Package omero :: Package util :: Module populate_roi
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Module populate_roi

source code

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Classes [hide private]
  MeasurementError
Raised by the analysis or measurement context when an error condition is reached.
  DownloadingOriginalFileProvider
Provides original file data by downloading it from an OMERO raw file store.
  AbstractPlateAnalysisCtx
Abstract class which aggregates and represents all measurement runs made on a given Plate.
  MIASPlateAnalysisCtx
MIAS dataset concrete class implementation of an analysis context.
  FlexPlateAnalysisCtx
Flex dataset concrete class implementation of an analysis context.
  InCellPlateAnalysisCtx
InCell dataset concrete class implementation of an analysis context.
  PlateAnalysisCtxFactory
The plate analysis context factory is responsible for detecting and returning a plate analysis context instance for a given plate.
  MeasurementParsingResult
Holds the results of a measurement parsing event.
  AbstractMeasurementCtx
Abstract class which aggregates and represents all the results produced from a given measurement run.
  MIASMeasurementCtx
MIAS measurements are a set of tab delimited text files per well.
  FlexMeasurementCtx
Flex measurements are located deep within a ".res" XML file container and contain no ROI.
  InCellMeasurementCtx
InCell Analyzer measurements are located deep within an XML file container.
Functions [hide private]
 
usage(error)
Prints usage so that we don't have to.
source code
Variables [hide private]
  log = logging.getLogger("omero.util.populate_roi")

Imports: exceptions, tempfile, logging, time, sys, csv, re, StringIO, getpass, getopt, GetoptError, omero, rdouble, rstring, rint, OriginalFileI, PlateI, PlateAnnotationLinkI, ImageI, FileAnnotationI, RoiI, EllipseI, PointI, ImageColumn, WellColumn, RoiColumn, LongColumn, DoubleColumn, create_path, remove_path, client, XML, Element, SubElement, ElementTree, dump, iterparse


Function Details [hide private]

usage(error)

source code 

Prints usage so that we don't have to. :)