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PREV NEXT | FRAMES NO FRAMES |
Packages that use RolesAllowed | |
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ome.logic | The central repository of implementations which will be accessible through this server. |
ome.services | Base services package for OMERO API services This includes classes that implement OMERO API services described as interfaces in the OMERO Common component. |
ome.services.delete | Implementations of the ome.api.IDelete service. |
ome.services.licenses | Contains an add-on service and interceptor for license administration. |
ome.services.projection | |
ome.services.sessions | |
ome.services.sharing | ome.api.IShare support infrastructure. |
Uses of RolesAllowed in ome.logic |
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Methods in ome.logic with annotations of type RolesAllowed | ||
---|---|---|
void |
AdminImpl.addGroupOwners(ome.model.meta.ExperimenterGroup group,
ome.model.meta.Experimenter... owner)
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|
void |
AdminImpl.addGroups(ome.model.meta.Experimenter user,
ome.model.meta.ExperimenterGroup... groups)
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|
Long |
QueryImpl.aggByQuery(String agg,
String field,
String query,
ome.parameters.Parameters params)
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|
Map<String,Long> |
QueryImpl.aggMapByQuery(String agg,
String mapKey,
String field,
String query,
ome.parameters.Parameters params)
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TypesImpl.allEnumerations(Class<T> k)
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Map<Boolean,List<Long>> |
RenderingSettingsImpl.applySettingsToDataset(long from,
long to)
Implemented as specified by the IRenderingSettings I/F. |
|
boolean |
RenderingSettingsImpl.applySettingsToImage(long from,
long to)
Implemented as specified by the IRenderingSettings I/F |
|
Map<Boolean,List<Long>> |
RenderingSettingsImpl.applySettingsToImages(long from,
List<Long> nodeIds)
Implemented as specified by the IRenderingSettings I/F |
|
boolean |
RenderingSettingsImpl.applySettingsToPixels(long from,
long to)
Implemented as specified by the IRenderingSettings I/F |
|
Map<Boolean,List<Long>> |
RenderingSettingsImpl.applySettingsToProject(long from,
long to)
Implemented as specified by the IRenderingSettings I/F. |
|
|
RenderingSettingsImpl.applySettingsToSet(long from,
Class<T> klass,
Set<Long> nodeIds)
Implemented as specified by the IRenderingSettings I/F. |
|
boolean |
AdminImpl.canUpdate(ome.model.IObject obj)
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|
void |
AdminImpl.changeGroup(ome.model.IObject iObject,
String groupName)
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void |
AdminImpl.changeOwner(ome.model.IObject iObject,
String omeName)
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void |
AdminImpl.changePassword(String newPassword)
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void |
AdminImpl.changePermissions(ome.model.IObject iObject,
ome.model.internal.Permissions perms)
the implementation of this method is somewhat tricky in that Permissions changes must be allowed even when other updates are
not. |
|
void |
AdminImpl.changeUserPassword(String user,
String newPassword)
|
|
boolean |
QueryImpl.checkProperty(String type,
String property)
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boolean |
QueryImpl.checkType(String type)
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void |
QueryImpl.clear()
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ome.model.meta.Experimenter[] |
AdminImpl.containedExperimenters(long groupId)
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|
ome.model.meta.ExperimenterGroup[] |
AdminImpl.containedGroups(long experimenterId)
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boolean |
QueryImpl.contains(Object obj)
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Long |
PixelsImpl.copyAndResizeImage(long imageId,
Integer sizeX,
Integer sizeY,
Integer sizeZ,
Integer sizeT,
List<Integer> channelList,
String name,
boolean copyStats)
|
|
Long |
PixelsImpl.copyAndResizePixels(long pixelsId,
Integer sizeX,
Integer sizeY,
Integer sizeZ,
Integer sizeT,
List<Integer> channelList,
String methodology,
boolean copyStats)
|
|
Long |
MetadataImpl.countAnnotationsUsedNotOwned(Class annotationType,
long userID)
Implemented as specified by the IMetadata I/F |
|
Long |
MetadataImpl.countSpecifiedAnnotations(Class type,
Set<String> include,
Set<String> exclude,
ome.parameters.Parameters options)
Implemented as specified by the IMetadata I/F |
|
ome.model.IObject |
PojosImpl.createDataObject(ome.model.IObject arg0,
ome.parameters.Parameters arg1)
Implemented as specified by the IContainer I/F |
|
ome.model.IObject[] |
PojosImpl.createDataObjects(ome.model.IObject[] arg0,
ome.parameters.Parameters arg1)
Implemented as specified by the IContainer I/F |
|
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TypesImpl.createEnumeration(T newEnum)
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long |
AdminImpl.createExperimenter(ome.model.meta.Experimenter experimenter,
ome.model.meta.ExperimenterGroup defaultGroup,
ome.model.meta.ExperimenterGroup... otherGroups)
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long |
AdminImpl.createExperimenterWithPassword(ome.model.meta.Experimenter experimenter,
String password,
ome.model.meta.ExperimenterGroup defaultGroup,
ome.model.meta.ExperimenterGroup... otherGroups)
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long |
AdminImpl.createGroup(ome.model.meta.ExperimenterGroup group)
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Long |
PixelsImpl.createImage(int sizeX,
int sizeY,
int sizeZ,
int sizeT,
List<Integer> channelList,
ome.model.enums.PixelsType pixelsType,
String name,
String description)
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long |
AdminImpl.createSystemUser(ome.model.meta.Experimenter newSystemUser)
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long |
AdminImpl.createUser(ome.model.meta.Experimenter newUser,
String defaultGroup)
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void |
PojosImpl.deleteDataObject(ome.model.IObject row,
ome.parameters.Parameters arg1)
Implemented as specified by the IContainer I/F |
|
void |
PojosImpl.deleteDataObjects(ome.model.IObject[] rows,
ome.parameters.Parameters options)
Implemented as specified by the IContainer I/F |
|
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TypesImpl.deleteEnumeration(T oEnum)
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void |
AdminImpl.deleteExperimenter(ome.model.meta.Experimenter user)
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void |
AdminImpl.deleteGroup(ome.model.meta.ExperimenterGroup group)
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void |
UpdateImpl.deleteObject(ome.model.IObject row)
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void |
QueryImpl.evict(Object obj)
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QueryImpl.execute(org.springframework.orm.hibernate3.HibernateCallback callback)
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QueryImpl.execute(Query<T> query)
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ome.model.IObject |
QueryImpl.find(Class klass,
long id)
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QueryImpl.findAll(Class<T> klass,
ome.parameters.Filter filter)
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QueryImpl.findAllByExample(T example,
ome.parameters.Filter filter)
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QueryImpl.findAllByFullText(Class<T> type,
String query,
ome.parameters.Parameters params)
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QueryImpl.findAllByQuery(String queryName,
ome.parameters.Parameters params)
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QueryImpl.findAllByString(Class<T> klass,
String fieldName,
String value,
boolean caseSensitive,
ome.parameters.Filter filter)
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QueryImpl.findByExample(T example)
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QueryImpl.findByQuery(String queryName,
ome.parameters.Parameters params)
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QueryImpl.findByString(Class<T> klass,
String fieldName,
String value)
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Set |
PojosImpl.findContainerHierarchies(Class rootNodeType,
Set imageIds,
ome.parameters.Parameters options)
Implemented as speficied by the IContainer I/F |
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String |
LdapImpl.findDN(String username)
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ome.model.meta.Experimenter |
LdapImpl.findExperimenter(String username)
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void |
UpdateImpl.flush()
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ome.model.IObject |
QueryImpl.get(Class klass,
long id)
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PixelsImpl.getAllEnumerations(Class<T> klass)
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List<Class<ome.model.IAnnotated>> |
TypesImpl.getAnnotationTypes()
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int |
PixelsImpl.getBitDepth(ome.model.enums.PixelsType pixelsType)
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Map |
PojosImpl.getCollectionCount(String type,
String property,
Set ids,
ome.parameters.Parameters options)
Implemented as specified by the IContainer I/F |
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TypesImpl.getContainerTypes()
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ome.model.meta.ExperimenterGroup |
AdminImpl.getDefaultGroup(long experimenterId)
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TypesImpl.getEnumeration(Class<T> k,
String string)
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PixelsImpl.getEnumeration(Class<T> klass,
String value)
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TypesImpl.getEnumerationsWithEntries()
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TypesImpl.getEnumerationTypes()
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EventContext |
AdminImpl.getEventContext()
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ome.model.meta.Experimenter |
AdminImpl.getExperimenter(long id)
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long |
RepositoryInfoImpl.getFreeSpaceInKilobytes()
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ome.model.meta.ExperimenterGroup |
AdminImpl.getGroup(long id)
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Set |
PojosImpl.getImages(Class rootNodeType,
Set rootNodeIds,
ome.parameters.Parameters options)
Implemented as specified by the IContainer I/F |
|
Set |
PojosImpl.getImagesByOptions(ome.parameters.Parameters options)
Implemented as specified by the IContainer I/F |
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TypesImpl.getImportTypes()
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List<Long> |
AdminImpl.getLeaderOfGroupIds(ome.model.meta.Experimenter e)
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List<Long> |
AdminImpl.getMemberOfGroupIds(ome.model.meta.Experimenter e)
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TypesImpl.getOriginalEnumerations()
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TypesImpl.getPojoTypes()
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ome.model.display.RenderingDef |
RenderingSettingsImpl.getRenderingSettings(long pixelsId)
Implemented as specified by the IRenderingSettings I/F |
|
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TypesImpl.getResultTypes()
|
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Roles |
AdminImpl.getSecurityRoles()
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boolean |
LdapImpl.getSetting()
|
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Map |
MetadataImpl.getTaggedObjectsCount(Set<Long> tagIds,
ome.parameters.Parameters options)
Implemented as specified by the IMetadata I/F |
|
double |
RepositoryInfoImpl.getUsageFraction()
|
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long |
RepositoryInfoImpl.getUsedSpaceInKilobytes()
|
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Set |
PojosImpl.getUserImages(ome.parameters.Parameters options)
Implemented as specified by the IContainer I/F |
|
List<String> |
AdminImpl.getUserRoles(ome.model.meta.Experimenter e)
|
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ome.model.meta.ExperimenterGroup |
AdminImpl.groupProxy(Long id)
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ome.model.meta.ExperimenterGroup |
AdminImpl.groupProxy(String groupName)
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void |
UpdateImpl.indexObject(ome.model.IObject row)
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void |
QueryImpl.initialize(Object obj)
|
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ome.model.ILink[] |
PojosImpl.link(ome.model.ILink[] arg0,
ome.parameters.Parameters arg1)
Implemented as specified by the IContainer I/F |
|
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MetadataImpl.loadAnnotation(Set<Long> annotationIds)
Implemented as specified by the IMetadata I/F |
|
|
MetadataImpl.loadAnnotations(Class<T> rootNodeType,
Set<Long> rootNodeIds,
Set<String> annotationTypes,
Set<Long> annotatorIds,
ome.parameters.Parameters options)
Implemented as specified by the IMetadata I/F |
|
Set<ome.model.IObject> |
MetadataImpl.loadAnnotationsUsedNotOwned(Class annotationType,
long userID)
Implemented as specified by the IMetadata I/F |
|
Set |
MetadataImpl.loadChannelAcquisitionData(Set<Long> ids)
Implemented as specified by the IMetadata I/F |
|
Set |
PojosImpl.loadContainerHierarchy(Class rootNodeType,
Set rootNodeIds,
ome.parameters.Parameters options)
Implemented as speficied by the IContainer I/F |
|
Set<ome.model.IObject> |
MetadataImpl.loadInstrument(long id)
Implemented as specified by the IMetadata I/F |
|
ome.model.display.RenderingDef |
PixelsImpl.loadRndSettings(long renderingDefId)
Implemented as specified by the IPixels I/F. |
|
|
MetadataImpl.loadSpecifiedAnnotations(Class type,
Set<String> include,
Set<String> exclude,
ome.parameters.Parameters options)
Implemented as specified by the IMetadata I/F |
|
Map<Long,Set<ome.model.IObject>> |
MetadataImpl.loadTagContent(Set<Long> tagIds,
ome.parameters.Parameters options)
Implemented as specified by the IMetadata I/F |
|
Set<ome.model.IObject> |
MetadataImpl.loadTagSets(ome.parameters.Parameters options)
Implemented as specified by the IMetadata I/F |
|
ome.model.meta.Experimenter |
AdminImpl.lookupExperimenter(String omeName)
|
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List<ome.model.meta.Experimenter> |
AdminImpl.lookupExperimenters()
|
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ome.model.meta.ExperimenterGroup |
AdminImpl.lookupGroup(String groupName)
|
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List<ome.model.meta.ExperimenterGroup> |
AdminImpl.lookupGroups()
|
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String |
AdminImpl.lookupLdapAuthExperimenter(long id)
|
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List<Map<String,Object>> |
AdminImpl.lookupLdapAuthExperimenters()
|
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void |
AdminImpl.moveToCommonSpace(ome.model.IObject... iObjects)
|
|
|
TypesImpl.permissions(Class<T> k)
|
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List<Object[]> |
QueryImpl.projection(String query,
ome.parameters.Parameters p)
|
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void |
AdminImpl.removeGroupOwners(ome.model.meta.ExperimenterGroup group,
ome.model.meta.Experimenter... owner)
|
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void |
AdminImpl.removeGroups(ome.model.meta.Experimenter user,
ome.model.meta.ExperimenterGroup... groups)
|
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void |
RepositoryInfoImpl.removeUnusedFiles()
|
|
void |
RenderingSettingsImpl.resetDefaults(ome.model.display.RenderingDef def,
ome.model.core.Pixels pixels)
Implemented as specified by the IRenderingSettings I/F |
|
|
RenderingSettingsImpl.resetDefaultsByOwnerInSet(Class<T> klass,
Set<Long> nodeIds)
Implemented as specified by the IRenderingSettings I/F. |
|
void |
RenderingSettingsImpl.resetDefaultsForPixels(long to)
Implemented as specified by the IRenderingSettings I/F. |
|
Set<Long> |
RenderingSettingsImpl.resetDefaultsInDataset(long to)
Implemented as specified by the IRenderingSettings I/F. |
|
void |
RenderingSettingsImpl.resetDefaultsInImage(long to)
Implemented as specified by the IRenderingSettings I/F. |
|
|
RenderingSettingsImpl.resetDefaultsInSet(Class<T> klass,
Set<Long> nodeIds)
Implemented as specified by the IRenderingSettings I/F. |
|
ome.model.display.RenderingDef |
RenderingSettingsImpl.resetDefaultsNoSave(ome.model.display.RenderingDef def,
ome.model.core.Pixels pixels)
Implemented as specified by the IRenderingSettings I/F |
|
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TypesImpl.resetEnumerations(Class<T> klass)
|
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RenderingSettingsImpl.resetMinMaxInSet(Class<T> klass,
Set<Long> nodeIds)
Implemented as specified by the IRenderingSettings I/F. |
|
List<ome.model.IObject> |
PixelsImpl.retrieveAllRndSettings(long pixId,
long userId)
Implemented as specified by the IPixels I/F. |
|
Collection |
PojosImpl.retrieveCollection(ome.model.IObject arg0,
String arg1,
ome.parameters.Parameters arg2)
Implemented as specified by the IContainer I/F |
|
ome.model.core.Pixels |
PixelsImpl.retrievePixDescription(long pixId)
|
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ome.model.display.RenderingDef |
PixelsImpl.retrieveRndSettings(long pixId)
Implemented as specified by the IPixels I/F. |
|
ome.model.display.RenderingDef |
PixelsImpl.retrieveRndSettingsFor(long pixId,
long userId)
Implemented as specified by the IPixels I/F. |
|
void |
RepositoryInfoImpl.sanityCheckRepository()
|
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ome.model.IObject[] |
UpdateImpl.saveAndReturnArray(ome.model.IObject[] graph)
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List<Long> |
UpdateImpl.saveAndReturnIds(ome.model.IObject[] graph)
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ome.model.IObject |
UpdateImpl.saveAndReturnObject(ome.model.IObject graph)
|
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void |
UpdateImpl.saveArray(ome.model.IObject[] graph)
|
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void |
UpdateImpl.saveCollection(Collection graph)
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void |
UpdateImpl.saveObject(ome.model.IObject graph)
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void |
PixelsImpl.saveRndSettings(ome.model.display.RenderingDef rndSettings)
|
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List<ome.model.meta.Experimenter> |
LdapImpl.searchAll()
|
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List<ome.model.meta.Experimenter> |
LdapImpl.searchByAttribute(String dns,
String attr,
String value)
|
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List<ome.model.meta.Experimenter> |
LdapImpl.searchByAttributes(String dn,
String[] attributes,
String[] values)
|
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ome.model.meta.Experimenter |
LdapImpl.searchByDN(String dns)
|
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List<String> |
LdapImpl.searchDnInGroups(String attr,
String value)
|
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void |
PixelsImpl.setChannelGlobalMinMax(long pixelsId,
int channelIndex,
double min,
double max)
|
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void |
ConfigImpl.setConfigValue(String key,
String value)
see IConfig.setConfigValue(String, String) |
|
boolean |
ConfigImpl.setConfigValueIfEquals(String key,
String value,
String test)
see IConfig.setConfigValueIfEquals(String, String, String) |
|
void |
AdminImpl.setDefaultGroup(ome.model.meta.Experimenter user,
ome.model.meta.ExperimenterGroup group)
|
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void |
LdapImpl.setDN(Long experimenterID,
String dn)
|
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void |
AdminImpl.setGroupOwner(ome.model.meta.ExperimenterGroup group,
ome.model.meta.Experimenter owner)
|
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void |
RenderingSettingsImpl.setOriginalSettingsForPixels(long to)
Implemented as specified by the IRenderingSettings I/F. |
|
Set<Long> |
RenderingSettingsImpl.setOriginalSettingsInDataset(long to)
Implemented as specified by the IRenderingSettings I/F. |
|
void |
RenderingSettingsImpl.setOriginalSettingsInImage(long to)
Implemented as specified by the IRenderingSettings I/F. |
|
|
RenderingSettingsImpl.setOriginalSettingsInSet(Class<T> klass,
Set<Long> nodeIds)
Implemented as specified by the IRenderingSettings I/F. |
|
void |
AdminImpl.synchronizeLoginCache()
|
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void |
PojosImpl.unlink(ome.model.ILink[] arg0,
ome.parameters.Parameters arg1)
Implemented as specified by the IContainer I/F |
|
void |
AdminImpl.unsetGroupOwner(ome.model.meta.ExperimenterGroup group,
ome.model.meta.Experimenter owner)
|
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ome.model.IObject |
PojosImpl.updateDataObject(ome.model.IObject arg0,
ome.parameters.Parameters arg1)
Implemented as specified by the IContainer I/F |
|
ome.model.IObject[] |
PojosImpl.updateDataObjects(ome.model.IObject[] arg0,
ome.parameters.Parameters arg1)
Implemented as specified by the IContainer I/F |
|
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TypesImpl.updateEnumeration(T oEnum)
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TypesImpl.updateEnumerations(List<T> listEnum)
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void |
AdminImpl.updateExperimenter(ome.model.meta.Experimenter experimenter)
|
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void |
AdminImpl.updateExperimenterWithPassword(ome.model.meta.Experimenter experimenter,
String password)
|
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void |
AdminImpl.updateGroup(ome.model.meta.ExperimenterGroup group)
|
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void |
AdminImpl.updateSelf(ome.model.meta.Experimenter e)
|
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long |
AdminImpl.uploadMyUserPhoto(String filename,
String mimetype,
byte[] data)
|
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ome.model.meta.Experimenter |
AdminImpl.userProxy(Long id)
|
|
ome.model.meta.Experimenter |
AdminImpl.userProxy(String omeName)
|
Uses of RolesAllowed in ome.services |
---|
Methods in ome.services with annotations of type RolesAllowed | ||
---|---|---|
void |
JobBean.activate()
Does almost nothing. |
|
void |
RawFileBean.activate()
|
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void |
RawPixelsBean.activate()
|
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void |
RenderingBean.activate()
|
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void |
SearchBean.activate()
|
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void |
ThumbnailBean.activate()
|
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int |
SearchBean.activeQueries()
|
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void |
RenderingBean.addCodomainMap(CodomainMapContext mapCtx)
Implemented as specified by the RenderingEngine interface. |
|
void |
SearchBean.addOrderByAsc(String path)
|
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void |
SearchBean.addOrderByDesc(String path)
|
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void |
SearchBean.allTypes()
|
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void |
SearchBean.and()
|
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ome.model.jobs.JobStatus |
JobBean.attach(long id)
|
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void |
SearchBean.byAnnotatedWith(ome.model.annotations.Annotation... examples)
|
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void |
SearchBean.byFullText(String query)
|
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void |
SearchBean.byGroupForTags(String group)
|
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void |
SearchBean.byHqlQuery(String query,
ome.parameters.Parameters p)
|
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void |
SearchBean.bySimilarTerms(String... terms)
|
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void |
SearchBean.bySomeMustNone(String[] some,
String[] must,
String[] none)
|
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void |
SearchBean.byTagForGroups(String tag)
|
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void |
SearchBean.byUUID(String[] uuids)
|
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byte[] |
RawPixelsBean.calculateMessageDigest()
|
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void |
JobBean.cancelJob()
|
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void |
SearchBean.clearQueries()
|
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void |
JobBean.close()
|
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void |
RawFileBean.close()
|
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void |
RawPixelsBean.close()
|
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void |
RenderingBean.close()
|
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void |
SearchBean.close()
|
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void |
ThumbnailBean.close()
|
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void |
ThumbnailBean.createThumbnail(Integer sizeX,
Integer sizeY)
|
|
void |
ThumbnailBean.createThumbnails()
|
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void |
ThumbnailBean.createThumbnailsByLongestSideSet(Integer size,
Set<Long> pixelsIds)
|
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Map<String,ome.model.annotations.Annotation> |
SearchBean.currentMetadata()
|
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List<Map<String,ome.model.annotations.Annotation>> |
SearchBean.currentMetadataList()
|
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boolean |
RawFileBean.exists()
|
|
|
SearchBean.fetchAlso(Map<T,String> fetches)
|
|
void |
SearchBean.fetchAlso(String... fetches)
|
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void |
SearchBean.fetchAnnotations(Class... classes)
|
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List |
RenderingBean.getAvailableFamilies()
Implemented as specified by the RenderingEngine interface. |
|
List |
RenderingBean.getAvailableModels()
Implemented as specified by the RenderingEngine interface. |
|
int |
SearchBean.getBatchSize()
|
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int |
RawPixelsBean.getByteWidth()
|
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double |
RenderingBean.getChannelCurveCoefficient(int w)
Implemented as specified by the RenderingEngine interface. |
|
ome.model.enums.Family |
RenderingBean.getChannelFamily(int w)
Implemented as specified by the RenderingEngine interface. |
|
boolean |
RenderingBean.getChannelNoiseReduction(int w)
Implemented as specified by the RenderingEngine interface. |
|
double[] |
RenderingBean.getChannelStats(int w)
Implemented as specified by the RenderingEngine interface. |
|
double |
RenderingBean.getChannelWindowEnd(int w)
Implemented as specified by the RenderingEngine interface. |
|
double |
RenderingBean.getChannelWindowStart(int w)
Implemented as specified by the RenderingEngine interface. |
|
byte[] |
RawPixelsBean.getCol(int arg0,
int arg1,
int arg2,
int arg3)
|
|
float |
RenderingBean.getCompressionLevel()
Implemented as specified by the RenderingEngine interface. |
|
EventContext |
AbstractStatefulBean.getCurrentEventContext()
|
|
EventContext |
RenderingBean.getCurrentEventContext()
Implemented as specified by the RenderingEngine interface. |
|
int |
RenderingBean.getDefaultT()
Implemented as specified by the RenderingEngine interface. |
|
int |
RenderingBean.getDefaultZ()
Implemented as specified by the RenderingEngine interface. |
|
ome.model.jobs.Job |
JobBean.getJob()
|
|
ome.model.enums.RenderingModel |
RenderingBean.getModel()
Implemented as specified by the RenderingEngine interface. |
|
ome.model.core.Pixels |
RenderingBean.getPixels()
Implemented as specified by the RenderingEngine interface. |
|
long |
RawPixelsBean.getPixelsId()
|
|
double |
RenderingBean.getPixelsTypeLowerBound(int w)
Implemented as specified by the RenderingEngine interface. |
|
double |
RenderingBean.getPixelsTypeUpperBound(int w)
Implemented as specified by the RenderingEngine interface. |
|
byte[] |
RawPixelsBean.getPlane(int arg0,
int arg1,
int arg2)
|
|
long |
RawPixelsBean.getPlaneOffset(int arg0,
int arg1,
int arg2)
|
|
byte[] |
RawPixelsBean.getPlaneRegion(int z,
int c,
int t,
int count,
int offset)
|
|
int |
RawPixelsBean.getPlaneSize()
|
|
ome.model.display.QuantumDef |
RenderingBean.getQuantumDef()
Implemented as specified by the RenderingEngine interface. |
|
byte[] |
RawPixelsBean.getRegion(int arg0,
long arg1)
|
|
int[] |
RenderingBean.getRGBA(int w)
Implemented as specified by the RenderingEngine interface. |
|
byte[] |
RawPixelsBean.getRow(int arg0,
int arg1,
int arg2,
int arg3)
|
|
long |
RawPixelsBean.getRowOffset(int arg0,
int arg1,
int arg2,
int arg3)
|
|
int |
RawPixelsBean.getRowSize()
|
|
byte[] |
RawPixelsBean.getStack(int arg0,
int arg1)
|
|
long |
RawPixelsBean.getStackOffset(int arg0,
int arg1)
|
|
int |
RawPixelsBean.getStackSize()
|
|
byte[] |
ThumbnailBean.getThumbnail(Integer sizeX,
Integer sizeY)
|
|
byte[] |
ThumbnailBean.getThumbnailByLongestSide(Integer size)
|
|
byte[] |
ThumbnailBean.getThumbnailByLongestSideDirect(Integer size)
|
|
Map<Long,byte[]> |
ThumbnailBean.getThumbnailByLongestSideSet(Integer size,
Set<Long> pixelsIds)
|
|
byte[] |
ThumbnailBean.getThumbnailDirect(Integer sizeX,
Integer sizeY)
|
|
byte[] |
ThumbnailBean.getThumbnailForSectionByLongestSideDirect(int theZ,
int theT,
Integer size)
|
|
byte[] |
ThumbnailBean.getThumbnailForSectionDirect(int theZ,
int theT,
Integer sizeX,
Integer sizeY)
|
|
Map<Long,byte[]> |
ThumbnailBean.getThumbnailSet(Integer sizeX,
Integer sizeY,
Set<Long> pixelsIds)
|
|
byte[] |
RawPixelsBean.getTimepoint(int arg0)
|
|
long |
RawPixelsBean.getTimepointOffset(int arg0)
|
|
int |
RawPixelsBean.getTimepointSize()
|
|
int |
RawPixelsBean.getTotalSize()
|
|
boolean |
SearchBean.hasNext()
|
|
boolean |
RenderingBean.isActive(int w)
Implemented as specified by the RenderingEngine interface. |
|
boolean |
SearchBean.isAllowLeadingWildcard()
|
|
boolean |
SearchBean.isCaseSensitive()
|
|
boolean |
RawPixelsBean.isFloat()
|
|
boolean |
SearchBean.isMergedBatches()
|
|
boolean |
RenderingBean.isPixelsTypeSigned()
Implemented as specified by the RenderingEngine interface. |
|
boolean |
SearchBean.isReturnUnloaded()
|
|
boolean |
RawPixelsBean.isSigned()
|
|
boolean |
SearchBean.isUseProjections()
|
|
boolean |
JobBean.jobError()
|
|
Timestamp |
JobBean.jobFinished()
|
|
String |
JobBean.jobMessage()
|
|
boolean |
JobBean.jobRunning()
|
|
ome.model.jobs.JobStatus |
JobBean.jobStatus()
|
|
void |
SearchBean.lastresultsAsWorkingGroup()
|
|
void |
RenderingBean.load()
Implemented as specified by the RenderingEngine interface. |
|
void |
RenderingBean.loadRenderingDef(long renderingDefId)
Implemented as specified by the RenderingEngine interface. |
|
void |
RenderingBean.lookupPixels(long pixelsId)
Implemented as specified by the RenderingEngine interface. |
|
boolean |
RenderingBean.lookupRenderingDef(long pixelsId)
Implemented as specified by the RenderingEngine interface. |
|
ome.model.IObject |
SearchBean.next()
|
|
void |
SearchBean.not()
|
|
void |
SearchBean.notAnnotatedBy(ome.model.internal.Details d)
|
|
void |
SearchBean.notOwnedBy(ome.model.internal.Details d)
|
|
void |
SearchBean.onlyAnnotatedBetween(Timestamp start,
Timestamp stop)
|
|
void |
SearchBean.onlyAnnotatedBy(ome.model.internal.Details d)
|
|
void |
SearchBean.onlyAnnotatedWith(Class... classes)
|
|
void |
SearchBean.onlyCreatedBetween(Timestamp start,
Timestamp stop)
|
|
void |
SearchBean.onlyIds(Long... ids)
|
|
void |
SearchBean.onlyModifiedBetween(Timestamp start,
Timestamp stop)
|
|
void |
SearchBean.onlyOwnedBy(ome.model.internal.Details d)
|
|
|
SearchBean.onlyType(Class<T> klass)
|
|
|
SearchBean.onlyTypes(Class<T>... classes)
|
|
void |
SearchBean.or()
|
|
void |
JobBean.passivate()
Does nothing. |
|
void |
RawFileBean.passivate()
|
|
void |
RawPixelsBean.passivate()
|
|
void |
RenderingBean.passivate()
|
|
void |
SearchBean.passivate()
|
|
void |
ThumbnailBean.passivate()
|
|
void |
RawPixelsBean.prepare(Set<Long> pixelsIds)
|
|
byte[] |
RawFileBean.read(long position,
int length)
|
|
void |
SearchBean.remove()
|
|
void |
RenderingBean.removeCodomainMap(CodomainMapContext mapCtx)
Implemented as specified by the RenderingEngine interface. |
|
RGBBuffer |
RenderingBean.render(PlaneDef pd)
Implemented as specified by the RenderingEngine interface. |
|
int[] |
RenderingBean.renderAsPackedInt(PlaneDef pd)
Implemented as specified by the RenderingEngine interface. |
|
int[] |
RenderingBean.renderAsPackedIntAsRGBA(PlaneDef pd)
Implemented as specified by the RenderingEngine interface. |
|
byte[] |
RenderingBean.renderCompressed(PlaneDef pd)
Implemented as specified by the RenderingEngine interface. |
|
int[] |
RenderingBean.renderProjectedAsPackedInt(int algorithm,
int timepoint,
int stepping,
int start,
int end)
Implemented as specified by the RenderingEngine interface. |
|
byte[] |
RenderingBean.renderProjectedCompressed(int algorithm,
int timepoint,
int stepping,
int start,
int end)
Implemented as specified by the RenderingEngine interface. |
|
void |
RenderingBean.resetDefaults()
Implemented as specified by the RenderingEngine interface. |
|
void |
SearchBean.resetDefaults()
|
|
void |
ThumbnailBean.resetDefaults()
|
|
void |
RenderingBean.resetDefaultsNoSave()
Implemented as specified by the RenderingEngine interface. |
|
|
SearchBean.results()
|
|
ome.model.core.OriginalFile |
RawFileBean.save()
|
|
void |
RenderingBean.saveCurrentSettings()
Implemented as specified by the RenderingEngine interface. |
|
void |
RenderingBean.setActive(int w,
boolean active)
Implemented as specified by the RenderingEngine interface. |
|
void |
SearchBean.setAllowLeadingWildcard(boolean allowLeadingWildcard)
|
|
void |
SearchBean.setBatchSize(int size)
|
|
void |
SearchBean.setCaseSentivice(boolean caseSensitive)
|
|
void |
RenderingBean.setChannelWindow(int w,
double start,
double end)
Implemented as specified by the RenderingEngine interface. |
|
void |
RenderingBean.setCodomainInterval(int start,
int end)
Implemented as specified by the RenderingEngine interface. |
|
void |
RenderingBean.setCompressionLevel(float percentage)
Implemented as specified by the RenderingEngine interface. |
|
void |
RenderingBean.setDefaultT(int t)
Implemented as specified by the RenderingEngine interface. |
|
void |
RenderingBean.setDefaultZ(int z)
Implemented as specified by the RenderingEngine interface. |
|
void |
RawFileBean.setFileId(long fileId)
|
|
void |
SearchBean.setIdOnly()
|
|
void |
SearchBean.setMergedBatches(boolean merge)
|
|
String |
JobBean.setMessage(String message)
|
|
void |
RenderingBean.setModel(ome.model.enums.RenderingModel model)
Implemented as specified by the RenderingEngine interface. |
|
void |
RenderingBean.setOverlays(Map<byte[],Integer> overlays)
Implemented as specified by the RenderingEngine interface. |
|
boolean |
ThumbnailBean.setPixelsId(long id)
|
|
void |
RawPixelsBean.setPixelsId(long pixelsId,
boolean bypassOriginalFile)
|
|
void |
RawPixelsBean.setPlane(byte[] arg0,
int arg1,
int arg2,
int arg3)
|
|
void |
RenderingBean.setQuantizationMap(int w,
ome.model.enums.Family family,
double coefficient,
boolean noiseReduction)
Implemented as specified by the RenderingEngine interface. |
|
void |
RenderingBean.setQuantumStrategy(int bitResolution)
Implemented as specified by the RenderingEngine interface. |
|
void |
RawPixelsBean.setRegion(int arg0,
long arg1,
byte[] arg2)
|
|
void |
ThumbnailBean.setRenderingDefId(long id)
|
|
void |
SearchBean.setReturnUnloaded(boolean returnUnloaded)
|
|
void |
RenderingBean.setRGBA(int w,
int red,
int green,
int blue,
int alpha)
Implemented as specified by the RenderingEngine interface. |
|
void |
RawPixelsBean.setRow(byte[] arg0,
int arg1,
int arg2,
int arg3,
int arg4)
|
|
void |
RawPixelsBean.setStack(byte[] arg0,
int arg1,
int arg2,
int arg3)
|
|
String |
JobBean.setStatus(String status)
|
|
String |
JobBean.setStatusAndMessage(String status,
String message)
|
|
void |
RawPixelsBean.setTimepoint(byte[] arg0,
int arg1)
|
|
void |
SearchBean.setUseProjections(boolean useProjections)
|
|
long |
RawFileBean.size()
|
|
long |
JobBean.submit(ome.model.jobs.Job newJob)
|
|
boolean |
ThumbnailBean.thumbnailExists(Integer sizeX,
Integer sizeY)
|
|
boolean |
RawFileBean.truncate(long length)
|
|
void |
SearchBean.unordered()
|
|
void |
RenderingBean.updateCodomainMap(CodomainMapContext mapCtx)
Implemented as specified by the RenderingEngine interface. |
|
void |
RawFileBean.write(byte[] buf,
long position,
int length)
|
Uses of RolesAllowed in ome.services.delete |
---|
Methods in ome.services.delete with annotations of type RolesAllowed | |
---|---|
List<ome.model.IObject> |
DeleteBean.checkImageDelete(long id,
boolean force)
|
void |
DeleteBean.deleteImage(long id,
boolean force)
|
void |
DeleteBean.deleteImages(Set<Long> ids,
boolean force)
|
void |
DeleteBean.deleteImagesByDataset(long datasetId,
boolean force)
|
void |
DeleteBean.deletePlate(long plateId)
|
void |
DeleteBean.deleteSettings(long imageId)
|
List<ome.model.IObject> |
DeleteBean.previewImageDelete(long id,
boolean force)
This uses DeleteBean.IMAGE_QUERY to load all the subordinate metadata of the
Image which will be deleted. |
Uses of RolesAllowed in ome.services.licenses |
---|
Methods in ome.services.licenses with annotations of type RolesAllowed | |
---|---|
byte[] |
LicenseBean.acquireLicense()
See ILicense.acquireLicense() |
long |
LicenseBean.getAvailableLicenseCount()
See ILicense.getAvailableLicenseCount() |
long |
LicenseBean.getLicenseTimeout()
See ILicense.getLicenseTimeout() |
long |
LicenseBean.getTotalLicenseCount()
See ILicense.getTotalLicenseCount() |
boolean |
LicenseBean.releaseLicense(byte[] token)
See ILicense.releaseLicense(byte[]) |
void |
LicenseBean.resetLicenses()
See ILicense.resetLicenses() |
Uses of RolesAllowed in ome.services.projection |
---|
Methods in ome.services.projection with annotations of type RolesAllowed | |
---|---|
long |
ProjectionBean.projectPixels(long pixelsId,
ome.model.enums.PixelsType pixelsType,
int algorithm,
int tStart,
int tEnd,
List<Integer> channels,
int stepping,
int zStart,
int zEnd,
String name)
|
byte[] |
ProjectionBean.projectStack(long pixelsId,
ome.model.enums.PixelsType pixelsType,
int algorithm,
int timepoint,
int channelIndex,
int stepping,
int start,
int end)
|
Uses of RolesAllowed in ome.services.sessions |
---|
Methods in ome.services.sessions with annotations of type RolesAllowed | |
---|---|
int |
SessionBean.closeSession(ome.model.meta.Session session)
|
ome.model.meta.Session |
SessionBean.createSession(Principal principal,
String credentials)
|
ome.model.meta.Session |
SessionBean.createSessionWithTimeout(Principal principal,
long milliseconds)
|
ome.model.meta.Session |
SessionBean.createSessionWithTimeouts(Principal principal,
long timeToLiveMilliseconds,
long timeToIdleMilliseconds)
|
ome.model.meta.Session |
SessionBean.createUserSession(long timeToLiveMs,
long timeToIdleMs,
String defaultGroup)
|
Object |
SessionBean.getInput(String session,
String key)
|
Set<String> |
SessionBean.getInputKeys(String session)
|
Map<String,Object> |
SessionBean.getInputs(String session)
|
List<ome.model.meta.Session> |
SessionBean.getMyOpenAgentSessions(String agent)
|
List<ome.model.meta.Session> |
SessionBean.getMyOpenClientSessions()
|
List<ome.model.meta.Session> |
SessionBean.getMyOpenSessions()
|
Object |
SessionBean.getOutput(String session,
String key)
|
Set<String> |
SessionBean.getOutputKeys(String session)
|
Map<String,Object> |
SessionBean.getOutputs(String session)
|
int |
SessionBean.getReferenceCount(String sessionUuid)
|
ome.model.meta.Session |
SessionBean.getSession(String sessionUuid)
|
void |
SessionBean.setInput(String session,
String key,
Object object)
|
void |
SessionBean.setOutput(String session,
String key,
Object object)
|
ome.model.meta.Session |
SessionBean.updateSession(ome.model.meta.Session session)
|
Uses of RolesAllowed in ome.services.sharing |
---|
Methods in ome.services.sharing with annotations of type RolesAllowed | ||
---|---|---|
void |
ShareBean.activate(long shareId)
|
|
ome.model.annotations.CommentAnnotation |
ShareBean.addComment(long shareId,
String commentText)
|
|
void |
ShareBean.addGuest(long shareId,
String emailAddress)
|
|
void |
ShareBean.addGuests(long shareId,
String... emailAddresses)
|
|
|
ShareBean.addObject(long shareId,
T object)
|
|
|
ShareBean.addObjects(long shareId,
T... objects)
|
|
ome.model.annotations.CommentAnnotation |
ShareBean.addReply(long shareId,
String comment,
ome.model.annotations.CommentAnnotation replyTo)
|
|
void |
ShareBean.addUser(long shareId,
ome.model.meta.Experimenter exp)
|
|
void |
ShareBean.addUsers(long shareId,
ome.model.meta.Experimenter... exps)
|
|
void |
ShareBean.closeShare(long shareId)
|
|
|
ShareBean.createShare(String description,
Timestamp expiration,
List<T> items,
List<ome.model.meta.Experimenter> exps,
List<String> guests,
boolean enabled)
|
|
void |
ShareBean.deactivate()
|
|
void |
ShareBean.deleteComment(ome.model.annotations.Annotation comment)
|
|
Map<String,ome.model.meta.Experimenter> |
ShareBean.getActiveConnections(long shareId)
|
|
Set<String> |
ShareBean.getAllGuests(long shareId)
|
|
Set<ome.model.meta.Experimenter> |
ShareBean.getAllMembers(long shareId)
|
|
Set<String> |
ShareBean.getAllUsers(long shareId)
|
|
Map<Long,Long> |
ShareBean.getCommentCount(Set<Long> ids)
|
|
List<ome.model.annotations.Annotation> |
ShareBean.getComments(long shareId)
|
|
|
ShareBean.getContentMap(long shareId)
|
|
|
ShareBean.getContents(long shareId)
|
|
int |
ShareBean.getContentSize(long shareId)
|
|
|
ShareBean.getContentSubList(long shareId,
int start,
int finish)
|
|
List<ome.model.meta.Event> |
ShareBean.getEvents(long shareId,
ome.model.meta.Experimenter experimenter,
Timestamp from,
Timestamp to)
|
|
Map<Long,Long> |
ShareBean.getMemberCount(Set<Long> shareIds)
|
|
Set<ome.model.meta.Session> |
ShareBean.getMemberShares(boolean active)
|
|
Set<ome.model.meta.Session> |
ShareBean.getMemberSharesFor(ome.model.meta.Experimenter user,
boolean active)
|
|
Set<ome.model.meta.Session> |
ShareBean.getOwnShares(boolean active)
|
|
Map<String,ome.model.meta.Experimenter> |
ShareBean.getPastConnections(long shareId)
|
|
ome.model.meta.Session |
ShareBean.getShare(long sessionId)
|
|
Set<ome.model.meta.Session> |
ShareBean.getSharesOwnedBy(ome.model.meta.Experimenter user,
boolean active)
|
|
void |
ShareBean.invalidateConnection(long shareId,
ome.model.meta.Experimenter exp)
|
|
void |
ShareBean.removeGuest(long shareId,
String emailAddress)
|
|
void |
ShareBean.removeGuests(long shareId,
String... emailAddresses)
|
|
|
ShareBean.removeObject(long shareId,
T object)
|
|
|
ShareBean.removeObjects(long shareId,
T... objects)
|
|
void |
ShareBean.removeUser(long shareId,
ome.model.meta.Experimenter exp)
|
|
void |
ShareBean.removeUsers(long shareId,
List<ome.model.meta.Experimenter> exps)
|
|
void |
ShareBean.setActive(long shareId,
boolean active)
|
|
void |
ShareBean.setDescription(long shareId,
String description)
|
|
void |
ShareBean.setExpiration(long shareId,
Timestamp expiration)
|
|
||||||||||
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Version: Beta-4.2.0-r7571-b29
Copyright © 2009 The University of Dundee. All Rights Reserved.