Uses of Class
ome.io.nio.DimensionsOutOfBoundsException

Packages that use DimensionsOutOfBoundsException
ome.io.bioformats   
ome.io.nio New Input/Output handling for the OMERO server This includes interfaces/classes for the input and output handling of data within the OMERO server. 
 

Uses of DimensionsOutOfBoundsException in ome.io.bioformats
 

Methods in ome.io.bioformats that throw DimensionsOutOfBoundsException
 void BfPixelBuffer.checkBounds(Integer x, Integer y, Integer z, Integer c, Integer t)
           
 void BfPixelsWrapper.checkBounds(Integer x, Integer y, Integer z, Integer c, Integer t)
           
 void BfPyramidPixelBuffer.checkBounds(Integer x, Integer y, Integer z, Integer c, Integer t)
           
 ome.util.PixelData BfPixelBuffer.getCol(Integer x, Integer z, Integer c, Integer t)
           
 ome.util.PixelData BfPyramidPixelBuffer.getCol(Integer x, Integer z, Integer c, Integer t)
           
 byte[] BfPixelsWrapper.getCol(Integer x, Integer z, Integer c, Integer t, byte[] buffer)
           
 byte[] BfPixelBuffer.getColDirect(Integer x, Integer z, Integer c, Integer t, byte[] buffer)
           
 byte[] BfPyramidPixelBuffer.getColDirect(Integer x, Integer z, Integer c, Integer t, byte[] buffer)
           
 ome.util.PixelData BfPixelBuffer.getHypercube(List<Integer> offset, List<Integer> size, List<Integer> step)
           
 ome.util.PixelData BfPyramidPixelBuffer.getHypercube(List<Integer> offset, List<Integer> size, List<Integer> step)
           
 byte[] BfPixelsWrapper.getHypercube(List<Integer> offset, List<Integer> size, List<Integer> step, byte[] buffer)
           
 byte[] BfPixelBuffer.getHypercubeDirect(List<Integer> offset, List<Integer> size, List<Integer> step, byte[] buffer)
           
 byte[] BfPyramidPixelBuffer.getHypercubeDirect(List<Integer> offset, List<Integer> size, List<Integer> step, byte[] buffer)
           
 Integer BfPixelBuffer.getHypercubeSize(List<Integer> offset, List<Integer> size, List<Integer> step)
           
 Integer BfPixelsWrapper.getHypercubeSize(List<Integer> offset, List<Integer> size, List<Integer> step)
           
 Integer BfPyramidPixelBuffer.getHypercubeSize(List<Integer> offset, List<Integer> size, List<Integer> step)
           
 ome.util.PixelData BfPixelBuffer.getPlane(Integer z, Integer c, Integer t)
           
 ome.util.PixelData BfPyramidPixelBuffer.getPlane(Integer z, Integer c, Integer t)
           
 byte[] BfPixelsWrapper.getPlane(Integer z, Integer c, Integer t, byte[] buffer)
           
 byte[] BfPixelBuffer.getPlaneDirect(Integer z, Integer c, Integer t, byte[] buffer)
           
 byte[] BfPyramidPixelBuffer.getPlaneDirect(Integer z, Integer c, Integer t, byte[] buffer)
           
 Long BfPixelBuffer.getPlaneOffset(Integer z, Integer c, Integer t)
           
 Long BfPixelsWrapper.getPlaneOffset(Integer z, Integer c, Integer t)
           
 Long BfPyramidPixelBuffer.getPlaneOffset(Integer z, Integer c, Integer t)
           
 byte[] BfPixelsWrapper.getPlaneRegion(Integer z, Integer c, Integer t, Integer count, Integer offset, byte[] buffer)
           
 ome.util.PixelData BfPixelBuffer.getPlaneRegion(Integer x, Integer y, Integer width, Integer height, Integer z, Integer c, Integer t, Integer stride)
           
 ome.util.PixelData BfPyramidPixelBuffer.getPlaneRegion(Integer x, Integer y, Integer width, Integer height, Integer z, Integer c, Integer t, Integer stride)
           
 byte[] BfPixelBuffer.getPlaneRegionDirect(Integer z, Integer c, Integer t, Integer count, Integer offset, byte[] buffer)
           
 byte[] BfPyramidPixelBuffer.getPlaneRegionDirect(Integer z, Integer c, Integer t, Integer count, Integer offset, byte[] buffer)
           
 ome.util.PixelData BfPixelBuffer.getRow(Integer y, Integer z, Integer c, Integer t)
           
 ome.util.PixelData BfPyramidPixelBuffer.getRow(Integer y, Integer z, Integer c, Integer t)
           
 byte[] BfPixelsWrapper.getRow(Integer y, Integer z, Integer c, Integer t, byte[] buffer)
           
 byte[] BfPixelBuffer.getRowDirect(Integer y, Integer z, Integer c, Integer t, byte[] buffer)
           
 byte[] BfPyramidPixelBuffer.getRowDirect(Integer y, Integer z, Integer c, Integer t, byte[] buffer)
           
 Long BfPixelBuffer.getRowOffset(Integer y, Integer z, Integer c, Integer t)
           
 Long BfPixelsWrapper.getRowOffset(Integer y, Integer z, Integer c, Integer t)
           
 Long BfPyramidPixelBuffer.getRowOffset(Integer y, Integer z, Integer c, Integer t)
           
 ome.util.PixelData BfPixelBuffer.getStack(Integer c, Integer t)
           
 ome.util.PixelData BfPyramidPixelBuffer.getStack(Integer c, Integer t)
           
 byte[] BfPixelsWrapper.getStack(Integer c, Integer t, byte[] buffer)
           
 byte[] BfPixelBuffer.getStackDirect(Integer c, Integer t, byte[] buffer)
           
 byte[] BfPyramidPixelBuffer.getStackDirect(Integer c, Integer t, byte[] buffer)
           
 Long BfPixelBuffer.getStackOffset(Integer c, Integer t)
           
 Long BfPixelsWrapper.getStackOffset(Integer c, Integer t)
           
 Long BfPyramidPixelBuffer.getStackOffset(Integer c, Integer t)
           
 ome.util.PixelData BfPixelBuffer.getTimepoint(Integer t)
           
 ome.util.PixelData BfPyramidPixelBuffer.getTimepoint(Integer t)
           
 byte[] BfPixelsWrapper.getTimepoint(Integer t, byte[] buffer)
           
 byte[] BfPixelBuffer.getTimepointDirect(Integer t, byte[] buffer)
           
 byte[] BfPyramidPixelBuffer.getTimepointDirect(Integer t, byte[] buffer)
           
 Long BfPixelBuffer.getTimepointOffset(Integer t)
           
 Long BfPixelsWrapper.getTimepointOffset(Integer t)
           
 Long BfPyramidPixelBuffer.getTimepointOffset(Integer t)
           
 void BfPixelBuffer.setPlane(byte[] buffer, Integer z, Integer c, Integer t)
           
 void BfPyramidPixelBuffer.setPlane(byte[] buffer, Integer z, Integer c, Integer t)
           
 void BfPixelBuffer.setPlane(ByteBuffer buffer, Integer z, Integer c, Integer t)
           
 void BfPyramidPixelBuffer.setPlane(ByteBuffer buffer, Integer z, Integer c, Integer t)
           
 void BfPixelBuffer.setRow(ByteBuffer buffer, Integer y, Integer z, Integer c, Integer t)
           
 void BfPyramidPixelBuffer.setRow(ByteBuffer buffer, Integer y, Integer z, Integer c, Integer t)
           
 void BfPixelBuffer.setStack(byte[] buffer, Integer z, Integer c, Integer t)
           
 void BfPyramidPixelBuffer.setStack(byte[] buffer, Integer z, Integer c, Integer t)
           
 void BfPixelBuffer.setStack(ByteBuffer buffer, Integer z, Integer c, Integer t)
           
 void BfPyramidPixelBuffer.setStack(ByteBuffer buffer, Integer z, Integer c, Integer t)
           
 void BfPixelBuffer.setTimepoint(byte[] buffer, Integer t)
           
 void BfPyramidPixelBuffer.setTimepoint(byte[] buffer, Integer t)
           
 void BfPixelBuffer.setTimepoint(ByteBuffer buffer, Integer t)
           
 void BfPyramidPixelBuffer.setTimepoint(ByteBuffer buffer, Integer t)
           
 

Uses of DimensionsOutOfBoundsException in ome.io.nio
 

Methods in ome.io.nio that throw DimensionsOutOfBoundsException
 void InMemoryPlanarPixelBuffer.checkBounds(Integer x, Integer y, Integer z, Integer c, Integer t)
           
 void PixelBuffer.checkBounds(Integer x, Integer y, Integer z, Integer c, Integer t)
          Checks to ensure that no one particular axis has an offset out of bounds.
 void RomioPixelBuffer.checkBounds(Integer x, Integer y, Integer z, Integer c, Integer t)
          Implemented as specified by PixelBuffer I/F.
 ome.util.PixelData InMemoryPlanarPixelBuffer.getCol(Integer x, Integer z, Integer c, Integer t)
           
 ome.util.PixelData PixelBuffer.getCol(Integer x, Integer z, Integer c, Integer t)
          Retrieves a particular column from this pixel buffer.
 ome.util.PixelData RomioPixelBuffer.getCol(Integer x, Integer z, Integer c, Integer t)
          Implemented as specified by PixelBuffer I/F.
 byte[] InMemoryPlanarPixelBuffer.getColDirect(Integer x, Integer z, Integer c, Integer t, byte[] buffer)
           
 byte[] PixelBuffer.getColDirect(Integer x, Integer z, Integer c, Integer t, byte[] buffer)
          Retrieves a particular column from this pixel buffer.
 byte[] RomioPixelBuffer.getColDirect(Integer x, Integer z, Integer c, Integer t, byte[] buffer)
          Implemented as specified by PixelBuffer I/F.
 ome.util.PixelData InMemoryPlanarPixelBuffer.getHypercube(List<Integer> offset, List<Integer> size, List<Integer> step)
           
 ome.util.PixelData PixelBuffer.getHypercube(List<Integer> offset, List<Integer> size, List<Integer> step)
          Retrieves a hypercube from this pixel buffer.
 ome.util.PixelData RomioPixelBuffer.getHypercube(List<Integer> offset, List<Integer> size, List<Integer> step)
          Implemented as specified by PixelBuffer I/F.
 byte[] InMemoryPlanarPixelBuffer.getHypercubeDirect(List<Integer> offset, List<Integer> size, List<Integer> step, byte[] buffer)
           
 byte[] PixelBuffer.getHypercubeDirect(List<Integer> offset, List<Integer> size, List<Integer> step, byte[] buffer)
          Retrieves a hypercube from the given pixels directly.
 byte[] RomioPixelBuffer.getHypercubeDirect(List<Integer> offset, List<Integer> size, List<Integer> step, byte[] buffer)
          Implemented as specified by PixelBuffer I/F.
 Integer InMemoryPlanarPixelBuffer.getHypercubeSize(List<Integer> offset, List<Integer> size, List<Integer> step)
           
 Integer PixelBuffer.getHypercubeSize(List<Integer> offset, List<Integer> size, List<Integer> step)
          Retrieves a the size of a hypercube from this pixel buffer.
 Integer RomioPixelBuffer.getHypercubeSize(List<Integer> offset, List<Integer> size, List<Integer> step)
           
 ome.util.PixelData InMemoryPlanarPixelBuffer.getPlane(Integer z, Integer c, Integer t)
           
 ome.util.PixelData PixelBuffer.getPlane(Integer z, Integer c, Integer t)
          Retrieves a particular 2D image plane from this pixel buffer.
 ome.util.PixelData RomioPixelBuffer.getPlane(Integer z, Integer c, Integer t)
          Implemented as specified by PixelBuffer I/F.
 byte[] InMemoryPlanarPixelBuffer.getPlaneDirect(Integer z, Integer c, Integer t, byte[] buffer)
           
 byte[] PixelBuffer.getPlaneDirect(Integer z, Integer c, Integer t, byte[] buffer)
          Retrieves a particular 2D image plane from this pixel buffer.
 byte[] RomioPixelBuffer.getPlaneDirect(Integer z, Integer c, Integer t, byte[] buffer)
          Implemented as specified by PixelBuffer I/F.
 Long InMemoryPlanarPixelBuffer.getPlaneOffset(Integer z, Integer c, Integer t)
           
 Long PixelBuffer.getPlaneOffset(Integer z, Integer c, Integer t)
          Retrieves the offset for a particular 2D image plane in this pixel buffer.
 Long RomioPixelBuffer.getPlaneOffset(Integer z, Integer c, Integer t)
          Implemented as specified by PixelBuffer I/F.
 ome.util.PixelData InMemoryPlanarPixelBuffer.getPlaneRegion(Integer x, Integer y, Integer width, Integer height, Integer z, Integer c, Integer t, Integer stride)
           
 ome.util.PixelData PixelBuffer.getPlaneRegion(Integer x, Integer y, Integer width, Integer height, Integer z, Integer c, Integer t, Integer stride)
          Retrieves a particular region of a 2D image plane from this pixel buffer.
 ome.util.PixelData RomioPixelBuffer.getPlaneRegion(Integer x, Integer y, Integer width, Integer height, Integer z, Integer c, Integer t, Integer stride)
          Implemented as specified by PixelBuffer I/F.
 byte[] InMemoryPlanarPixelBuffer.getPlaneRegionDirect(Integer z, Integer c, Integer t, Integer count, Integer offset, byte[] buffer)
           
 byte[] PixelBuffer.getPlaneRegionDirect(Integer z, Integer c, Integer t, Integer count, Integer offset, byte[] buffer)
          Retrieves a region from a given plane directly.
 byte[] RomioPixelBuffer.getPlaneRegionDirect(Integer z, Integer c, Integer t, Integer count, Integer offset, byte[] buffer)
          Implemented as specified by PixelBuffer I/F.
 ome.util.PixelData InMemoryPlanarPixelBuffer.getRow(Integer y, Integer z, Integer c, Integer t)
           
 ome.util.PixelData PixelBuffer.getRow(Integer y, Integer z, Integer c, Integer t)
          Retrieves a particular row or scanline from this pixel buffer.
 ome.util.PixelData RomioPixelBuffer.getRow(Integer y, Integer z, Integer c, Integer t)
          Implemented as specified by PixelBuffer I/F.
 byte[] InMemoryPlanarPixelBuffer.getRowDirect(Integer y, Integer z, Integer c, Integer t, byte[] buffer)
           
 byte[] PixelBuffer.getRowDirect(Integer y, Integer z, Integer c, Integer t, byte[] buffer)
          Retrieves a particular row or scanline from this pixel buffer.
 byte[] RomioPixelBuffer.getRowDirect(Integer y, Integer z, Integer c, Integer t, byte[] buffer)
          Implemented as specified by PixelBuffer I/F.
 Long InMemoryPlanarPixelBuffer.getRowOffset(Integer y, Integer z, Integer c, Integer t)
           
 Long PixelBuffer.getRowOffset(Integer y, Integer z, Integer c, Integer t)
          Retrieves the offset for a particular row or scanline in this pixel buffer.
 Long RomioPixelBuffer.getRowOffset(Integer y, Integer z, Integer c, Integer t)
          Implemented as specified by PixelBuffer I/F.
 ome.util.PixelData InMemoryPlanarPixelBuffer.getStack(Integer c, Integer t)
           
 ome.util.PixelData PixelBuffer.getStack(Integer c, Integer t)
          Retrieves the the entire number of optical sections for a single wavelength or channel at a particular timepoint in this pixel buffer.
 ome.util.PixelData RomioPixelBuffer.getStack(Integer c, Integer t)
          Implemented as specified by PixelBuffer I/F.
 byte[] InMemoryPlanarPixelBuffer.getStackDirect(Integer c, Integer t, byte[] buffer)
           
 byte[] PixelBuffer.getStackDirect(Integer c, Integer t, byte[] buffer)
          Retrieves the the entire number of optical sections for a single wavelength or channel at a particular timepoint in this pixel buffer.
 byte[] RomioPixelBuffer.getStackDirect(Integer c, Integer t, byte[] buffer)
          Implemented as specified by PixelBuffer I/F.
 Long InMemoryPlanarPixelBuffer.getStackOffset(Integer c, Integer t)
           
 Long PixelBuffer.getStackOffset(Integer c, Integer t)
          Retrieves the offset for the entire number of optical sections for a single wavelength or channel at a particular timepoint in this pixel buffer.
 Long RomioPixelBuffer.getStackOffset(Integer c, Integer t)
          Implemented as specified by PixelBuffer I/F.
 ome.util.PixelData InMemoryPlanarPixelBuffer.getTimepoint(Integer t)
           
 ome.util.PixelData PixelBuffer.getTimepoint(Integer t)
          Retrieves the entire number of optical sections for all wavelengths or channels at a particular timepoint in this pixel buffer.
 ome.util.PixelData RomioPixelBuffer.getTimepoint(Integer t)
          Implemented as specified by PixelBuffer I/F.
 byte[] InMemoryPlanarPixelBuffer.getTimepointDirect(Integer t, byte[] buffer)
           
 byte[] PixelBuffer.getTimepointDirect(Integer t, byte[] buffer)
          Retrieves the entire number of optical sections for all wavelengths or channels at a particular timepoint in this pixel buffer.
 byte[] RomioPixelBuffer.getTimepointDirect(Integer t, byte[] buffer)
          Implemented as specified by PixelBuffer I/F.
 Long InMemoryPlanarPixelBuffer.getTimepointOffset(Integer t)
           
 Long PixelBuffer.getTimepointOffset(Integer t)
          Retrieves the in memory size of the entire number of optical sections for all wavelengths or channels at a particular timepoint in this pixel buffer.
 Long RomioPixelBuffer.getTimepointOffset(Integer t)
          Implemented as specified by PixelBuffer I/F.
 void InMemoryPlanarPixelBuffer.setPlane(byte[] buffer, Integer z, Integer c, Integer t)
           
 void PixelBuffer.setPlane(byte[] buffer, Integer z, Integer c, Integer t)
          Sets a particular 2D image plane in this pixel buffer.
 void RomioPixelBuffer.setPlane(byte[] buffer, Integer z, Integer c, Integer t)
          Implemented as specified by PixelBuffer I/F.
 void InMemoryPlanarPixelBuffer.setPlane(ByteBuffer buffer, Integer z, Integer c, Integer t)
           
 void PixelBuffer.setPlane(ByteBuffer buffer, Integer z, Integer c, Integer t)
          Sets a particular 2D image plane in this pixel buffer.
 void RomioPixelBuffer.setPlane(ByteBuffer buffer, Integer z, Integer c, Integer t)
          Implemented as specified by PixelBuffer I/F.
 void InMemoryPlanarPixelBuffer.setRow(ByteBuffer buffer, Integer y, Integer z, Integer c, Integer t)
           
 void PixelBuffer.setRow(ByteBuffer buffer, Integer y, Integer z, Integer c, Integer t)
          Sets a particular row or scanline in this pixel buffer.
 void RomioPixelBuffer.setRow(ByteBuffer buffer, Integer y, Integer z, Integer c, Integer t)
          Implemented as specified by PixelBuffer I/F.
 void InMemoryPlanarPixelBuffer.setStack(byte[] buffer, Integer z, Integer c, Integer t)
           
 void PixelBuffer.setStack(byte[] buffer, Integer z, Integer c, Integer t)
          Sets the entire number of optical sections for a single wavelength or channel at a particular timepoint in this pixel buffer.
 void RomioPixelBuffer.setStack(byte[] buffer, Integer z, Integer c, Integer t)
          Implemented as specified by PixelBuffer I/F.
 void InMemoryPlanarPixelBuffer.setStack(ByteBuffer buffer, Integer z, Integer c, Integer t)
           
 void PixelBuffer.setStack(ByteBuffer buffer, Integer z, Integer c, Integer t)
          Sets the entire number of optical sections for a single wavelength or channel at a particular timepoint in this pixel buffer.
 void RomioPixelBuffer.setStack(ByteBuffer buffer, Integer z, Integer c, Integer t)
          Implemented as specified by PixelBuffer I/F.
 void InMemoryPlanarPixelBuffer.setTimepoint(byte[] buffer, Integer t)
           
 void PixelBuffer.setTimepoint(byte[] buffer, Integer t)
          Sets the entire number of optical sections for all wavelengths or channels at a particular timepoint in this pixel buffer.
 void RomioPixelBuffer.setTimepoint(byte[] buffer, Integer t)
          Implemented as specified by PixelBuffer I/F.
 void InMemoryPlanarPixelBuffer.setTimepoint(ByteBuffer buffer, Integer t)
           
 void PixelBuffer.setTimepoint(ByteBuffer buffer, Integer t)
          Sets the entire number of optical sections for all wavelengths or channels at a particular timepoint in this pixel buffer.
 void RomioPixelBuffer.setTimepoint(ByteBuffer buffer, Integer t)
          Implemented as specified by PixelBuffer I/F.
 



OmeroJava Api

Version: 4.3.3-00d1137e-b2894

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