Everything


All Classes

dict
exceptions.AssertionError
list
omero.ClientError
omero.UnloadedCollectionException
omero.UnloadedEntityException
omero.cli.BaseControl
omero.cli.CLI
omero.cli.CLI.PluginsLoaded
omero.cli.Context
omero.cli.DirectoryType
omero.cli.HelpFormatter
omero.cli.HelpFormatter._Section
omero.cli.NewFileType
omero.cli.NonZeroReturnCode
omero.cli.Parser
omero.cli.WriteOnceNamespace
omero.clients.BaseClient
omero.clients.BaseClient.CallbackI
omero.clients.ClientError
omero.clients.ObjectFactory
omero.clients.UnloadedCollectionException
omero.clients.UnloadedEntityException
omero.columns.AbstractColumn
omero.columns.BoolColumnI
omero.columns.DoubleColumnI
omero.columns.FileColumnI
omero.columns.ImageColumnI
omero.columns.LongColumnI
omero.columns.MaskColumnI
omero.columns.ObjectFactory
omero.columns.RoiColumnI
omero.columns.StringColumnI
omero.columns.WellColumnI
omero.config.ConfigXml
omero.gateway.AnnotationWrapper
omero.gateway.BlitzObjectWrapper
omero.gateway.BooleanAnnotationWrapper
omero.gateway.ColorHolder
omero.gateway.CommentAnnotationWrapper
omero.gateway.DetailsWrapper
omero.gateway.FileAnnotationWrapper
omero.gateway.LongAnnotationWrapper
omero.gateway.NoProxies
omero.gateway.ProxyObjectWrapper
omero.gateway.TagAnnotationWrapper
omero.gateway.TimeIt
omero.gateway.TimestampAnnotationWrapper
omero.gateway._ArcWrapper
omero.gateway._BlitzGateway
omero.gateway._ChannelWrapper
omero.gateway._DatasetWrapper
omero.gateway._DetectorSettingsWrapper
omero.gateway._DetectorWrapper
omero.gateway._DichroicWrapper
omero.gateway._EnumerationWrapper
omero.gateway._ExperimenterGroupWrapper
omero.gateway._ExperimenterWrapper
omero.gateway._FilamentWrapper
omero.gateway._FilterSetWrapper
omero.gateway._FilterWrapper
omero.gateway._ImageStageLabelWrapper
omero.gateway._ImageWrapper
omero.gateway._ImagingEnviromentWrapper
omero.gateway._ImagingEnvironmentWrapper
omero.gateway._InstrumentWrapper
omero.gateway._LaserWrapper
omero.gateway._LightEmittingDiodeWrapper
omero.gateway._LightPathWrapper
omero.gateway._LightSettingsWrapper
omero.gateway._LightSourceWrapper
omero.gateway._LogicalChannelWrapper
omero.gateway._MicroscopeWrapper
omero.gateway._OTFWrapper
omero.gateway._ObjectiveSettingsWrapper
omero.gateway._ObjectiveWrapper
omero.gateway._ProjectWrapper
omero.gateway._TransmittanceRangeWrapper
omero.gateway.scripts.dbhelpers.DatasetEntry
omero.gateway.scripts.dbhelpers.ImageEntry
omero.gateway.scripts.dbhelpers.ObjectEntry
omero.gateway.scripts.dbhelpers.ProjectEntry
omero.gateway.scripts.dbhelpers.UserEntry
omero.gateway.scripts.testdb_create.GTest
omero.install.logs_library.MyLine
omero.install.logs_library.allthreads_watcher
omero.install.logs_library.log_line
omero.install.logs_library.log_watcher
omero.install.logs_library.saveAndReturnObject_watcher
omero.install.perf_test.BadCommand
omero.install.perf_test.BadImport
omero.install.perf_test.BadLine
omero.install.perf_test.BadPath
omero.install.perf_test.Context
omero.install.perf_test.CsvReporter
omero.install.perf_test.HdfReporter
omero.install.perf_test.Item
omero.install.perf_test.ItemException
omero.install.perf_test.PerfHandler
omero.install.perf_test.PlotReporter
omero.install.perf_test.Reporter
omero.plugins.admin.AdminControl
omero.plugins.basics.HelpControl
omero.plugins.basics.LoadControl
omero.plugins.basics.QuitControl
omero.plugins.basics.ShellControl
omero.plugins.basics.VersionControl
omero.plugins.db.DatabaseControl
omero.plugins.delete.DeleteControl
omero.plugins.download.DownloadControl
omero.plugins.export.ExportControl
omero.plugins.group.GroupControl
omero.plugins.hql.HqlControl
omero.plugins.import.ImportControl
omero.plugins.import.TestEngine
omero.plugins.node.NodeControl
omero.plugins.perf.PerfControl
omero.plugins.prefs.PrefsControl
omero.plugins.script.ScriptControl
omero.plugins.server.ServerControl
omero.plugins.sessions.SessionsControl
omero.plugins.submit.Cancel
omero.plugins.submit.Save
omero.plugins.submit.SubmitCLI
omero.plugins.submit.SubmitControl
omero.plugins.upload.UploadControl
omero.plugins.user.UserControl
omero.plugins.web.WebControl
omero.processor.ProcessI
omero.processor.ProcessorI
omero.processor.UseSessionHolder
omero.processor.WithGroup
omero.rtypes.ObjectFactory
omero.rtypes.RArrayI
omero.rtypes.RBoolI
omero.rtypes.RClassI
omero.rtypes.RDoubleI
omero.rtypes.RFloatI
omero.rtypes.RIntI
omero.rtypes.RInternalI
omero.rtypes.RListI
omero.rtypes.RLongI
omero.rtypes.RMapI
omero.rtypes.RObjectI
omero.rtypes.RSetI
omero.rtypes.RStringI
omero.rtypes.RTimeI
omero.scripts.Bool
omero.scripts.Color
omero.scripts.Double
omero.scripts.Float
omero.scripts.Int
omero.scripts.List
omero.scripts.Long
omero.scripts.Map
omero.scripts.MissingInputs
omero.scripts.ParseExit
omero.scripts.Plane
omero.scripts.Point
omero.scripts.ProcessCallbackI
omero.scripts.Set
omero.scripts.String
omero.scripts.Type
omero.scripts.__Coll
omero.tables.HdfList
omero.tables.HdfStorage
omero.tables.TableI
omero.tables.TablesI
omero.util.Environment
omero.util.OmeroPopo.DataObject
omero.util.OmeroPopo.EllipseData
omero.util.OmeroPopo.ImageData
omero.util.OmeroPopo.MaskData
omero.util.OmeroPopo.PolygonData
omero.util.OmeroPopo.ROICoordinate
omero.util.OmeroPopo.ROIData
omero.util.OmeroPopo.RectData
omero.util.OmeroPopo.ShapeData
omero.util.OmeroPopo.WorkflowData
omero.util.ROIDrawingUtils.DrawingCanvas
omero.util.ROI_utils.EllipseData
omero.util.ROI_utils.LineData
omero.util.ROI_utils.MaskData
omero.util.ROI_utils.PointData
omero.util.ROI_utils.PolygonData
omero.util.ROI_utils.PolylineData
omero.util.ROI_utils.ROICoordinate
omero.util.ROI_utils.ROIDrawingI
omero.util.ROI_utils.RectangleData
omero.util.ROI_utils.ShapeData
omero.util.ROI_utils.ShapeSettingsData
omero.util.Resources
omero.util.Servant
omero.util.Server
omero.util.ServerContext
omero.util.SimpleServant
omero.util.StreamRedirect
omero.util.cleanse.Cleanser
omero.util.concurrency.Timer
omero.util.importperf.Import
omero.util.importperf.ImporterLog
omero.util.importperf.ParsingError
omero.util.importperf.Plane
omero.util.importperf.Series
omero.util.mpfit.machar
omero.util.mpfit.mpfit
omero.util.populate_roi.AbstractMeasurementCtx
omero.util.populate_roi.AbstractPlateAnalysisCtx
omero.util.populate_roi.DownloadingOriginalFileProvider
omero.util.populate_roi.FlexMeasurementCtx
omero.util.populate_roi.FlexPlateAnalysisCtx
omero.util.populate_roi.InCellMeasurementCtx
omero.util.populate_roi.InCellPlateAnalysisCtx
omero.util.populate_roi.MIASMeasurementCtx
omero.util.populate_roi.MIASPlateAnalysisCtx
omero.util.populate_roi.MeasurementError
omero.util.populate_roi.MeasurementParsingResult
omero.util.populate_roi.PlateAnalysisCtxFactory
omero.util.sessions.SessionsStore
omero.util.temp_files.TempFileManager
omero.util.text.ALIGN
omero.util.text.Column
omero.util.text.Table
omero.util.text.TableBuilder
omero.util.upgrade_check.UpgradeCheck
omero.util.uploadMask.MaskClass
omero.util.uploadMask.Point
omero.util.uploadMask.ROIClass
omero.util.uploadMask.uploadMask

All Functions

omero.cli.argv
omero.client
omero.client_wrapper
omero.columns.columns2definition
omero.gateway.LightSourceWrapper
omero.gateway.assert_pixels
omero.gateway.assert_re
omero.gateway.omero_type
omero.gateway.safeCallWrap
omero.gateway.scripts.dbhelpers.assertCommentAnnotation
omero.gateway.scripts.dbhelpers.bootstrap
omero.gateway.scripts.dbhelpers.cleanup
omero.gateway.scripts.dbhelpers.getDataset
omero.gateway.scripts.dbhelpers.getImage
omero.gateway.scripts.dbhelpers.getProject
omero.gateway.scripts.dbhelpers.get_bin_omero
omero.gateway.scripts.dbhelpers.login
omero.gateway.scripts.dbhelpers.loginAsRoot
omero.gateway.splitHTMLColor
omero.gateway.timeit
omero.install.bzip2_tool._swap
omero.install.bzip2_tool.bzip2_tool
omero.install.change_ports.change_ports
omero.install.change_ports.line_has_port
omero.install.logs_library.parse_time
omero.install.logs_library.plot_threads
omero.install.perf_test.handle
omero.install.perf_test.main
omero.install.perf_test.usage
omero.install.versions.needs_upgrade
omero.install.win_set_path.win_set_path
omero.java.check_java
omero.java.cmd
omero.java.makeVar
omero.java.popen
omero.java.run
omero.plugins.prefs.getprefs
omero.plugins.prefs.with_config
omero.processor.usermode_processor
omero.processor.with_context
omero.rtypes.rarray
omero.rtypes.rbool
omero.rtypes.rclass
omero.rtypes.rdouble
omero.rtypes.rfloat
omero.rtypes.rint
omero.rtypes.rinternal
omero.rtypes.rlist
omero.rtypes.rlong
omero.rtypes.rmap
omero.rtypes.robject
omero.rtypes.rset
omero.rtypes.rstring
omero.rtypes.rtime
omero.rtypes.rtype
omero.rtypes.unwrap
omero.rtypes.wrap
omero.scripts.check_boundaries
omero.scripts.check_values
omero.scripts.client
omero.scripts.compare_proto
omero.scripts.error_msg
omero.scripts.expand
omero.scripts.group_params
omero.scripts.handleParse
omero.scripts.parse_file
omero.scripts.parse_input
omero.scripts.parse_inputs
omero.scripts.parse_text
omero.scripts.set_input
omero.scripts.validate_inputs
omero.scripts.wait
omero.tables.slen
omero.tables.stamped
omero.util.FactoryMap.map
omero.util.OmeroPopo.shapeWrapper
omero.util.OmeroPopo.toCSV
omero.util.OmeroPopo.toList
omero.util.ROI_utils.abstract
omero.util.add_grid_object
omero.util.cleanse.cleanse
omero.util.cleanse.main
omero.util.cleanse.usage
omero.util.concurrency.get_event
omero.util.configure_logging
omero.util.configure_server_logging
omero.util.create_admin_session
omero.util.decorators.locked
omero.util.decorators.perf
omero.util.decorators.remoted
omero.util.edit_path
omero.util.figureUtil.formatTime
omero.util.figureUtil.getDatasetsProjectsFromImages
omero.util.figureUtil.getTagsFromImages
omero.util.figureUtil.getTimeLabels
omero.util.figureUtil.getTimes
omero.util.get_user_dir
omero.util.goodeval.goodeval
omero.util.imageUtil.RGBIntToRGB
omero.util.imageUtil.RGBIntToRGBA
omero.util.imageUtil.checkRGBRange
omero.util.imageUtil.getFont
omero.util.imageUtil.getThumbnail
omero.util.imageUtil.getThumbnailSet
omero.util.imageUtil.getZoomFactor
omero.util.imageUtil.paintThumbnailGrid
omero.util.imageUtil.pasteImage
omero.util.imageUtil.resizeImage
omero.util.import_candidates._to_list
omero.util.import_candidates.as_dictionary
omero.util.import_candidates.as_stdout
omero.util.importperf.usage
omero.util.internal_service_factory
omero.util.long_to_path
omero.util.make_logname
omero.util.originalfileutils.getExtension
omero.util.originalfileutils.getFormat
omero.util.pixelstypetopython.toArray
omero.util.pixelstypetopython.toNumpy
omero.util.pixelstypetopython.toPIL
omero.util.pixelstypetopython.toPython
omero.util.populate_roi.usage
omero.util.script_utils.IdentityFn
omero.util.script_utils.RGBToPIL
omero.util.script_utils.addAnnotationToImage
omero.util.script_utils.arrayToCSV
omero.util.script_utils.attachArrayToImage
omero.util.script_utils.attachFileToParent
omero.util.script_utils.calcSha1
omero.util.script_utils.calcSha1FromData
omero.util.script_utils.createFile
omero.util.script_utils.createFileFromData
omero.util.script_utils.createNewImage
omero.util.script_utils.createPlaneDef
omero.util.script_utils.downloadFile
omero.util.script_utils.downloadPlane
omero.util.script_utils.drawLineOverlay
omero.util.script_utils.drawTextOverlay
omero.util.script_utils.findROIByImage
omero.util.script_utils.getFormat
omero.util.script_utils.getPlaneAsPackedInt
omero.util.script_utils.getPlaneInfo
omero.util.script_utils.getROIFromImage
omero.util.script_utils.getRawFileStore
omero.util.script_utils.getRawPixelsStore
omero.util.script_utils.getRenderingEngine
omero.util.script_utils.parseInputs
omero.util.script_utils.rangeToStr
omero.util.script_utils.readFileAsArray
omero.util.script_utils.readFlimImageFile
omero.util.script_utils.readFromOriginalFile
omero.util.script_utils.registerNamespace
omero.util.script_utils.resetRenderingSettings
omero.util.script_utils.rgbToRGBInt
omero.util.script_utils.rmdir_recursive
omero.util.script_utils.toCSV
omero.util.script_utils.toList
omero.util.script_utils.uploadAndAttachFile
omero.util.script_utils.uploadArray
omero.util.script_utils.uploadFile
omero.util.script_utils.uploadPlane
omero.util.script_utils.uploadPlaneByRow
omero.util.setidreport.download
omero.util.setidreport.report
omero.util.setidreport.summary
omero.util.setidreport.usage
omero.util.tail_lines
omero.util.temp_files.create_path
omero.util.temp_files.gettempdir
omero.util.temp_files.remove_path

All Variables

omero.__import_style__
omero.cli.COMMENT
omero.cli.DEBUG
omero.cli.LINEWSP
omero.cli.OMEROCLI
omero.cli.OMERODIR
omero.cli.OMERODOC
omero.cli.OMEROHELP
omero.cli.OMEROSHELL
omero.cli.OMEROSUBM
omero.cli.OMEROSUBS
omero.cli.RELFILE
omero.cli.VERSION
omero.cli.sys
omero.clients.__name__
omero.clients.api
omero.clients.model
omero.clients.sys
omero.columns.ObjectFactories
omero.columns.has_pytables
omero.columns.tables
omero.gateway.THISPATH
omero.gateway._LightSourceClasses
omero.gateway.logger
omero.gateway.scripts.dbhelpers.BASEPATH
omero.gateway.scripts.dbhelpers.DATASETS
omero.gateway.scripts.dbhelpers.IMAGES
omero.gateway.scripts.dbhelpers.NEWSTYLEPERMS
omero.gateway.scripts.dbhelpers.PROJECTS
omero.gateway.scripts.dbhelpers.ROOT
omero.gateway.scripts.dbhelpers.TESTIMG_URL
omero.gateway.scripts.dbhelpers.USERS
omero.gateway.scripts.dbhelpers.omero_version
omero.install.change_ports.DIR
omero.install.change_ports.ETC
omero.install.change_ports.GRID
omero.install.perf_test.FILE_FORMAT
omero.install.perf_test.command_pattern
omero.install.perf_test.command_pattern_compiled
omero.install.perf_test.log
omero.install.perf_test.parser
omero.install.versions.LOG
omero.install.versions.REGEX
omero.install.win_set_path.cfg
omero.install.win_set_path.dir
omero.install.win_set_path.xml
omero.java.DEFAULT_DEBUG
omero.plugins.admin.HELP
omero.plugins.admin.has_win32
omero.plugins.basics.controls
omero.plugins.db.HELP
omero.plugins.db.cli
omero.plugins.delete.HELP
omero.plugins.download.HELP
omero.plugins.export.HELP
omero.plugins.group.HELP
omero.plugins.hql.HELP
omero.plugins.import.HELP
omero.plugins.import.START_CLASS
omero.plugins.import.TESTHELP
omero.plugins.import.TEST_CLASS
omero.plugins.node.HELP
omero.plugins.perf.HELP
omero.plugins.perf.PROG_NAME
omero.plugins.prefs.HELP
omero.plugins.script.DEMO_SCRIPT
omero.plugins.script.HELP
omero.plugins.script.RE0
omero.plugins.script.RE1
omero.plugins.server.HELP
omero.plugins.sessions.HELP
omero.plugins.sessions.LONGHELP
omero.plugins.submit.HELP
omero.plugins.submit.prompt
omero.plugins.upload.HELP
omero.plugins.upload.RE
omero.plugins.upload.hash_sha1
omero.plugins.user.HELP
omero.plugins.web.HELP
omero.rtypes.ObjectFactories
omero.rtypes.remptyclass
omero.rtypes.remptystr
omero.rtypes.rfalse
omero.rtypes.rint0
omero.rtypes.rlong0
omero.rtypes.rnullinternal
omero.rtypes.rnullobject
omero.rtypes.rtrue
omero.scripts.PROC_LOG
omero.scripts.TYPE_LOG
omero.tables.HDFLIST
omero.tables.sys
omero.tables.tables
omero.util.LOGDIR
omero.util.LOGFORMAT
omero.util.LOGLEVEL
omero.util.LOGMODE
omero.util.LOGNUM
omero.util.LOGSIZE
omero.util.cleanse.SEARCH_DIRECTORIES
omero.util.decorators.__EXCEPT
omero.util.decorators.__FORMAT
omero.util.decorators.__RESULT
omero.util.decorators.perf_log
omero.util.figureUtil.HOURS
omero.util.figureUtil.HOURS_MINS
omero.util.figureUtil.HOURS_MINS_SECS
omero.util.figureUtil.HOURS_MINS_SECS_MILLIS
omero.util.figureUtil.MINS
omero.util.figureUtil.MINS_SECS
omero.util.figureUtil.SECS
omero.util.figureUtil.SECS_MILLIS
omero.util.figureUtil.TIME_UNITS
omero.util.imageUtil.GATEWAYPATH
omero.util.orig_stderr
omero.util.orig_stdout
omero.util.originalfileutils.IMPORTER
omero.util.originalfileutils.KNOWNMIMETYPE
omero.util.originalfileutils.UNKNOWN
omero.util.originalfileutils.formatMap
omero.util.originalfileutils.importerMap
omero.util.pixelstypetopython.DOUBLE
omero.util.pixelstypetopython.FLOAT
omero.util.pixelstypetopython.INT_16
omero.util.pixelstypetopython.INT_32
omero.util.pixelstypetopython.INT_8
omero.util.pixelstypetopython.UINT_16
omero.util.pixelstypetopython.UINT_32
omero.util.pixelstypetopython.UINT_8
omero.util.populate_roi.log
omero.util.script_utils.COLOURS
omero.util.script_utils.CSV_FORMAT
omero.util.script_utils.CSV_NS
omero.util.script_utils.EXTRA_COLOURS
omero.util.script_utils.hash_sha1
omero.util.setidreport.API_SUFFIX
omero.util.setidreport.TEST_SUFFIX
omero.util.setidreport.URLs
omero.util.temp_files.manager

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