Module populate_metadata
source code
Populate bulk metadata tables from delimited text files.
|
Skip
Instance to denote a row skip request.
|
|
MetadataError
Raised by the metadata parsing context when an error condition is
reached.
|
|
HeaderResolver
Header resolver for known header names which is responsible for
creating the column set for the OMERO.tables instance.
|
|
ValueResolver
Value resolver for column types which is responsible for filling up
non-metadata columns with their OMERO data model identifiers.
|
|
ParsingContext
Generic parsing context for CSV files.
|
|
log = logging.getLogger("omero.util.populate_metadata")
|
|
thread_pool = None
hash(x)
|
|
PLATE_NAME_COLUMN = 'Plate Name'
|
|
WELL_NAME_COLUMN = 'Well Name'
|
Imports:
exceptions,
tempfile,
logging,
time,
sys,
csv,
re,
Thread,
StringIO,
getpass,
getopt,
GetoptError,
Queue,
omero,
rdouble,
rstring,
rint,
DatasetAnnotationLink,
DatasetI,
FileAnnotationI,
OriginalFileI,
PlateI,
PlateAnnotationLinkI,
ScreenI,
ScreenAnnotationLinkI,
ImageColumn,
LongColumn,
PlateColumn,
StringColumn,
WellColumn,
create_path,
remove_path,
client,
ThreadPool,
XML,
Element,
SubElement,
ElementTree,
dump,
iterparse
Prints usage so that we don't have to. :)
|