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A. Core System | |
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ome.api | Contains the central verbs of the Omero System. |
ome.system | Provides the necessary container structure for the entire Omero system. |
C. Client Packages | |
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pojos | |
pojos.util |
D. Server Packages | |
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ome.annotations | Runtime source annotation package for the OMERO server This includes classes that annotate source code and check metadata at runtime for server API calls. |
ome.api.local | Non-client service API for OMERO This includes interfaces for the local administration of the OMERO server. |
ome.io.nio | New Input/Output handling for the OMERO server This includes interfaces/classes for the input and output handling of data within the OMERO server. |
ome.logic | The central repository of implementations which will be accessible through this server. |
ome.security | JBoss and OMERO security handling This includes classes that provide security for the execution and usage of the OMERO server on a JBoss platform. |
ome.security.auth | |
ome.security.basic | Basic OMERO security contextual classes Basic classes that provide security context objects necessary to secure the implementation of the OMERO server on a JBoss platform. |
ome.security.sharing | |
ome.services | Base services package for OMERO API services This includes classes that implement OMERO API services described as interfaces in the OMERO Common component. |
ome.services.db | |
ome.services.delete | Implementations of the ome.api.IDelete service. |
ome.services.formats | |
ome.services.fulltext | All necessary classes for background indexing of metadata and attached binary files. |
ome.services.fulltext.bridges | Custom FieldBridge implementations which can be configured to be run on each indexing activity. |
ome.services.licenses | Contains an add-on service and interceptor for license administration. |
ome.services.messages | Message implementations used throughout the server for internal communication. |
ome.services.messages.stats | |
ome.services.procs | Internal process and process management This includes interfaces and classes that provide thread process management for internal processes critical to the operation of the OMERO server. |
ome.services.procs.scripts | Script processor infrastructure. |
ome.services.projection | |
ome.services.query | facilitates the creation of Hibernate Queries and Criteria. |
ome.services.roi | |
ome.services.scheduler | |
ome.services.scripts | |
ome.services.search | Internal search implementation classes. |
ome.services.sessions | |
ome.services.sessions.events | |
ome.services.sessions.state | |
ome.services.sessions.stats | |
ome.services.sharing | ome.api.IShare support infrastructure. |
ome.services.sharing.data | |
ome.services.throttling | |
ome.services.util | Helper classes to support OMERO service beans Instead of abstract classes, IOC methods and dependency injection is used to provide service interception for the Service (binary) bean classes. |
ome.services.util.cache | OMERO utilities for caching. |
ome.tools | OMERO Server Utility and Spring/Hibernate Tools Classes/Interfaces that implement File, Hibernate, Spring, Annotation, Hierarchy, etc. method mechanics for the OMERO server Related Documentation For more information, please see: TODO |
ome.tools.hibernate | Hibernate specific tools for the OMERO Server Classes/Interfaces that implement Hibernate method mechanics for the OMERO server Related Documentation For more information, please see: TODO |
ome.tools.lsid | Life Science Identifier (LSID) tools Classes/Interfaces that manage conversions and creation of LSID unique identifiers Related Documentation For more information, please see: TODO |
ome.tools.spring | OMERO Server tools specific to Spring Classes/Interfaces that implement AOP, Post-processing injection, session flushing, and factory management. |
E. Blitz Client | |
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omero | |
omero.grid | |
omero.model | |
omero.sys | |
omero.util | |
omerojava.util |
G. Rendering Engine | |
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omeis.providers.re | Red-Green-Blue (RGB) data structures and Image Rendering Service This package provides basic data structures to represent an RGB pixel set and provide a service for the rendering of this pixel set. |
omeis.providers.re.codomain | Provides codomain pixel set data structures for Maps and Contexts. |
omeis.providers.re.data | Provides classes needed to define XY planes within a dynamic 3D context. |
omeis.providers.re.metadata | |
omeis.providers.re.quantum |
H. Utilities | |
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ome.util.math.geom2D | Plane geometry data structures for OMERO This includes a several implementations of various two dimensional simple geometry classes to represent these structures within the OMERO system. |
ome.util.mem | Dynamic object instance and state management for OMERO This includes various implementations of copy and clonable operations. |
ome.util.messages | Messages package for specialized exception handling for OMERO. |
Other Packages | |
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ome.formats | |
ome.formats.importer.util |
OMERO API Reference Documentation.
OMERO API Reference Documentation. For complete documentation, see openmicroscopy.org
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Version: Beta-4.2.0-r7571-b29
Copyright © 2009 The University of Dundee. All Rights Reserved.