull
 ome.model.annotations.CommentAnnotation ShareBean.addComment(long shareId, String commentText)
           
<T extends ome.model.IObject>
void
ShareBean.addObject(long shareId, T object)
           
<T extends ome.model.IObject>
void
ShareBean.addObjects(long shareId, T... objects)
           
 ome.model.annotations.CommentAnnotation ShareBean.addReply(long shareId, String comment, ome.model.annotations.CommentAnnotation replyTo)
           
 ome.model.annotations.CommentAnnotation ShareBean.addReply(long shareId, String comment, ome.model.annotations.CommentAnnotation replyTo)
           
<T extends ome.model.IObject>
long
ShareBean.createShare(String description, Timestamp expiration, List<T> items, List<ome.model.meta.Experimenter> exps, List<String> guests, boolean enabled)
           
 void ShareBean.deleteComment(ome.model.annotations.Annotation comment)
           
 Set<ome.model.meta.Session> ShareBean.getMemberSharesFor(ome.model.meta.Experimenter user, boolean active)
           
 Set<ome.model.meta.Session> ShareBean.getSharesOwnedBy(ome.model.meta.Experimenter user, boolean active)
           
<T extends ome.model.IObject>
void
ShareBean.removeObject(long shareId, T object)
           
<T extends ome.model.IObject>
void
ShareBean.removeObjects(long shareId, T... objects)
           
 



OmeroJava Api

Version: 4.3.3-00d1137e-b2894

Copyright © 2009 The University of Dundee. All Rights Reserved.