MIAS measurements are a set of tab delimited text files per well. Each
TSV file's content is prefixed by the analysis parameters.
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__init__(self,
analysis_ctx,
service_factory,
original_file_provider,
original_file,
result_files)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature |
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get_empty_columns(self,
n_columns)
Retrieves a set of empty OmeroTables columns for the analysis results
prefixed by an ImageColumn and RoiColumn to handle these linked
object indexes. |
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image_from_original_file(self,
original_file)
Overriding the abstract implementation since the companion files are
no longer attached to the images, but only to the plate for MIAS. |
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get_name(self,
set_of_columns=None)
Returns the name of the measurement, and a set of columns. |
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parse(self)
Parses result files, returning a MeasurementParsingResult. |
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_parse_neo_roi(self,
columns)
Parses out ROI from OmeroTables columns for 'NEO' datasets. |
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_parse_mnu_roi(self,
columns)
Parses out ROI from OmeroTables columns for 'MNU' datasets. |
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Inherited from AbstractMeasurementCtx :
create_file_annotation ,
get_well_images ,
parse_and_populate ,
update_rois ,
update_table
Inherited from object :
__delattr__ ,
__format__ ,
__getattribute__ ,
__hash__ ,
__new__ ,
__reduce__ ,
__reduce_ex__ ,
__repr__ ,
__setattr__ ,
__sizeof__ ,
__str__ ,
__subclasshook__
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