ome.services.blitz.impl
Class OmeroMetadata

java.lang.Object
  extended by ome.services.blitz.impl.OmeroMetadata
All Implemented Interfaces:
loci.formats.meta.MetadataRetrieve

public class OmeroMetadata
extends Object
implements loci.formats.meta.MetadataRetrieve

An implementation for MetadataStore and MetadataRetrieve that knows how to read and write the OMERO object model.

Author:
Josh Moore josh at glencoesoftware.com, Chris Allan callan at blackcat.ca, Curtis Rueden ctrueden at wisc.edu

Constructor Summary
OmeroMetadata(DatabaseIdentity db)
           
 
Method Summary
 void addImage(omero.model.Image image)
           
 String getArcType(int idxInstrument, int idxLightSource)
           
 String getChannelComponentColorDomain(int idxImage, int idxLogicalChannel, int idxChannelComponent)
           
 int getChannelComponentCount(int idxImage, int idxLogicalChannel)
           
 Integer getChannelComponentIndex(int idxImage, int idxLogicalChannel, int idxChannelComponent)
           
 String getChannelComponentPixels(int idxImage, int idxLogicalChannel, int idxChannelComponent)
           
 String getCircleCx(int idxImage, int idxROI, int idxShape)
           
 String getCircleCy(int idxImage, int idxROI, int idxShape)
           
 String getCircleID(int idxImage, int idxROI, int idxShape)
           
 String getCircleR(int idxImage, int idxROI, int idxShape)
           
 String getCircleTransform(int idxImage, int idxROI, int idxShape)
           
 String getContactExperimenter(int idxGroup)
           
 int getDatasetCount()
           
 String getDatasetDescription(int idxDataset)
           
 String getDatasetExperimenterRef(int idxDataset)
           
 String getDatasetGroupRef(int idxDataset)
           
 String getDatasetID(int idxDataset)
           
 Boolean getDatasetLocked(int idxDataset)
           
 String getDatasetName(int idxDataset)
           
 int getDatasetRefCount(int idxImage)
           
 String getDatasetRefID(int idxImage, int idxDatasetRef)
           
 Float getDetectorAmplificationGain(int idxInstrument, int idxDetector)
           
 int getDetectorCount(int idxInstrument)
           
 Float getDetectorGain(int idxInstrument, int idxDetector)
           
 String getDetectorID(int idxInstrument, int idxDetector)
           
 String getDetectorManufacturer(int idxInstrument, int idxDetector)
           
 String getDetectorModel(int idxInstrument, int idxDetector)
           
 Float getDetectorOffset(int idxInstrument, int idxDetector)
           
 String getDetectorSerialNumber(int idxInstrument, int idxDetector)
           
 String getDetectorSettingsBinning(int imageIndex, int logicalChannelIndex)
           
 String getDetectorSettingsDetector(int imageIndex, int logicalChannelIndex)
           
 Float getDetectorSettingsGain(int imageIndex, int logicalChannelIndex)
           
 Float getDetectorSettingsOffset(int imageIndex, int logicalChannelIndex)
           
 Float getDetectorSettingsReadOutRate(int imageIndex, int logicalChannelIndex)
           
 Float getDetectorSettingsVoltage(int imageIndex, int logicalChannelIndex)
           
 String getDetectorType(int idxInstrument, int idxDetector)
           
 Float getDetectorVoltage(int idxInstrument, int idxDetector)
           
 Float getDetectorZoom(int idxInstrument, int idxDetector)
           
 int getDichroicCount(int idxInstrument)
           
 String getDichroicID(int arg0, int arg1)
           
 String getDichroicLotNumber(int idxInstrument, int idxDichroic)
           
 String getDichroicManufacturer(int idxInstrument, int idxDichroic)
           
 String getDichroicModel(int idxInstrument, int idxDichroic)
           
 Float getDimensionsPhysicalSizeX(int imageIndex, int pixelsIndex)
           
 Float getDimensionsPhysicalSizeY(int imageIndex, int pixelsIndex)
           
 Float getDimensionsPhysicalSizeZ(int imageIndex, int pixelsIndex)
           
 Float getDimensionsTimeIncrement(int imageIndex, int pixelsIndex)
           
 Integer getDimensionsWaveIncrement(int imageIndex, int pixelsIndex)
           
 Integer getDimensionsWaveStart(int imageIndex, int pixelsIndex)
           
 String getDisplayOptionsDisplay(int idxImage)
           
 String getDisplayOptionsID(int idxImage)
           
 Integer getDisplayOptionsProjectionZStart(int imageIndex)
           
 Integer getDisplayOptionsProjectionZStop(int imageIndex)
           
 Integer getDisplayOptionsTimeTStart(int imageIndex)
           
 Integer getDisplayOptionsTimeTStop(int imageIndex)
           
 Float getDisplayOptionsZoom(int idxImage)
           
 String getEllipseCx(int idxImage, int idxROI, int idxShape)
           
 String getEllipseCy(int idxImage, int idxROI, int idxShape)
           
 String getEllipseID(int idxImage, int idxROI, int idxShape)
           
 String getEllipseRx(int idxImage, int idxROI, int idxShape)
           
 String getEllipseRy(int idxImage, int idxROI, int idxShape)
           
 String getEllipseTransform(int idxImage, int idxROI, int idxShape)
           
 String getEmFilterLotNumber(int instrumentIndex, int filterIndex)
           
 String getEmFilterManufacturer(int instrumentIndex, int filterIndex)
           
 String getEmFilterModel(int instrumentIndex, int filterIndex)
           
 String getEmFilterType(int instrumentIndex, int filterIndex)
           
 String getExFilterLotNumber(int instrumentIndex, int filterIndex)
           
 String getExFilterManufacturer(int instrumentIndex, int filterIndex)
           
 String getExFilterModel(int instrumentIndex, int filterIndex)
           
 String getExFilterType(int instrumentIndex, int filterIndex)
           
 int getExperimentCount()
           
 String getExperimentDescription(int idxExperiment)
           
 int getExperimenterCount()
           
 String getExperimenterEmail(int idxExperimenter)
           
 String getExperimenterFirstName(int idxExperimenter)
           
 String getExperimenterID(int idxExperimenter)
           
 String getExperimenterInstitution(int idxExperimenter)
           
 String getExperimenterLastName(int idxExperimenter)
           
 int getExperimenterMembershipCount(int experimenterIndex)
           
 String getExperimenterMembershipGroup(int experimenterIndex, int groupRefIndex)
           
 String getExperimenterOMEName(int idxExperimenter)
           
 String getExperimentExperimenterRef(int idxExperiment)
           
 String getExperimentID(int idxExperiment)
           
 String getExperimentType(int idxExperiment)
           
 String getFilamentType(int idxInstrument, int idxLightSource)
           
 int getFilterCount(int idxInstrument)
           
 String getFilterFilterWheel(int idxInstrument, int idxFilter)
           
 String getFilterID(int arg0, int arg1)
           
 String getFilterLotNumber(int idxInstrument, int idxFilter)
           
 String getFilterManufacturer(int idxInstrument, int idxFilter)
           
 String getFilterModel(int idxInstrument, int idxFilter)
           
 int getFilterSetCount(int idxInstrument)
           
 String getFilterSetDichroic(int idxInstrument, int idxFilterSet)
           
 String getFilterSetEmFilter(int idxInstrument, int idxFilterSet)
           
 String getFilterSetExFilter(int idxInstrument, int idxFilterSet)
           
 String getFilterSetID(int arg0, int arg1)
           
 String getFilterSetLotNumber(int idxInstrument, int idxFilterSet)
           
 String getFilterSetManufacturer(int idxInstrument, int idxFilterSet)
           
 String getFilterSetModel(int idxInstrument, int idxFilterSet)
           
 String getFilterType(int idxInstrument, int idxFilter)
           
 Float getGreyChannelBlackLevel(int idxImage)
           
 Integer getGreyChannelChannelNumber(int idxImage)
           
 Float getGreyChannelGamma(int idxImage)
           
 Boolean getGreyChannelisOn(int idxImage)
           
 String getGreyChannelMapColorMap(int imageIndex)
           
 Float getGreyChannelWhiteLevel(int idxImage)
           
 int getGroupCount()
           
 String getGroupID(int arg0)
           
 String getGroupName(int idxGroup)
           
 int getGroupRefCount(int idxExperimenter)
           
 omero.model.Image getImage(int i)
           
 String getImageAcquiredPixels(int idxImage)
           
 int getImageCount()
           
 String getImageCreationDate(int idxImage)
           
 String getImageDefaultPixels(int idxImage)
           
 String getImageDescription(int idxImage)
           
 String getImageExperimenterRef(int idxImage)
           
 String getImageExperimentRef(int idxImage)
           
 String getImageGroupRef(int idxImage)
           
 String getImageID(int idxImage)
           
 String getImageInstrumentRef(int idxImage)
           
 String getImageName(int idxImage)
           
 String getImageObjective(int idxImage)
           
 Float getImagingEnvironmentAirPressure(int idxImage)
           
 Float getImagingEnvironmentCO2Percent(int idxImage)
           
 Float getImagingEnvironmentHumidity(int idxImage)
           
 Float getImagingEnvironmentTemperature(int idxImage)
           
 int getInstrumentCount()
           
 String getInstrumentID(int idxInstrument)
           
 Integer getLaserFrequencyMultiplication(int idxInstrument, int idxLightSource)
           
 String getLaserLaserMedium(int idxInstrument, int idxLightSource)
           
 Boolean getLaserPockelCell(int idxInstrument, int idxLightSource)
           
 String getLaserPulse(int idxInstrument, int idxLightSource)
           
 Boolean getLaserRepetitionRate(int idxInstrument, int idxLightSource)
           
 Boolean getLaserTuneable(int idxInstrument, int idxLightSource)
           
 String getLaserType(int idxInstrument, int idxLightSource)
           
 Integer getLaserWavelength(int idxInstrument, int idxLightSource)
           
 int getLightSourceCount(int idxInstrument)
           
 String getLightSourceID(int idxInstrument, int idxLightSource)
           
 String getLightSourceManufacturer(int idxInstrument, int idxLightSource)
           
 String getLightSourceModel(int idxInstrument, int idxLightSource)
           
 Float getLightSourcePower(int idxInstrument, int idxLightSource)
           
 Float getLightSourceRefAttenuation(int idxImage, int idxMicrobeamManipulation, int idxLightSourceRef)
           
 int getLightSourceRefCount(int idxImage, int idxMicrobeamManipulation)
           
 String getLightSourceRefLightSource(int idxImage, int idxMicrobeamManipulation, int idxLightSourceRef)
           
 Integer getLightSourceRefWavelength(int idxImage, int idxMicrobeamManipulation, int idxLightSourceRef)
           
 String getLightSourceSerialNumber(int idxInstrument, int idxLightSource)
           
 Float getLightSourceSettingsAttenuation(int imageIndex, int logicalChannelIndex)
           
 String getLightSourceSettingsLightSource(int imageIndex, int logicalChannelIndex)
           
 Integer getLightSourceSettingsWavelength(int imageIndex, int logicalChannelIndex)
           
 String getLineID(int idxImage, int idxROI, int idxShape)
           
 String getLineTransform(int idxImage, int idxROI, int idxShape)
           
 String getLineX1(int idxImage, int idxROI, int idxShape)
           
 String getLineX2(int idxImage, int idxROI, int idxShape)
           
 String getLineY1(int idxImage, int idxROI, int idxShape)
           
 String getLineY2(int idxImage, int idxROI, int idxShape)
           
 String getLogicalChannelContrastMethod(int idxImage, int idxLogicalChannel)
           
 int getLogicalChannelCount(int idxImage)
           
 String getLogicalChannelDetector(int idxImage, int idxLogicalChannel)
           
 Integer getLogicalChannelEmWave(int idxImage, int idxLogicalChannel)
           
 Integer getLogicalChannelExWave(int idxImage, int idxLogicalChannel)
           
 String getLogicalChannelFilterSet(int idxImage, int idxLogicalChannel)
           
 String getLogicalChannelFluor(int idxImage, int idxLogicalChannel)
           
 String getLogicalChannelID(int idxImage, int idxLogicalChannel)
           
 String getLogicalChannelIlluminationType(int idxImage, int idxLogicalChannel)
           
 String getLogicalChannelLightSource(int idxImage, int idxLogicalChannel)
           
 String getLogicalChannelMode(int idxImage, int idxLogicalChannel)
           
 String getLogicalChannelName(int idxImage, int idxLogicalChannel)
           
 Float getLogicalChannelNdFilter(int idxImage, int idxLogicalChannel)
           
 String getLogicalChannelOTF(int idxImage, int idxLogicalChannel)
           
 String getLogicalChannelPhotometricInterpretation(int idxImage, int idxLogicalChannel)
           
 Float getLogicalChannelPinholeSize(int idxImage, int idxLogicalChannel)
           
 Integer getLogicalChannelPockelCellSetting(int idxImage, int idxLogicalChannel)
           
 Integer getLogicalChannelSamplesPerPixel(int idxImage, int idxLogicalChannel)
           
 String getLogicalChannelSecondaryEmissionFilter(int idxImage, int idxLogicalChannel)
           
 String getLogicalChannelSecondaryExcitationFilter(int idxImage, int idxLogicalChannel)
           
 String getMaskHeight(int idxImage, int idxROI, int idxShape)
           
 String getMaskID(int idxImage, int idxROI, int idxShape)
           
 Boolean getMaskPixelsBigEndian(int idxImage, int idxROI, int idxShape)
           
 byte[] getMaskPixelsBinData(int idxImage, int idxROI, int idxShape)
           
 String getMaskPixelsExtendedPixelType(int idxImage, int idxROI, int idxShape)
           
 String getMaskPixelsID(int idxImage, int idxROI, int idxShape)
           
 Integer getMaskPixelsSizeX(int idxImage, int idxROI, int idxShape)
           
 Integer getMaskPixelsSizeY(int idxImage, int idxROI, int idxShape)
           
 String getMaskTransform(int idxImage, int idxROI, int idxShape)
           
 String getMaskWidth(int idxImage, int idxROI, int idxShape)
           
 String getMaskX(int idxImage, int idxROI, int idxShape)
           
 String getMaskY(int idxImage, int idxROI, int idxShape)
           
 int getMicrobeamManipulationCount(int idxImage)
           
 String getMicrobeamManipulationExperimenterRef(int idxImage, int idxMicrobeamManipulation)
           
 String getMicrobeamManipulationID(int idxImage, int idxMicrobeamManipulation)
           
 int getMicrobeamManipulationRefCount(int idxExperiment)
           
 String getMicrobeamManipulationRefID(int idxExperiment, int idxMicrobeamManipulationRef)
           
 String getMicrobeamManipulationType(int idxImage, int idxMicrobeamManipulation)
           
 String getMicroscopeID(int idxInstrument)
           
 String getMicroscopeManufacturer(int idxInstrument)
           
 String getMicroscopeModel(int idxInstrument)
           
 String getMicroscopeSerialNumber(int idxInstrument)
           
 String getMicroscopeType(int idxInstrument)
           
 Float getObjectiveCalibratedMagnification(int idxInstrument, int idxObjective)
           
 String getObjectiveCorrection(int idxInstrument, int idxObjective)
           
 int getObjectiveCount(int idxInstrument)
           
 String getObjectiveID(int idxInstrument, int idxObjective)
           
 String getObjectiveImmersion(int idxInstrument, int idxObjective)
           
 Boolean getObjectiveIris(int idxInstrument, int idxObjective)
           
 Float getObjectiveLensNA(int idxInstrument, int idxObjective)
           
 String getObjectiveManufacturer(int idxInstrument, int idxObjective)
           
 String getObjectiveModel(int idxInstrument, int idxObjective)
           
 Integer getObjectiveNominalMagnification(int idxInstrument, int idxObjective)
           
 String getObjectiveSerialNumber(int idxInstrument, int idxObjective)
           
 Float getObjectiveSettingsCorrectionCollar(int imageIndex)
           
 String getObjectiveSettingsMedium(int imageIndex)
           
 String getObjectiveSettingsObjective(int imageIndex)
           
 Float getObjectiveSettingsRefractiveIndex(int imageIndex)
           
 Float getObjectiveWorkingDistance(int idxInstrument, int idxObjective)
           
 String getOTFBinaryFile(int idxInstrument, int idxOTF)
           
 int getOTFCount(int idxInstrument)
           
 String getOTFID(int idxInstrument, int idxOTF)
           
 String getOTFObjective(int idxInstrument, int idxOTF)
           
 Boolean getOTFOpticalAxisAveraged(int idxInstrument, int idxOTF)
           
 String getOTFPixelType(int idxInstrument, int idxOTF)
           
 Integer getOTFSizeX(int idxInstrument, int idxOTF)
           
 Integer getOTFSizeY(int idxInstrument, int idxOTF)
           
 String getPathD(int imageIndex, int roiIndex, int shapeIndex)
           
 String getPathID(int imageIndex, int roiIndex, int shapeIndex)
           
 Boolean getPixelsBigEndian(int idxImage, int idxPixels)
           
 int getPixelsCount(int idxImage)
           
 String getPixelsDimensionOrder(int idxImage, int idxPixels)
           
 String getPixelsID(int idxImage, int idxPixels)
           
 String getPixelsPixelType(int idxImage, int idxPixels)
           
 Integer getPixelsSizeC(int idxImage, int idxPixels)
           
 Integer getPixelsSizeT(int idxImage, int idxPixels)
           
 Integer getPixelsSizeX(int idxImage, int idxPixels)
           
 Integer getPixelsSizeY(int idxImage, int idxPixels)
           
 Integer getPixelsSizeZ(int idxImage, int idxPixels)
           
 int getPlaneCount(int idxImage, int idxPixels)
           
 String getPlaneHashSHA1(int idxImage, int idxPixels, int idxPlane)
           
 String getPlaneID(int idxImage, int idxPixels, int idxPlane)
           
 Integer getPlaneTheC(int idxImage, int idxPixels, int idxPlane)
           
 Integer getPlaneTheT(int idxImage, int idxPixels, int idxPlane)
           
 Integer getPlaneTheZ(int idxImage, int idxPixels, int idxPlane)
           
 Float getPlaneTimingDeltaT(int idxImage, int idxPixels, int idxPlane)
           
 Float getPlaneTimingExposureTime(int idxImage, int idxPixels, int idxPlane)
           
 String getPlateColumnNamingConvention(int idxPlate)
           
 int getPlateCount()
           
 String getPlateDescription(int idxPlate)
           
 String getPlateExternalIdentifier(int idxPlate)
           
 String getPlateID(int idxPlate)
           
 String getPlateName(int idxPlate)
           
 int getPlateRefCount(int idxScreen)
           
 String getPlateRefID(int idxScreen, int idxPlateRef)
           
 Integer getPlateRefSample(int idxScreen, int idxPlateRef)
           
 String getPlateRefWell(int idxScreen, int idxPlateRef)
           
 String getPlateRowNamingConvention(int idxPlate)
           
 String getPlateStatus(int idxPlate)
           
 Double getPlateWellOriginX(int idxPlate)
           
 Double getPlateWellOriginY(int idxPlate)
           
 String getPointCx(int idxImage, int idxROI, int idxShape)
           
 String getPointCy(int idxImage, int idxROI, int idxShape)
           
 String getPointID(int idxImage, int idxROI, int idxShape)
           
 String getPointR(int idxImage, int idxROI, int idxShape)
           
 String getPointTransform(int idxImage, int idxROI, int idxShape)
           
 String getPolygonID(int idxImage, int idxROI, int idxShape)
           
 String getPolygonPoints(int idxImage, int idxROI, int idxShape)
           
 String getPolygonTransform(int idxImage, int idxROI, int idxShape)
           
 String getPolylineID(int idxImage, int idxROI, int idxShape)
           
 String getPolylinePoints(int idxImage, int idxROI, int idxShape)
           
 String getPolylineTransform(int idxImage, int idxROI, int idxShape)
           
 int getProjectCount()
           
 String getProjectDescription(int idxProject)
           
 String getProjectExperimenterRef(int idxProject)
           
 String getProjectGroupRef(int idxProject)
           
 String getProjectID(int idxProject)
           
 String getProjectName(int idxProject)
           
 int getProjectRefCount(int idxDataset)
           
 String getProjectRefID(int idxDataset, int idxProjectRef)
           
 String getPumpLightSource(int idxInstrument, int idxLightSource)
           
 int getReagentCount(int idxScreen)
           
 String getReagentDescription(int idxScreen, int idxReagent)
           
 String getReagentID(int idxScreen, int idxReagent)
           
 String getReagentName(int idxScreen, int idxReagent)
           
 String getReagentReagentIdentifier(int idxScreen, int idxReagent)
           
 String getRectHeight(int idxImage, int idxROI, int idxShape)
           
 String getRectID(int idxImage, int idxROI, int idxShape)
           
 String getRectTransform(int idxImage, int idxROI, int idxShape)
           
 String getRectWidth(int idxImage, int idxROI, int idxShape)
           
 String getRectX(int idxImage, int idxROI, int idxShape)
           
 String getRectY(int idxImage, int idxROI, int idxShape)
           
 int getRegionCount(int idxImage)
           
 String getRegionID(int idxImage, int idxRegion)
           
 String getRegionName(int idxImage, int idxRegion)
           
 String getRegionTag(int idxImage, int idxRegion)
           
 int getROICount(int idxImage)
           
 String getROIID(int idxImage, int idxROI)
           
 int getRoiLinkCount(int arg0, int arg1)
           
 String getRoiLinkDirection(int arg0, int arg1, int arg2)
           
 String getRoiLinkName(int arg0, int arg1, int arg2)
           
 String getRoiLinkRef(int arg0, int arg1, int arg2)
           
 int getROIRefCount(int idxImage, int idxMicrobeamManipulation)
           
 String getROIRefID(int idxImage, int idxMicrobeamManipulation, int idxROIRef)
           
 Integer getROIT0(int idxImage, int idxROI)
           
 Integer getROIT1(int idxImage, int idxROI)
           
 Integer getROIX0(int idxImage, int idxROI)
           
 Integer getROIX1(int idxImage, int idxROI)
           
 Integer getROIY0(int idxImage, int idxROI)
           
 Integer getROIY1(int idxImage, int idxROI)
           
 Integer getROIZ0(int idxImage, int idxROI)
           
 Integer getROIZ1(int idxImage, int idxROI)
           
 int getScreenAcquisitionCount(int idxScreen)
           
 String getScreenAcquisitionEndTime(int idxScreen, int idxScreenAcquisition)
           
 String getScreenAcquisitionID(int idxScreen, int idxScreenAcquisition)
           
 String getScreenAcquisitionStartTime(int idxScreen, int idxScreenAcquisition)
           
 int getScreenCount()
           
 String getScreenDescription(int idxScreen)
           
 String getScreenExtern(int idxScreen)
           
 String getScreenID(int idxScreen)
           
 String getScreenName(int idxScreen)
           
 String getScreenProtocolDescription(int idxScreen)
           
 String getScreenProtocolIdentifier(int idxScreen)
           
 String getScreenReagentSetDescription(int idxScreen)
           
 String getScreenReagentSetIdentifier(int idxScreen)
           
 int getScreenRefCount(int idxPlate)
           
 String getScreenRefID(int idxPlate, int idxScreenRef)
           
 String getScreenType(int idxScreen)
           
 String getShapeBaselineShift(int idxImage, int idxROI, int idxShape)
           
 int getShapeCount(int idxImage, int idxROI)
           
 String getShapeDirection(int idxImage, int idxROI, int idxShape)
           
 String getShapeFillColor(int idxImage, int idxROI, int idxShape)
           
 String getShapeFillOpacity(int idxImage, int idxROI, int idxShape)
           
 String getShapeFillRule(int idxImage, int idxROI, int idxShape)
           
 String getShapeFontFamily(int idxImage, int idxROI, int idxShape)
           
 Integer getShapeFontSize(int idxImage, int idxROI, int idxShape)
           
 String getShapeFontStretch(int idxImage, int idxROI, int idxShape)
           
 String getShapeFontStyle(int idxImage, int idxROI, int idxShape)
           
 String getShapeFontVariant(int idxImage, int idxROI, int idxShape)
           
 String getShapeFontWeight(int idxImage, int idxROI, int idxShape)
           
 String getShapeG(int idxImage, int idxROI, int idxShape)
           
 Integer getShapeGlyphOrientationVertical(int idxImage, int idxROI, int idxShape)
           
 String getShapeID(int idxImage, int idxROI, int idxShape)
           
 Boolean getShapeLocked(int idxImage, int idxROI, int idxShape)
           
 String getShapeStrokeAttribute(int idxImage, int idxROI, int idxShape)
           
 String getShapeStrokeColor(int idxImage, int idxROI, int idxShape)
           
 String getShapeStrokeDashArray(int idxImage, int idxROI, int idxShape)
           
 String getShapeStrokeLineCap(int idxImage, int idxROI, int idxShape)
           
 String getShapeStrokeLineJoin(int idxImage, int idxROI, int idxShape)
           
 Integer getShapeStrokeMiterLimit(int idxImage, int idxROI, int idxShape)
           
 Float getShapeStrokeOpacity(int idxImage, int idxROI, int idxShape)
           
 Integer getShapeStrokeWidth(int idxImage, int idxROI, int idxShape)
           
 String getShapeText(int idxImage, int idxROI, int idxShape)
           
 String getShapeTextAnchor(int idxImage, int idxROI, int idxShape)
           
 String getShapeTextDecoration(int idxImage, int idxROI, int idxShape)
           
 String getShapeTextFill(int idxImage, int idxROI, int idxShape)
           
 String getShapeTextStroke(int idxImage, int idxROI, int idxShape)
           
 Integer getShapeTheT(int idxImage, int idxROI, int idxShape)
           
 Integer getShapeTheZ(int idxImage, int idxROI, int idxShape)
           
 String getShapeVectorEffect(int idxImage, int idxROI, int idxShape)
           
 Boolean getShapeVisibility(int idxImage, int idxROI, int idxShape)
           
 String getShapeWritingMode(int idxImage, int idxROI, int idxShape)
           
 String getStageLabelName(int idxImage)
           
 Float getStageLabelX(int idxImage)
           
 Float getStageLabelY(int idxImage)
           
 Float getStageLabelZ(int idxImage)
           
 Float getStagePositionPositionX(int idxImage, int idxPixels, int idxPlane)
           
 Float getStagePositionPositionY(int idxImage, int idxPixels, int idxPlane)
           
 Float getStagePositionPositionZ(int idxImage, int idxPixels, int idxPlane)
           
 String getThumbnailHref(int idxImage)
           
 String getThumbnailID(int idxImage)
           
 String getThumbnailMIMEtype(int idxImage)
           
 int getTiffDataCount(int idxImage, int idxPixels)
           
 String getTiffDataFileName(int idxImage, int idxPixels, int idxTiffData)
           
 Integer getTiffDataFirstC(int idxImage, int idxPixels, int idxTiffData)
           
 Integer getTiffDataFirstT(int idxImage, int idxPixels, int idxTiffData)
           
 Integer getTiffDataFirstZ(int idxImage, int idxPixels, int idxTiffData)
           
 Integer getTiffDataIFD(int idxImage, int idxPixels, int idxTiffData)
           
 Integer getTiffDataNumPlanes(int idxImage, int idxPixels, int idxTiffData)
           
 String getTiffDataUUID(int idxImage, int idxPixels, int idxTiffData)
           
 Integer getTransmittanceRangeCutIn(int idxInstrument, int idxFilter)
           
 Integer getTransmittanceRangeCutInTolerance(int idxInstrument, int idxFilter)
           
 Integer getTransmittanceRangeCutOut(int idxInstrument, int idxFilter)
           
 Integer getTransmittanceRangeCutOutTolerance(int idxInstrument, int idxFilter)
           
 Integer getTransmittanceRangeTransmittance(int idxInstrument, int idxFilter)
           
 String getUUID()
           
 Integer getWellColumn(int idxPlate, int idxWell)
           
 int getWellCount(int idxPlate)
           
 String getWellExternalDescription(int idxPlate, int idxWell)
           
 String getWellExternalIdentifier(int idxPlate, int idxWell)
           
 String getWellID(int idxPlate, int idxWell)
           
 String getWellReagent(int idxPlate, int idxWell)
           
 Integer getWellRow(int idxPlate, int idxWell)
           
 int getWellSampleCount(int idxPlate, int idxWell)
           
 String getWellSampleID(int idxPlate, int idxWell, int idxWellSample)
           
 String getWellSampleImageRef(int idxPlate, int idxWell, int idxWellSample)
           
 Integer getWellSampleIndex(int idxPlate, int idxWell, int idxWellSample)
           
 Float getWellSamplePosX(int idxPlate, int idxWell, int idxWellSample)
           
 Float getWellSamplePosY(int idxPlate, int idxWell, int idxWellSample)
           
 int getWellSampleRefCount(int idxScreen, int idxScreenAcquisition)
           
 String getWellSampleRefID(int idxScreen, int idxScreenAcquisition, int idxWellSampleRef)
           
 Integer getWellSampleTimepoint(int idxPlate, int idxWell, int idxWellSample)
           
 String getWellType(int idxPlate, int idxWell)
           
 String handleLsid(omero.model.IObject obj)
           
 void initialize(org.hibernate.Session session)
           
 int sizeImages()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

OmeroMetadata

public OmeroMetadata(DatabaseIdentity db)
Method Detail

addImage

public void addImage(omero.model.Image image)

getImage

public omero.model.Image getImage(int i)

sizeImages

public int sizeImages()

handleLsid

public String handleLsid(omero.model.IObject obj)

initialize

public void initialize(org.hibernate.Session session)

getUUID

public String getUUID()
Specified by:
getUUID in interface loci.formats.meta.MetadataRetrieve

getDatasetCount

public int getDatasetCount()
Specified by:
getDatasetCount in interface loci.formats.meta.MetadataRetrieve

getScreenRefCount

public int getScreenRefCount(int idxPlate)
Specified by:
getScreenRefCount in interface loci.formats.meta.MetadataRetrieve

getProjectRefCount

public int getProjectRefCount(int idxDataset)
Specified by:
getProjectRefCount in interface loci.formats.meta.MetadataRetrieve

getProjectCount

public int getProjectCount()
Specified by:
getProjectCount in interface loci.formats.meta.MetadataRetrieve

getGroupCount

public int getGroupCount()
Specified by:
getGroupCount in interface loci.formats.meta.MetadataRetrieve

getPixelsCount

public int getPixelsCount(int idxImage)
Specified by:
getPixelsCount in interface loci.formats.meta.MetadataRetrieve

getGroupRefCount

public int getGroupRefCount(int idxExperimenter)
Specified by:
getGroupRefCount in interface loci.formats.meta.MetadataRetrieve

getPlateRefCount

public int getPlateRefCount(int idxScreen)
Specified by:
getPlateRefCount in interface loci.formats.meta.MetadataRetrieve

getWellSampleCount

public int getWellSampleCount(int idxPlate,
                              int idxWell)
Specified by:
getWellSampleCount in interface loci.formats.meta.MetadataRetrieve

getRegionCount

public int getRegionCount(int idxImage)
Specified by:
getRegionCount in interface loci.formats.meta.MetadataRetrieve

getWellSampleRefCount

public int getWellSampleRefCount(int idxScreen,
                                 int idxScreenAcquisition)
Specified by:
getWellSampleRefCount in interface loci.formats.meta.MetadataRetrieve

getPlateCount

public int getPlateCount()
Specified by:
getPlateCount in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelCount

public int getLogicalChannelCount(int idxImage)
Specified by:
getLogicalChannelCount in interface loci.formats.meta.MetadataRetrieve

getDichroicCount

public int getDichroicCount(int idxInstrument)
Specified by:
getDichroicCount in interface loci.formats.meta.MetadataRetrieve

getReagentCount

public int getReagentCount(int idxScreen)
Specified by:
getReagentCount in interface loci.formats.meta.MetadataRetrieve

getROIRefCount

public int getROIRefCount(int idxImage,
                          int idxMicrobeamManipulation)
Specified by:
getROIRefCount in interface loci.formats.meta.MetadataRetrieve

getInstrumentCount

public int getInstrumentCount()
Specified by:
getInstrumentCount in interface loci.formats.meta.MetadataRetrieve

getExperimenterCount

public int getExperimenterCount()
Specified by:
getExperimenterCount in interface loci.formats.meta.MetadataRetrieve

getDetectorCount

public int getDetectorCount(int idxInstrument)
Specified by:
getDetectorCount in interface loci.formats.meta.MetadataRetrieve

getLightSourceCount

public int getLightSourceCount(int idxInstrument)
Specified by:
getLightSourceCount in interface loci.formats.meta.MetadataRetrieve

getExperimentCount

public int getExperimentCount()
Specified by:
getExperimentCount in interface loci.formats.meta.MetadataRetrieve

getScreenAcquisitionCount

public int getScreenAcquisitionCount(int idxScreen)
Specified by:
getScreenAcquisitionCount in interface loci.formats.meta.MetadataRetrieve

getChannelComponentCount

public int getChannelComponentCount(int idxImage,
                                    int idxLogicalChannel)
Specified by:
getChannelComponentCount in interface loci.formats.meta.MetadataRetrieve

getScreenCount

public int getScreenCount()
Specified by:
getScreenCount in interface loci.formats.meta.MetadataRetrieve

getObjectiveCount

public int getObjectiveCount(int idxInstrument)
Specified by:
getObjectiveCount in interface loci.formats.meta.MetadataRetrieve

getDatasetRefCount

public int getDatasetRefCount(int idxImage)
Specified by:
getDatasetRefCount in interface loci.formats.meta.MetadataRetrieve

getMicrobeamManipulationRefCount

public int getMicrobeamManipulationRefCount(int idxExperiment)
Specified by:
getMicrobeamManipulationRefCount in interface loci.formats.meta.MetadataRetrieve

getLightSourceRefCount

public int getLightSourceRefCount(int idxImage,
                                  int idxMicrobeamManipulation)
Specified by:
getLightSourceRefCount in interface loci.formats.meta.MetadataRetrieve

getFilterCount

public int getFilterCount(int idxInstrument)
Specified by:
getFilterCount in interface loci.formats.meta.MetadataRetrieve

getMicrobeamManipulationCount

public int getMicrobeamManipulationCount(int idxImage)
Specified by:
getMicrobeamManipulationCount in interface loci.formats.meta.MetadataRetrieve

getImageCount

public int getImageCount()
Specified by:
getImageCount in interface loci.formats.meta.MetadataRetrieve

getROICount

public int getROICount(int idxImage)
Specified by:
getROICount in interface loci.formats.meta.MetadataRetrieve

getShapeCount

public int getShapeCount(int idxImage,
                         int idxROI)
Specified by:
getShapeCount in interface loci.formats.meta.MetadataRetrieve

getTiffDataCount

public int getTiffDataCount(int idxImage,
                            int idxPixels)
Specified by:
getTiffDataCount in interface loci.formats.meta.MetadataRetrieve

getFilterSetCount

public int getFilterSetCount(int idxInstrument)
Specified by:
getFilterSetCount in interface loci.formats.meta.MetadataRetrieve

getWellCount

public int getWellCount(int idxPlate)
Specified by:
getWellCount in interface loci.formats.meta.MetadataRetrieve

getPlaneCount

public int getPlaneCount(int idxImage,
                         int idxPixels)
Specified by:
getPlaneCount in interface loci.formats.meta.MetadataRetrieve

getOTFCount

public int getOTFCount(int idxInstrument)
Specified by:
getOTFCount in interface loci.formats.meta.MetadataRetrieve

getMaskPixelsExtendedPixelType

public String getMaskPixelsExtendedPixelType(int idxImage,
                                             int idxROI,
                                             int idxShape)
Specified by:
getMaskPixelsExtendedPixelType in interface loci.formats.meta.MetadataRetrieve

getMaskPixelsSizeX

public Integer getMaskPixelsSizeX(int idxImage,
                                  int idxROI,
                                  int idxShape)
Specified by:
getMaskPixelsSizeX in interface loci.formats.meta.MetadataRetrieve

getMaskPixelsSizeY

public Integer getMaskPixelsSizeY(int idxImage,
                                  int idxROI,
                                  int idxShape)
Specified by:
getMaskPixelsSizeY in interface loci.formats.meta.MetadataRetrieve

getMaskPixelsBigEndian

public Boolean getMaskPixelsBigEndian(int idxImage,
                                      int idxROI,
                                      int idxShape)
Specified by:
getMaskPixelsBigEndian in interface loci.formats.meta.MetadataRetrieve

getMaskPixelsBinData

public byte[] getMaskPixelsBinData(int idxImage,
                                   int idxROI,
                                   int idxShape)
Specified by:
getMaskPixelsBinData in interface loci.formats.meta.MetadataRetrieve

getMaskPixelsID

public String getMaskPixelsID(int idxImage,
                              int idxROI,
                              int idxShape)
Specified by:
getMaskPixelsID in interface loci.formats.meta.MetadataRetrieve

getDatasetLocked

public Boolean getDatasetLocked(int idxDataset)
Specified by:
getDatasetLocked in interface loci.formats.meta.MetadataRetrieve

getDatasetDescription

public String getDatasetDescription(int idxDataset)
Specified by:
getDatasetDescription in interface loci.formats.meta.MetadataRetrieve

getDatasetExperimenterRef

public String getDatasetExperimenterRef(int idxDataset)
Specified by:
getDatasetExperimenterRef in interface loci.formats.meta.MetadataRetrieve

getDatasetGroupRef

public String getDatasetGroupRef(int idxDataset)
Specified by:
getDatasetGroupRef in interface loci.formats.meta.MetadataRetrieve

getDatasetID

public String getDatasetID(int idxDataset)
Specified by:
getDatasetID in interface loci.formats.meta.MetadataRetrieve

getDatasetName

public String getDatasetName(int idxDataset)
Specified by:
getDatasetName in interface loci.formats.meta.MetadataRetrieve

getPumpLightSource

public String getPumpLightSource(int idxInstrument,
                                 int idxLightSource)
Specified by:
getPumpLightSource in interface loci.formats.meta.MetadataRetrieve

getScreenRefID

public String getScreenRefID(int idxPlate,
                             int idxScreenRef)
Specified by:
getScreenRefID in interface loci.formats.meta.MetadataRetrieve

getProjectRefID

public String getProjectRefID(int idxDataset,
                              int idxProjectRef)
Specified by:
getProjectRefID in interface loci.formats.meta.MetadataRetrieve

getProjectExperimenterRef

public String getProjectExperimenterRef(int idxProject)
Specified by:
getProjectExperimenterRef in interface loci.formats.meta.MetadataRetrieve

getProjectID

public String getProjectID(int idxProject)
Specified by:
getProjectID in interface loci.formats.meta.MetadataRetrieve

getProjectGroupRef

public String getProjectGroupRef(int idxProject)
Specified by:
getProjectGroupRef in interface loci.formats.meta.MetadataRetrieve

getProjectName

public String getProjectName(int idxProject)
Specified by:
getProjectName in interface loci.formats.meta.MetadataRetrieve

getProjectDescription

public String getProjectDescription(int idxProject)
Specified by:
getProjectDescription in interface loci.formats.meta.MetadataRetrieve

getGroupName

public String getGroupName(int idxGroup)
Specified by:
getGroupName in interface loci.formats.meta.MetadataRetrieve

getPixelsSizeT

public Integer getPixelsSizeT(int idxImage,
                              int idxPixels)
Specified by:
getPixelsSizeT in interface loci.formats.meta.MetadataRetrieve

getPixelsDimensionOrder

public String getPixelsDimensionOrder(int idxImage,
                                      int idxPixels)
Specified by:
getPixelsDimensionOrder in interface loci.formats.meta.MetadataRetrieve

getPixelsPixelType

public String getPixelsPixelType(int idxImage,
                                 int idxPixels)
Specified by:
getPixelsPixelType in interface loci.formats.meta.MetadataRetrieve

getPixelsSizeX

public Integer getPixelsSizeX(int idxImage,
                              int idxPixels)
Specified by:
getPixelsSizeX in interface loci.formats.meta.MetadataRetrieve

getPixelsSizeY

public Integer getPixelsSizeY(int idxImage,
                              int idxPixels)
Specified by:
getPixelsSizeY in interface loci.formats.meta.MetadataRetrieve

getPixelsSizeZ

public Integer getPixelsSizeZ(int idxImage,
                              int idxPixels)
Specified by:
getPixelsSizeZ in interface loci.formats.meta.MetadataRetrieve

getPixelsBigEndian

public Boolean getPixelsBigEndian(int idxImage,
                                  int idxPixels)
Specified by:
getPixelsBigEndian in interface loci.formats.meta.MetadataRetrieve

getPixelsSizeC

public Integer getPixelsSizeC(int idxImage,
                              int idxPixels)
Specified by:
getPixelsSizeC in interface loci.formats.meta.MetadataRetrieve

getPixelsID

public String getPixelsID(int idxImage,
                          int idxPixels)
Specified by:
getPixelsID in interface loci.formats.meta.MetadataRetrieve

getPlateRefSample

public Integer getPlateRefSample(int idxScreen,
                                 int idxPlateRef)
Specified by:
getPlateRefSample in interface loci.formats.meta.MetadataRetrieve

getPlateRefWell

public String getPlateRefWell(int idxScreen,
                              int idxPlateRef)
Specified by:
getPlateRefWell in interface loci.formats.meta.MetadataRetrieve

getPlateRefID

public String getPlateRefID(int idxScreen,
                            int idxPlateRef)
Specified by:
getPlateRefID in interface loci.formats.meta.MetadataRetrieve

getWellSampleIndex

public Integer getWellSampleIndex(int idxPlate,
                                  int idxWell,
                                  int idxWellSample)
Specified by:
getWellSampleIndex in interface loci.formats.meta.MetadataRetrieve

getWellSampleImageRef

public String getWellSampleImageRef(int idxPlate,
                                    int idxWell,
                                    int idxWellSample)
Specified by:
getWellSampleImageRef in interface loci.formats.meta.MetadataRetrieve

getWellSampleTimepoint

public Integer getWellSampleTimepoint(int idxPlate,
                                      int idxWell,
                                      int idxWellSample)
Specified by:
getWellSampleTimepoint in interface loci.formats.meta.MetadataRetrieve

getWellSamplePosX

public Float getWellSamplePosX(int idxPlate,
                               int idxWell,
                               int idxWellSample)
Specified by:
getWellSamplePosX in interface loci.formats.meta.MetadataRetrieve

getWellSamplePosY

public Float getWellSamplePosY(int idxPlate,
                               int idxWell,
                               int idxWellSample)
Specified by:
getWellSamplePosY in interface loci.formats.meta.MetadataRetrieve

getWellSampleID

public String getWellSampleID(int idxPlate,
                              int idxWell,
                              int idxWellSample)
Specified by:
getWellSampleID in interface loci.formats.meta.MetadataRetrieve

getPolylinePoints

public String getPolylinePoints(int idxImage,
                                int idxROI,
                                int idxShape)
Specified by:
getPolylinePoints in interface loci.formats.meta.MetadataRetrieve

getPolylineID

public String getPolylineID(int idxImage,
                            int idxROI,
                            int idxShape)
Specified by:
getPolylineID in interface loci.formats.meta.MetadataRetrieve

getPolylineTransform

public String getPolylineTransform(int idxImage,
                                   int idxROI,
                                   int idxShape)
Specified by:
getPolylineTransform in interface loci.formats.meta.MetadataRetrieve

getRegionTag

public String getRegionTag(int idxImage,
                           int idxRegion)
Specified by:
getRegionTag in interface loci.formats.meta.MetadataRetrieve

getRegionName

public String getRegionName(int idxImage,
                            int idxRegion)
Specified by:
getRegionName in interface loci.formats.meta.MetadataRetrieve

getRegionID

public String getRegionID(int idxImage,
                          int idxRegion)
Specified by:
getRegionID in interface loci.formats.meta.MetadataRetrieve

getStagePositionPositionZ

public Float getStagePositionPositionZ(int idxImage,
                                       int idxPixels,
                                       int idxPlane)
Specified by:
getStagePositionPositionZ in interface loci.formats.meta.MetadataRetrieve

getStagePositionPositionX

public Float getStagePositionPositionX(int idxImage,
                                       int idxPixels,
                                       int idxPlane)
Specified by:
getStagePositionPositionX in interface loci.formats.meta.MetadataRetrieve

getStagePositionPositionY

public Float getStagePositionPositionY(int idxImage,
                                       int idxPixels,
                                       int idxPlane)
Specified by:
getStagePositionPositionY in interface loci.formats.meta.MetadataRetrieve

getWellSampleRefID

public String getWellSampleRefID(int idxScreen,
                                 int idxScreenAcquisition,
                                 int idxWellSampleRef)
Specified by:
getWellSampleRefID in interface loci.formats.meta.MetadataRetrieve

getPlateStatus

public String getPlateStatus(int idxPlate)
Specified by:
getPlateStatus in interface loci.formats.meta.MetadataRetrieve

getPlateRowNamingConvention

public String getPlateRowNamingConvention(int idxPlate)
Specified by:
getPlateRowNamingConvention in interface loci.formats.meta.MetadataRetrieve

getPlateDescription

public String getPlateDescription(int idxPlate)
Specified by:
getPlateDescription in interface loci.formats.meta.MetadataRetrieve

getPlateExternalIdentifier

public String getPlateExternalIdentifier(int idxPlate)
Specified by:
getPlateExternalIdentifier in interface loci.formats.meta.MetadataRetrieve

getPlateColumnNamingConvention

public String getPlateColumnNamingConvention(int idxPlate)
Specified by:
getPlateColumnNamingConvention in interface loci.formats.meta.MetadataRetrieve

getPlateWellOriginY

public Double getPlateWellOriginY(int idxPlate)
Specified by:
getPlateWellOriginY in interface loci.formats.meta.MetadataRetrieve

getPlateWellOriginX

public Double getPlateWellOriginX(int idxPlate)
Specified by:
getPlateWellOriginX in interface loci.formats.meta.MetadataRetrieve

getPlateID

public String getPlateID(int idxPlate)
Specified by:
getPlateID in interface loci.formats.meta.MetadataRetrieve

getPlateName

public String getPlateName(int idxPlate)
Specified by:
getPlateName in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelLightSource

public String getLogicalChannelLightSource(int idxImage,
                                           int idxLogicalChannel)
Specified by:
getLogicalChannelLightSource in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelSecondaryEmissionFilter

public String getLogicalChannelSecondaryEmissionFilter(int idxImage,
                                                       int idxLogicalChannel)
Specified by:
getLogicalChannelSecondaryEmissionFilter in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelPockelCellSetting

public Integer getLogicalChannelPockelCellSetting(int idxImage,
                                                  int idxLogicalChannel)
Specified by:
getLogicalChannelPockelCellSetting in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelPinholeSize

public Float getLogicalChannelPinholeSize(int idxImage,
                                          int idxLogicalChannel)
Specified by:
getLogicalChannelPinholeSize in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelSecondaryExcitationFilter

public String getLogicalChannelSecondaryExcitationFilter(int idxImage,
                                                         int idxLogicalChannel)
Specified by:
getLogicalChannelSecondaryExcitationFilter in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelPhotometricInterpretation

public String getLogicalChannelPhotometricInterpretation(int idxImage,
                                                         int idxLogicalChannel)
Specified by:
getLogicalChannelPhotometricInterpretation in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelMode

public String getLogicalChannelMode(int idxImage,
                                    int idxLogicalChannel)
Specified by:
getLogicalChannelMode in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelContrastMethod

public String getLogicalChannelContrastMethod(int idxImage,
                                              int idxLogicalChannel)
Specified by:
getLogicalChannelContrastMethod in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelIlluminationType

public String getLogicalChannelIlluminationType(int idxImage,
                                                int idxLogicalChannel)
Specified by:
getLogicalChannelIlluminationType in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelOTF

public String getLogicalChannelOTF(int idxImage,
                                   int idxLogicalChannel)
Specified by:
getLogicalChannelOTF in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelID

public String getLogicalChannelID(int idxImage,
                                  int idxLogicalChannel)
Specified by:
getLogicalChannelID in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelFluor

public String getLogicalChannelFluor(int idxImage,
                                     int idxLogicalChannel)
Specified by:
getLogicalChannelFluor in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelEmWave

public Integer getLogicalChannelEmWave(int idxImage,
                                       int idxLogicalChannel)
Specified by:
getLogicalChannelEmWave in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelNdFilter

public Float getLogicalChannelNdFilter(int idxImage,
                                       int idxLogicalChannel)
Specified by:
getLogicalChannelNdFilter in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelName

public String getLogicalChannelName(int idxImage,
                                    int idxLogicalChannel)
Specified by:
getLogicalChannelName in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelDetector

public String getLogicalChannelDetector(int idxImage,
                                        int idxLogicalChannel)
Specified by:
getLogicalChannelDetector in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelSamplesPerPixel

public Integer getLogicalChannelSamplesPerPixel(int idxImage,
                                                int idxLogicalChannel)
Specified by:
getLogicalChannelSamplesPerPixel in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelExWave

public Integer getLogicalChannelExWave(int idxImage,
                                       int idxLogicalChannel)
Specified by:
getLogicalChannelExWave in interface loci.formats.meta.MetadataRetrieve

getLogicalChannelFilterSet

public String getLogicalChannelFilterSet(int idxImage,
                                         int idxLogicalChannel)
Specified by:
getLogicalChannelFilterSet in interface loci.formats.meta.MetadataRetrieve

getDichroicModel

public String getDichroicModel(int idxInstrument,
                               int idxDichroic)
Specified by:
getDichroicModel in interface loci.formats.meta.MetadataRetrieve

getDichroicLotNumber

public String getDichroicLotNumber(int idxInstrument,
                                   int idxDichroic)
Specified by:
getDichroicLotNumber in interface loci.formats.meta.MetadataRetrieve

getDichroicManufacturer

public String getDichroicManufacturer(int idxInstrument,
                                      int idxDichroic)
Specified by:
getDichroicManufacturer in interface loci.formats.meta.MetadataRetrieve

getReagentReagentIdentifier

public String getReagentReagentIdentifier(int idxScreen,
                                          int idxReagent)
Specified by:
getReagentReagentIdentifier in interface loci.formats.meta.MetadataRetrieve

getReagentDescription

public String getReagentDescription(int idxScreen,
                                    int idxReagent)
Specified by:
getReagentDescription in interface loci.formats.meta.MetadataRetrieve

getReagentID

public String getReagentID(int idxScreen,
                           int idxReagent)
Specified by:
getReagentID in interface loci.formats.meta.MetadataRetrieve

getReagentName

public String getReagentName(int idxScreen,
                             int idxReagent)
Specified by:
getReagentName in interface loci.formats.meta.MetadataRetrieve

getROIRefID

public String getROIRefID(int idxImage,
                          int idxMicrobeamManipulation,
                          int idxROIRef)
Specified by:
getROIRefID in interface loci.formats.meta.MetadataRetrieve

getInstrumentID

public String getInstrumentID(int idxInstrument)
Specified by:
getInstrumentID in interface loci.formats.meta.MetadataRetrieve

getExperimenterEmail

public String getExperimenterEmail(int idxExperimenter)
Specified by:
getExperimenterEmail in interface loci.formats.meta.MetadataRetrieve

getExperimenterOMEName

public String getExperimenterOMEName(int idxExperimenter)
Specified by:
getExperimenterOMEName in interface loci.formats.meta.MetadataRetrieve

getExperimenterFirstName

public String getExperimenterFirstName(int idxExperimenter)
Specified by:
getExperimenterFirstName in interface loci.formats.meta.MetadataRetrieve

getExperimenterLastName

public String getExperimenterLastName(int idxExperimenter)
Specified by:
getExperimenterLastName in interface loci.formats.meta.MetadataRetrieve

getExperimenterInstitution

public String getExperimenterInstitution(int idxExperimenter)
Specified by:
getExperimenterInstitution in interface loci.formats.meta.MetadataRetrieve

getExperimenterID

public String getExperimenterID(int idxExperimenter)
Specified by:
getExperimenterID in interface loci.formats.meta.MetadataRetrieve

getDetectorGain

public Float getDetectorGain(int idxInstrument,
                             int idxDetector)
Specified by:
getDetectorGain in interface loci.formats.meta.MetadataRetrieve

getDetectorSerialNumber

public String getDetectorSerialNumber(int idxInstrument,
                                      int idxDetector)
Specified by:
getDetectorSerialNumber in interface loci.formats.meta.MetadataRetrieve

getDetectorZoom

public Float getDetectorZoom(int idxInstrument,
                             int idxDetector)
Specified by:
getDetectorZoom in interface loci.formats.meta.MetadataRetrieve

getDetectorAmplificationGain

public Float getDetectorAmplificationGain(int idxInstrument,
                                          int idxDetector)
Specified by:
getDetectorAmplificationGain in interface loci.formats.meta.MetadataRetrieve

getDetectorVoltage

public Float getDetectorVoltage(int idxInstrument,
                                int idxDetector)
Specified by:
getDetectorVoltage in interface loci.formats.meta.MetadataRetrieve

getDetectorOffset

public Float getDetectorOffset(int idxInstrument,
                               int idxDetector)
Specified by:
getDetectorOffset in interface loci.formats.meta.MetadataRetrieve

getDetectorModel

public String getDetectorModel(int idxInstrument,
                               int idxDetector)
Specified by:
getDetectorModel in interface loci.formats.meta.MetadataRetrieve

getDetectorType

public String getDetectorType(int idxInstrument,
                              int idxDetector)
Specified by:
getDetectorType in interface loci.formats.meta.MetadataRetrieve

getDetectorID

public String getDetectorID(int idxInstrument,
                            int idxDetector)
Specified by:
getDetectorID in interface loci.formats.meta.MetadataRetrieve

getDetectorManufacturer

public String getDetectorManufacturer(int idxInstrument,
                                      int idxDetector)
Specified by:
getDetectorManufacturer in interface loci.formats.meta.MetadataRetrieve

getLightSourceModel

public String getLightSourceModel(int idxInstrument,
                                  int idxLightSource)
Specified by:
getLightSourceModel in interface loci.formats.meta.MetadataRetrieve

getLightSourceSerialNumber

public String getLightSourceSerialNumber(int idxInstrument,
                                         int idxLightSource)
Specified by:
getLightSourceSerialNumber in interface loci.formats.meta.MetadataRetrieve

getLightSourceID

public String getLightSourceID(int idxInstrument,
                               int idxLightSource)
Specified by:
getLightSourceID in interface loci.formats.meta.MetadataRetrieve

getLightSourcePower

public Float getLightSourcePower(int idxInstrument,
                                 int idxLightSource)
Specified by:
getLightSourcePower in interface loci.formats.meta.MetadataRetrieve

getLightSourceManufacturer

public String getLightSourceManufacturer(int idxInstrument,
                                         int idxLightSource)
Specified by:
getLightSourceManufacturer in interface loci.formats.meta.MetadataRetrieve

getArcType

public String getArcType(int idxInstrument,
                         int idxLightSource)
Specified by:
getArcType in interface loci.formats.meta.MetadataRetrieve

getRectTransform

public String getRectTransform(int idxImage,
                               int idxROI,
                               int idxShape)
Specified by:
getRectTransform in interface loci.formats.meta.MetadataRetrieve

getRectHeight

public String getRectHeight(int idxImage,
                            int idxROI,
                            int idxShape)
Specified by:
getRectHeight in interface loci.formats.meta.MetadataRetrieve

getRectWidth

public String getRectWidth(int idxImage,
                           int idxROI,
                           int idxShape)
Specified by:
getRectWidth in interface loci.formats.meta.MetadataRetrieve

getRectY

public String getRectY(int idxImage,
                       int idxROI,
                       int idxShape)
Specified by:
getRectY in interface loci.formats.meta.MetadataRetrieve

getRectX

public String getRectX(int idxImage,
                       int idxROI,
                       int idxShape)
Specified by:
getRectX in interface loci.formats.meta.MetadataRetrieve

getRectID

public String getRectID(int idxImage,
                        int idxROI,
                        int idxShape)
Specified by:
getRectID in interface loci.formats.meta.MetadataRetrieve

getExperimentExperimenterRef

public String getExperimentExperimenterRef(int idxExperiment)
Specified by:
getExperimentExperimenterRef in interface loci.formats.meta.MetadataRetrieve

getExperimentType

public String getExperimentType(int idxExperiment)
Specified by:
getExperimentType in interface loci.formats.meta.MetadataRetrieve

getExperimentDescription

public String getExperimentDescription(int idxExperiment)
Specified by:
getExperimentDescription in interface loci.formats.meta.MetadataRetrieve

getExperimentID

public String getExperimentID(int idxExperiment)
Specified by:
getExperimentID in interface loci.formats.meta.MetadataRetrieve

getScreenAcquisitionEndTime

public String getScreenAcquisitionEndTime(int idxScreen,
                                          int idxScreenAcquisition)
Specified by:
getScreenAcquisitionEndTime in interface loci.formats.meta.MetadataRetrieve

getScreenAcquisitionID

public String getScreenAcquisitionID(int idxScreen,
                                     int idxScreenAcquisition)
Specified by:
getScreenAcquisitionID in interface loci.formats.meta.MetadataRetrieve

getScreenAcquisitionStartTime

public String getScreenAcquisitionStartTime(int idxScreen,
                                            int idxScreenAcquisition)
Specified by:
getScreenAcquisitionStartTime in interface loci.formats.meta.MetadataRetrieve

getPlaneTimingExposureTime

public Float getPlaneTimingExposureTime(int idxImage,
                                        int idxPixels,
                                        int idxPlane)
Specified by:
getPlaneTimingExposureTime in interface loci.formats.meta.MetadataRetrieve

getPlaneTimingDeltaT

public Float getPlaneTimingDeltaT(int idxImage,
                                  int idxPixels,
                                  int idxPlane)
Specified by:
getPlaneTimingDeltaT in interface loci.formats.meta.MetadataRetrieve

getImagingEnvironmentCO2Percent

public Float getImagingEnvironmentCO2Percent(int idxImage)
Specified by:
getImagingEnvironmentCO2Percent in interface loci.formats.meta.MetadataRetrieve

getImagingEnvironmentTemperature

public Float getImagingEnvironmentTemperature(int idxImage)
Specified by:
getImagingEnvironmentTemperature in interface loci.formats.meta.MetadataRetrieve

getImagingEnvironmentAirPressure

public Float getImagingEnvironmentAirPressure(int idxImage)
Specified by:
getImagingEnvironmentAirPressure in interface loci.formats.meta.MetadataRetrieve

getImagingEnvironmentHumidity

public Float getImagingEnvironmentHumidity(int idxImage)
Specified by:
getImagingEnvironmentHumidity in interface loci.formats.meta.MetadataRetrieve

getFilamentType

public String getFilamentType(int idxInstrument,
                              int idxLightSource)
Specified by:
getFilamentType in interface loci.formats.meta.MetadataRetrieve

getMicroscopeModel

public String getMicroscopeModel(int idxInstrument)
Specified by:
getMicroscopeModel in interface loci.formats.meta.MetadataRetrieve

getMicroscopeSerialNumber

public String getMicroscopeSerialNumber(int idxInstrument)
Specified by:
getMicroscopeSerialNumber in interface loci.formats.meta.MetadataRetrieve

getMicroscopeType

public String getMicroscopeType(int idxInstrument)
Specified by:
getMicroscopeType in interface loci.formats.meta.MetadataRetrieve

getMicroscopeID

public String getMicroscopeID(int idxInstrument)
Specified by:
getMicroscopeID in interface loci.formats.meta.MetadataRetrieve

getMicroscopeManufacturer

public String getMicroscopeManufacturer(int idxInstrument)
Specified by:
getMicroscopeManufacturer in interface loci.formats.meta.MetadataRetrieve

getChannelComponentIndex

public Integer getChannelComponentIndex(int idxImage,
                                        int idxLogicalChannel,
                                        int idxChannelComponent)
Specified by:
getChannelComponentIndex in interface loci.formats.meta.MetadataRetrieve

getChannelComponentColorDomain

public String getChannelComponentColorDomain(int idxImage,
                                             int idxLogicalChannel,
                                             int idxChannelComponent)
Specified by:
getChannelComponentColorDomain in interface loci.formats.meta.MetadataRetrieve

getChannelComponentPixels

public String getChannelComponentPixels(int idxImage,
                                        int idxLogicalChannel,
                                        int idxChannelComponent)
Specified by:
getChannelComponentPixels in interface loci.formats.meta.MetadataRetrieve

getLaserPockelCell

public Boolean getLaserPockelCell(int idxInstrument,
                                  int idxLightSource)
Specified by:
getLaserPockelCell in interface loci.formats.meta.MetadataRetrieve

getLaserTuneable

public Boolean getLaserTuneable(int idxInstrument,
                                int idxLightSource)
Specified by:
getLaserTuneable in interface loci.formats.meta.MetadataRetrieve

getLaserLaserMedium

public String getLaserLaserMedium(int idxInstrument,
                                  int idxLightSource)
Specified by:
getLaserLaserMedium in interface loci.formats.meta.MetadataRetrieve

getLaserPulse

public String getLaserPulse(int idxInstrument,
                            int idxLightSource)
Specified by:
getLaserPulse in interface loci.formats.meta.MetadataRetrieve

getLaserWavelength

public Integer getLaserWavelength(int idxInstrument,
                                  int idxLightSource)
Specified by:
getLaserWavelength in interface loci.formats.meta.MetadataRetrieve

getLaserFrequencyMultiplication

public Integer getLaserFrequencyMultiplication(int idxInstrument,
                                               int idxLightSource)
Specified by:
getLaserFrequencyMultiplication in interface loci.formats.meta.MetadataRetrieve

getLaserType

public String getLaserType(int idxInstrument,
                           int idxLightSource)
Specified by:
getLaserType in interface loci.formats.meta.MetadataRetrieve

getLaserRepetitionRate

public Boolean getLaserRepetitionRate(int idxInstrument,
                                      int idxLightSource)
Specified by:
getLaserRepetitionRate in interface loci.formats.meta.MetadataRetrieve

getScreenDescription

public String getScreenDescription(int idxScreen)
Specified by:
getScreenDescription in interface loci.formats.meta.MetadataRetrieve

getScreenReagentSetDescription

public String getScreenReagentSetDescription(int idxScreen)
Specified by:
getScreenReagentSetDescription in interface loci.formats.meta.MetadataRetrieve

getScreenProtocolIdentifier

public String getScreenProtocolIdentifier(int idxScreen)
Specified by:
getScreenProtocolIdentifier in interface loci.formats.meta.MetadataRetrieve

getScreenProtocolDescription

public String getScreenProtocolDescription(int idxScreen)
Specified by:
getScreenProtocolDescription in interface loci.formats.meta.MetadataRetrieve

getScreenExtern

public String getScreenExtern(int idxScreen)
Specified by:
getScreenExtern in interface loci.formats.meta.MetadataRetrieve

getScreenName

public String getScreenName(int idxScreen)
Specified by:
getScreenName in interface loci.formats.meta.MetadataRetrieve

getScreenType

public String getScreenType(int idxScreen)
Specified by:
getScreenType in interface loci.formats.meta.MetadataRetrieve

getScreenID

public String getScreenID(int idxScreen)
Specified by:
getScreenID in interface loci.formats.meta.MetadataRetrieve

getScreenReagentSetIdentifier

public String getScreenReagentSetIdentifier(int idxScreen)
Specified by:
getScreenReagentSetIdentifier in interface loci.formats.meta.MetadataRetrieve

getThumbnailMIMEtype

public String getThumbnailMIMEtype(int idxImage)
Specified by:
getThumbnailMIMEtype in interface loci.formats.meta.MetadataRetrieve

getThumbnailHref

public String getThumbnailHref(int idxImage)
Specified by:
getThumbnailHref in interface loci.formats.meta.MetadataRetrieve

getThumbnailID

public String getThumbnailID(int idxImage)
Specified by:
getThumbnailID in interface loci.formats.meta.MetadataRetrieve

getObjectiveIris

public Boolean getObjectiveIris(int idxInstrument,
                                int idxObjective)
Specified by:
getObjectiveIris in interface loci.formats.meta.MetadataRetrieve

getObjectiveWorkingDistance

public Float getObjectiveWorkingDistance(int idxInstrument,
                                         int idxObjective)
Specified by:
getObjectiveWorkingDistance in interface loci.formats.meta.MetadataRetrieve

getObjectiveImmersion

public String getObjectiveImmersion(int idxInstrument,
                                    int idxObjective)
Specified by:
getObjectiveImmersion in interface loci.formats.meta.MetadataRetrieve

getObjectiveCorrection

public String getObjectiveCorrection(int idxInstrument,
                                     int idxObjective)
Specified by:
getObjectiveCorrection in interface loci.formats.meta.MetadataRetrieve

getObjectiveSerialNumber

public String getObjectiveSerialNumber(int idxInstrument,
                                       int idxObjective)
Specified by:
getObjectiveSerialNumber in interface loci.formats.meta.MetadataRetrieve

getObjectiveLensNA

public Float getObjectiveLensNA(int idxInstrument,
                                int idxObjective)
Specified by:
getObjectiveLensNA in interface loci.formats.meta.MetadataRetrieve

getObjectiveNominalMagnification

public Integer getObjectiveNominalMagnification(int idxInstrument,
                                                int idxObjective)
Specified by:
getObjectiveNominalMagnification in interface loci.formats.meta.MetadataRetrieve

getObjectiveModel

public String getObjectiveModel(int idxInstrument,
                                int idxObjective)
Specified by:
getObjectiveModel in interface loci.formats.meta.MetadataRetrieve

getObjectiveCalibratedMagnification

public Float getObjectiveCalibratedMagnification(int idxInstrument,
                                                 int idxObjective)
Specified by:
getObjectiveCalibratedMagnification in interface loci.formats.meta.MetadataRetrieve

getObjectiveID

public String getObjectiveID(int idxInstrument,
                             int idxObjective)
Specified by:
getObjectiveID in interface loci.formats.meta.MetadataRetrieve

getObjectiveManufacturer

public String getObjectiveManufacturer(int idxInstrument,
                                       int idxObjective)
Specified by:
getObjectiveManufacturer in interface loci.formats.meta.MetadataRetrieve

getCircleR

public String getCircleR(int idxImage,
                         int idxROI,
                         int idxShape)
Specified by:
getCircleR in interface loci.formats.meta.MetadataRetrieve

getCircleCy

public String getCircleCy(int idxImage,
                          int idxROI,
                          int idxShape)
Specified by:
getCircleCy in interface loci.formats.meta.MetadataRetrieve

getCircleCx

public String getCircleCx(int idxImage,
                          int idxROI,
                          int idxShape)
Specified by:
getCircleCx in interface loci.formats.meta.MetadataRetrieve

getCircleID

public String getCircleID(int idxImage,
                          int idxROI,
                          int idxShape)
Specified by:
getCircleID in interface loci.formats.meta.MetadataRetrieve

getCircleTransform

public String getCircleTransform(int idxImage,
                                 int idxROI,
                                 int idxShape)
Specified by:
getCircleTransform in interface loci.formats.meta.MetadataRetrieve

getDatasetRefID

public String getDatasetRefID(int idxImage,
                              int idxDatasetRef)
Specified by:
getDatasetRefID in interface loci.formats.meta.MetadataRetrieve

getMicrobeamManipulationRefID

public String getMicrobeamManipulationRefID(int idxExperiment,
                                            int idxMicrobeamManipulationRef)
Specified by:
getMicrobeamManipulationRefID in interface loci.formats.meta.MetadataRetrieve

getLightSourceRefLightSource

public String getLightSourceRefLightSource(int idxImage,
                                           int idxMicrobeamManipulation,
                                           int idxLightSourceRef)
Specified by:
getLightSourceRefLightSource in interface loci.formats.meta.MetadataRetrieve

getLightSourceRefWavelength

public Integer getLightSourceRefWavelength(int idxImage,
                                           int idxMicrobeamManipulation,
                                           int idxLightSourceRef)
Specified by:
getLightSourceRefWavelength in interface loci.formats.meta.MetadataRetrieve

getLightSourceRefAttenuation

public Float getLightSourceRefAttenuation(int idxImage,
                                          int idxMicrobeamManipulation,
                                          int idxLightSourceRef)
Specified by:
getLightSourceRefAttenuation in interface loci.formats.meta.MetadataRetrieve

getPointR

public String getPointR(int idxImage,
                        int idxROI,
                        int idxShape)
Specified by:
getPointR in interface loci.formats.meta.MetadataRetrieve

getPointCy

public String getPointCy(int idxImage,
                         int idxROI,
                         int idxShape)
Specified by:
getPointCy in interface loci.formats.meta.MetadataRetrieve

getPointCx

public String getPointCx(int idxImage,
                         int idxROI,
                         int idxShape)
Specified by:
getPointCx in interface loci.formats.meta.MetadataRetrieve

getPointID

public String getPointID(int idxImage,
                         int idxROI,
                         int idxShape)
Specified by:
getPointID in interface loci.formats.meta.MetadataRetrieve

getPointTransform

public String getPointTransform(int idxImage,
                                int idxROI,
                                int idxShape)
Specified by:
getPointTransform in interface loci.formats.meta.MetadataRetrieve

getFilterFilterWheel

public String getFilterFilterWheel(int idxInstrument,
                                   int idxFilter)
Specified by:
getFilterFilterWheel in interface loci.formats.meta.MetadataRetrieve

getFilterModel

public String getFilterModel(int idxInstrument,
                             int idxFilter)
Specified by:
getFilterModel in interface loci.formats.meta.MetadataRetrieve

getFilterLotNumber

public String getFilterLotNumber(int idxInstrument,
                                 int idxFilter)
Specified by:
getFilterLotNumber in interface loci.formats.meta.MetadataRetrieve

getFilterType

public String getFilterType(int idxInstrument,
                            int idxFilter)
Specified by:
getFilterType in interface loci.formats.meta.MetadataRetrieve

getFilterManufacturer

public String getFilterManufacturer(int idxInstrument,
                                    int idxFilter)
Specified by:
getFilterManufacturer in interface loci.formats.meta.MetadataRetrieve

getMicrobeamManipulationExperimenterRef

public String getMicrobeamManipulationExperimenterRef(int idxImage,
                                                      int idxMicrobeamManipulation)
Specified by:
getMicrobeamManipulationExperimenterRef in interface loci.formats.meta.MetadataRetrieve

getMicrobeamManipulationType

public String getMicrobeamManipulationType(int idxImage,
                                           int idxMicrobeamManipulation)
Specified by:
getMicrobeamManipulationType in interface loci.formats.meta.MetadataRetrieve

getMicrobeamManipulationID

public String getMicrobeamManipulationID(int idxImage,
                                         int idxMicrobeamManipulation)
Specified by:
getMicrobeamManipulationID in interface loci.formats.meta.MetadataRetrieve

getEllipseRx

public String getEllipseRx(int idxImage,
                           int idxROI,
                           int idxShape)
Specified by:
getEllipseRx in interface loci.formats.meta.MetadataRetrieve

getEllipseRy

public String getEllipseRy(int idxImage,
                           int idxROI,
                           int idxShape)
Specified by:
getEllipseRy in interface loci.formats.meta.MetadataRetrieve

getEllipseTransform

public String getEllipseTransform(int idxImage,
                                  int idxROI,
                                  int idxShape)
Specified by:
getEllipseTransform in interface loci.formats.meta.MetadataRetrieve

getEllipseCy

public String getEllipseCy(int idxImage,
                           int idxROI,
                           int idxShape)
Specified by:
getEllipseCy in interface loci.formats.meta.MetadataRetrieve

getEllipseCx

public String getEllipseCx(int idxImage,
                           int idxROI,
                           int idxShape)
Specified by:
getEllipseCx in interface loci.formats.meta.MetadataRetrieve

getEllipseID

public String getEllipseID(int idxImage,
                           int idxROI,
                           int idxShape)
Specified by:
getEllipseID in interface loci.formats.meta.MetadataRetrieve

getGreyChannelChannelNumber

public Integer getGreyChannelChannelNumber(int idxImage)

getGreyChannelBlackLevel

public Float getGreyChannelBlackLevel(int idxImage)

getGreyChannelWhiteLevel

public Float getGreyChannelWhiteLevel(int idxImage)

getGreyChannelGamma

public Float getGreyChannelGamma(int idxImage)

getGreyChannelisOn

public Boolean getGreyChannelisOn(int idxImage)

getTransmittanceRangeCutIn

public Integer getTransmittanceRangeCutIn(int idxInstrument,
                                          int idxFilter)
Specified by:
getTransmittanceRangeCutIn in interface loci.formats.meta.MetadataRetrieve

getTransmittanceRangeTransmittance

public Integer getTransmittanceRangeTransmittance(int idxInstrument,
                                                  int idxFilter)
Specified by:
getTransmittanceRangeTransmittance in interface loci.formats.meta.MetadataRetrieve

getTransmittanceRangeCutOut

public Integer getTransmittanceRangeCutOut(int idxInstrument,
                                           int idxFilter)
Specified by:
getTransmittanceRangeCutOut in interface loci.formats.meta.MetadataRetrieve

getTransmittanceRangeCutInTolerance

public Integer getTransmittanceRangeCutInTolerance(int idxInstrument,
                                                   int idxFilter)
Specified by:
getTransmittanceRangeCutInTolerance in interface loci.formats.meta.MetadataRetrieve

getTransmittanceRangeCutOutTolerance

public Integer getTransmittanceRangeCutOutTolerance(int idxInstrument,
                                                    int idxFilter)
Specified by:
getTransmittanceRangeCutOutTolerance in interface loci.formats.meta.MetadataRetrieve

getImageExperimentRef

public String getImageExperimentRef(int idxImage)
Specified by:
getImageExperimentRef in interface loci.formats.meta.MetadataRetrieve

getImageDescription

public String getImageDescription(int idxImage)
Specified by:
getImageDescription in interface loci.formats.meta.MetadataRetrieve

getImageExperimenterRef

public String getImageExperimenterRef(int idxImage)
Specified by:
getImageExperimenterRef in interface loci.formats.meta.MetadataRetrieve

getImageGroupRef

public String getImageGroupRef(int idxImage)
Specified by:
getImageGroupRef in interface loci.formats.meta.MetadataRetrieve

getImageInstrumentRef

public String getImageInstrumentRef(int idxImage)
Specified by:
getImageInstrumentRef in interface loci.formats.meta.MetadataRetrieve

getImageDefaultPixels

public String getImageDefaultPixels(int idxImage)
Specified by:
getImageDefaultPixels in interface loci.formats.meta.MetadataRetrieve

getImageAcquiredPixels

public String getImageAcquiredPixels(int idxImage)
Specified by:
getImageAcquiredPixels in interface loci.formats.meta.MetadataRetrieve

getImageObjective

public String getImageObjective(int idxImage)

getImageCreationDate

public String getImageCreationDate(int idxImage)
Specified by:
getImageCreationDate in interface loci.formats.meta.MetadataRetrieve

getImageID

public String getImageID(int idxImage)
Specified by:
getImageID in interface loci.formats.meta.MetadataRetrieve

getImageName

public String getImageName(int idxImage)
Specified by:
getImageName in interface loci.formats.meta.MetadataRetrieve

getROIT0

public Integer getROIT0(int idxImage,
                        int idxROI)
Specified by:
getROIT0 in interface loci.formats.meta.MetadataRetrieve

getROIT1

public Integer getROIT1(int idxImage,
                        int idxROI)
Specified by:
getROIT1 in interface loci.formats.meta.MetadataRetrieve

getROIY1

public Integer getROIY1(int idxImage,
                        int idxROI)
Specified by:
getROIY1 in interface loci.formats.meta.MetadataRetrieve

getROIY0

public Integer getROIY0(int idxImage,
                        int idxROI)
Specified by:
getROIY0 in interface loci.formats.meta.MetadataRetrieve

getROIX0

public Integer getROIX0(int idxImage,
                        int idxROI)
Specified by:
getROIX0 in interface loci.formats.meta.MetadataRetrieve

getROIX1

public Integer getROIX1(int idxImage,
                        int idxROI)
Specified by:
getROIX1 in interface loci.formats.meta.MetadataRetrieve

getROIZ0

public Integer getROIZ0(int idxImage,
                        int idxROI)
Specified by:
getROIZ0 in interface loci.formats.meta.MetadataRetrieve

getROIZ1

public Integer getROIZ1(int idxImage,
                        int idxROI)
Specified by:
getROIZ1 in interface loci.formats.meta.MetadataRetrieve

getROIID

public String getROIID(int idxImage,
                       int idxROI)
Specified by:
getROIID in interface loci.formats.meta.MetadataRetrieve

getShapeTextAnchor

public String getShapeTextAnchor(int idxImage,
                                 int idxROI,
                                 int idxShape)
Specified by:
getShapeTextAnchor in interface loci.formats.meta.MetadataRetrieve

getShapeVectorEffect

public String getShapeVectorEffect(int idxImage,
                                   int idxROI,
                                   int idxShape)
Specified by:
getShapeVectorEffect in interface loci.formats.meta.MetadataRetrieve

getShapeFontStyle

public String getShapeFontStyle(int idxImage,
                                int idxROI,
                                int idxShape)
Specified by:
getShapeFontStyle in interface loci.formats.meta.MetadataRetrieve

getShapeStrokeLineJoin

public String getShapeStrokeLineJoin(int idxImage,
                                     int idxROI,
                                     int idxShape)
Specified by:
getShapeStrokeLineJoin in interface loci.formats.meta.MetadataRetrieve

getShapeBaselineShift

public String getShapeBaselineShift(int idxImage,
                                    int idxROI,
                                    int idxShape)
Specified by:
getShapeBaselineShift in interface loci.formats.meta.MetadataRetrieve

getShapeVisibility

public Boolean getShapeVisibility(int idxImage,
                                  int idxROI,
                                  int idxShape)
Specified by:
getShapeVisibility in interface loci.formats.meta.MetadataRetrieve

getShapeTheT

public Integer getShapeTheT(int idxImage,
                            int idxROI,
                            int idxShape)
Specified by:
getShapeTheT in interface loci.formats.meta.MetadataRetrieve

getShapeFontStretch

public String getShapeFontStretch(int idxImage,
                                  int idxROI,
                                  int idxShape)
Specified by:
getShapeFontStretch in interface loci.formats.meta.MetadataRetrieve

getShapeStrokeLineCap

public String getShapeStrokeLineCap(int idxImage,
                                    int idxROI,
                                    int idxShape)
Specified by:
getShapeStrokeLineCap in interface loci.formats.meta.MetadataRetrieve

getShapeStrokeDashArray

public String getShapeStrokeDashArray(int idxImage,
                                      int idxROI,
                                      int idxShape)
Specified by:
getShapeStrokeDashArray in interface loci.formats.meta.MetadataRetrieve

getShapeDirection

public String getShapeDirection(int idxImage,
                                int idxROI,
                                int idxShape)
Specified by:
getShapeDirection in interface loci.formats.meta.MetadataRetrieve

getShapeGlyphOrientationVertical

public Integer getShapeGlyphOrientationVertical(int idxImage,
                                                int idxROI,
                                                int idxShape)
Specified by:
getShapeGlyphOrientationVertical in interface loci.formats.meta.MetadataRetrieve

getShapeFontVariant

public String getShapeFontVariant(int idxImage,
                                  int idxROI,
                                  int idxShape)
Specified by:
getShapeFontVariant in interface loci.formats.meta.MetadataRetrieve

getShapeStrokeOpacity

public Float getShapeStrokeOpacity(int idxImage,
                                   int idxROI,
                                   int idxShape)
Specified by:
getShapeStrokeOpacity in interface loci.formats.meta.MetadataRetrieve

getShapeFontFamily

public String getShapeFontFamily(int idxImage,
                                 int idxROI,
                                 int idxShape)
Specified by:
getShapeFontFamily in interface loci.formats.meta.MetadataRetrieve

getShapeFillRule

public String getShapeFillRule(int idxImage,
                               int idxROI,
                               int idxShape)
Specified by:
getShapeFillRule in interface loci.formats.meta.MetadataRetrieve

getShapeStrokeAttribute

public String getShapeStrokeAttribute(int idxImage,
                                      int idxROI,
                                      int idxShape)
Specified by:
getShapeStrokeAttribute in interface loci.formats.meta.MetadataRetrieve

getShapeLocked

public Boolean getShapeLocked(int idxImage,
                              int idxROI,
                              int idxShape)
Specified by:
getShapeLocked in interface loci.formats.meta.MetadataRetrieve

getShapeTextDecoration

public String getShapeTextDecoration(int idxImage,
                                     int idxROI,
                                     int idxShape)
Specified by:
getShapeTextDecoration in interface loci.formats.meta.MetadataRetrieve

getShapeG

public String getShapeG(int idxImage,
                        int idxROI,
                        int idxShape)
Specified by:
getShapeG in interface loci.formats.meta.MetadataRetrieve

getShapeWritingMode

public String getShapeWritingMode(int idxImage,
                                  int idxROI,
                                  int idxShape)
Specified by:
getShapeWritingMode in interface loci.formats.meta.MetadataRetrieve

getShapeFontSize

public Integer getShapeFontSize(int idxImage,
                                int idxROI,
                                int idxShape)
Specified by:
getShapeFontSize in interface loci.formats.meta.MetadataRetrieve

getShapeFillColor

public String getShapeFillColor(int idxImage,
                                int idxROI,
                                int idxShape)
Specified by:
getShapeFillColor in interface loci.formats.meta.MetadataRetrieve

getShapeID

public String getShapeID(int idxImage,
                         int idxROI,
                         int idxShape)
Specified by:
getShapeID in interface loci.formats.meta.MetadataRetrieve

getShapeStrokeWidth

public Integer getShapeStrokeWidth(int idxImage,
                                   int idxROI,
                                   int idxShape)
Specified by:
getShapeStrokeWidth in interface loci.formats.meta.MetadataRetrieve

getShapeTextStroke

public String getShapeTextStroke(int idxImage,
                                 int idxROI,
                                 int idxShape)
Specified by:
getShapeTextStroke in interface loci.formats.meta.MetadataRetrieve

getShapeStrokeMiterLimit

public Integer getShapeStrokeMiterLimit(int idxImage,
                                        int idxROI,
                                        int idxShape)
Specified by:
getShapeStrokeMiterLimit in interface loci.formats.meta.MetadataRetrieve

getShapeText

public String getShapeText(int idxImage,
                           int idxROI,
                           int idxShape)
Specified by:
getShapeText in interface loci.formats.meta.MetadataRetrieve

getShapeTextFill

public String getShapeTextFill(int idxImage,
                               int idxROI,
                               int idxShape)
Specified by:
getShapeTextFill in interface loci.formats.meta.MetadataRetrieve

getShapeFontWeight

public String getShapeFontWeight(int idxImage,
                                 int idxROI,
                                 int idxShape)
Specified by:
getShapeFontWeight in interface loci.formats.meta.MetadataRetrieve

getShapeFillOpacity

public String getShapeFillOpacity(int idxImage,
                                  int idxROI,
                                  int idxShape)
Specified by:
getShapeFillOpacity in interface loci.formats.meta.MetadataRetrieve

getShapeStrokeColor

public String getShapeStrokeColor(int idxImage,
                                  int idxROI,
                                  int idxShape)
Specified by:
getShapeStrokeColor in interface loci.formats.meta.MetadataRetrieve

getShapeTheZ

public Integer getShapeTheZ(int idxImage,
                            int idxROI,
                            int idxShape)
Specified by:
getShapeTheZ in interface loci.formats.meta.MetadataRetrieve

getContactExperimenter

public String getContactExperimenter(int idxGroup)
Specified by:
getContactExperimenter in interface loci.formats.meta.MetadataRetrieve

getPolygonPoints

public String getPolygonPoints(int idxImage,
                               int idxROI,
                               int idxShape)
Specified by:
getPolygonPoints in interface loci.formats.meta.MetadataRetrieve

getPolygonID

public String getPolygonID(int idxImage,
                           int idxROI,
                           int idxShape)
Specified by:
getPolygonID in interface loci.formats.meta.MetadataRetrieve

getPolygonTransform

public String getPolygonTransform(int idxImage,
                                  int idxROI,
                                  int idxShape)
Specified by:
getPolygonTransform in interface loci.formats.meta.MetadataRetrieve

getMaskTransform

public String getMaskTransform(int idxImage,
                               int idxROI,
                               int idxShape)
Specified by:
getMaskTransform in interface loci.formats.meta.MetadataRetrieve

getMaskHeight

public String getMaskHeight(int idxImage,
                            int idxROI,
                            int idxShape)
Specified by:
getMaskHeight in interface loci.formats.meta.MetadataRetrieve

getMaskWidth

public String getMaskWidth(int idxImage,
                           int idxROI,
                           int idxShape)
Specified by:
getMaskWidth in interface loci.formats.meta.MetadataRetrieve

getMaskY

public String getMaskY(int idxImage,
                       int idxROI,
                       int idxShape)
Specified by:
getMaskY in interface loci.formats.meta.MetadataRetrieve

getMaskX

public String getMaskX(int idxImage,
                       int idxROI,
                       int idxShape)
Specified by:
getMaskX in interface loci.formats.meta.MetadataRetrieve

getMaskID

public String getMaskID(int idxImage,
                        int idxROI,
                        int idxShape)
Specified by:
getMaskID in interface loci.formats.meta.MetadataRetrieve

getStageLabelY

public Float getStageLabelY(int idxImage)
Specified by:
getStageLabelY in interface loci.formats.meta.MetadataRetrieve

getStageLabelX

public Float getStageLabelX(int idxImage)
Specified by:
getStageLabelX in interface loci.formats.meta.MetadataRetrieve

getStageLabelZ

public Float getStageLabelZ(int idxImage)
Specified by:
getStageLabelZ in interface loci.formats.meta.MetadataRetrieve

getStageLabelName

public String getStageLabelName(int idxImage)
Specified by:
getStageLabelName in interface loci.formats.meta.MetadataRetrieve

getTiffDataUUID

public String getTiffDataUUID(int idxImage,
                              int idxPixels,
                              int idxTiffData)
Specified by:
getTiffDataUUID in interface loci.formats.meta.MetadataRetrieve

getTiffDataNumPlanes

public Integer getTiffDataNumPlanes(int idxImage,
                                    int idxPixels,
                                    int idxTiffData)
Specified by:
getTiffDataNumPlanes in interface loci.formats.meta.MetadataRetrieve

getTiffDataFirstC

public Integer getTiffDataFirstC(int idxImage,
                                 int idxPixels,
                                 int idxTiffData)
Specified by:
getTiffDataFirstC in interface loci.formats.meta.MetadataRetrieve

getTiffDataFileName

public String getTiffDataFileName(int idxImage,
                                  int idxPixels,
                                  int idxTiffData)
Specified by:
getTiffDataFileName in interface loci.formats.meta.MetadataRetrieve

getTiffDataIFD

public Integer getTiffDataIFD(int idxImage,
                              int idxPixels,
                              int idxTiffData)
Specified by:
getTiffDataIFD in interface loci.formats.meta.MetadataRetrieve

getTiffDataFirstZ

public Integer getTiffDataFirstZ(int idxImage,
                                 int idxPixels,
                                 int idxTiffData)
Specified by:
getTiffDataFirstZ in interface loci.formats.meta.MetadataRetrieve

getTiffDataFirstT

public Integer getTiffDataFirstT(int idxImage,
                                 int idxPixels,
                                 int idxTiffData)
Specified by:
getTiffDataFirstT in interface loci.formats.meta.MetadataRetrieve

getDisplayOptionsID

public String getDisplayOptionsID(int idxImage)
Specified by:
getDisplayOptionsID in interface loci.formats.meta.MetadataRetrieve

getDisplayOptionsDisplay

public String getDisplayOptionsDisplay(int idxImage)
Specified by:
getDisplayOptionsDisplay in interface loci.formats.meta.MetadataRetrieve

getDisplayOptionsZoom

public Float getDisplayOptionsZoom(int idxImage)
Specified by:
getDisplayOptionsZoom in interface loci.formats.meta.MetadataRetrieve

getFilterSetDichroic

public String getFilterSetDichroic(int idxInstrument,
                                   int idxFilterSet)
Specified by:
getFilterSetDichroic in interface loci.formats.meta.MetadataRetrieve

getFilterSetExFilter

public String getFilterSetExFilter(int idxInstrument,
                                   int idxFilterSet)
Specified by:
getFilterSetExFilter in interface loci.formats.meta.MetadataRetrieve

getFilterSetLotNumber

public String getFilterSetLotNumber(int idxInstrument,
                                    int idxFilterSet)
Specified by:
getFilterSetLotNumber in interface loci.formats.meta.MetadataRetrieve

getFilterSetEmFilter

public String getFilterSetEmFilter(int idxInstrument,
                                   int idxFilterSet)
Specified by:
getFilterSetEmFilter in interface loci.formats.meta.MetadataRetrieve

getFilterSetModel

public String getFilterSetModel(int idxInstrument,
                                int idxFilterSet)
Specified by:
getFilterSetModel in interface loci.formats.meta.MetadataRetrieve

getFilterSetManufacturer

public String getFilterSetManufacturer(int idxInstrument,
                                       int idxFilterSet)
Specified by:
getFilterSetManufacturer in interface loci.formats.meta.MetadataRetrieve

getWellExternalIdentifier

public String getWellExternalIdentifier(int idxPlate,
                                        int idxWell)
Specified by:
getWellExternalIdentifier in interface loci.formats.meta.MetadataRetrieve

getWellColumn

public Integer getWellColumn(int idxPlate,
                             int idxWell)
Specified by:
getWellColumn in interface loci.formats.meta.MetadataRetrieve

getWellExternalDescription

public String getWellExternalDescription(int idxPlate,
                                         int idxWell)
Specified by:
getWellExternalDescription in interface loci.formats.meta.MetadataRetrieve

getWellReagent

public String getWellReagent(int idxPlate,
                             int idxWell)
Specified by:
getWellReagent in interface loci.formats.meta.MetadataRetrieve

getWellType

public String getWellType(int idxPlate,
                          int idxWell)
Specified by:
getWellType in interface loci.formats.meta.MetadataRetrieve

getWellID

public String getWellID(int idxPlate,
                        int idxWell)
Specified by:
getWellID in interface loci.formats.meta.MetadataRetrieve

getWellRow

public Integer getWellRow(int idxPlate,
                          int idxWell)
Specified by:
getWellRow in interface loci.formats.meta.MetadataRetrieve

getPlaneID

public String getPlaneID(int idxImage,
                         int idxPixels,
                         int idxPlane)
Specified by:
getPlaneID in interface loci.formats.meta.MetadataRetrieve

getPlaneTheT

public Integer getPlaneTheT(int idxImage,
                            int idxPixels,
                            int idxPlane)
Specified by:
getPlaneTheT in interface loci.formats.meta.MetadataRetrieve

getPlaneTheC

public Integer getPlaneTheC(int idxImage,
                            int idxPixels,
                            int idxPlane)
Specified by:
getPlaneTheC in interface loci.formats.meta.MetadataRetrieve

getPlaneTheZ

public Integer getPlaneTheZ(int idxImage,
                            int idxPixels,
                            int idxPlane)
Specified by:
getPlaneTheZ in interface loci.formats.meta.MetadataRetrieve

getPlaneHashSHA1

public String getPlaneHashSHA1(int idxImage,
                               int idxPixels,
                               int idxPlane)
Specified by:
getPlaneHashSHA1 in interface loci.formats.meta.MetadataRetrieve

getLineX1

public String getLineX1(int idxImage,
                        int idxROI,
                        int idxShape)
Specified by:
getLineX1 in interface loci.formats.meta.MetadataRetrieve

getLineTransform

public String getLineTransform(int idxImage,
                               int idxROI,
                               int idxShape)
Specified by:
getLineTransform in interface loci.formats.meta.MetadataRetrieve

getLineY1

public String getLineY1(int idxImage,
                        int idxROI,
                        int idxShape)
Specified by:
getLineY1 in interface loci.formats.meta.MetadataRetrieve

getLineX2

public String getLineX2(int idxImage,
                        int idxROI,
                        int idxShape)
Specified by:
getLineX2 in interface loci.formats.meta.MetadataRetrieve

getLineY2

public String getLineY2(int idxImage,
                        int idxROI,
                        int idxShape)
Specified by:
getLineY2 in interface loci.formats.meta.MetadataRetrieve

getLineID

public String getLineID(int idxImage,
                        int idxROI,
                        int idxShape)
Specified by:
getLineID in interface loci.formats.meta.MetadataRetrieve

getOTFPixelType

public String getOTFPixelType(int idxInstrument,
                              int idxOTF)
Specified by:
getOTFPixelType in interface loci.formats.meta.MetadataRetrieve

getOTFSizeX

public Integer getOTFSizeX(int idxInstrument,
                           int idxOTF)
Specified by:
getOTFSizeX in interface loci.formats.meta.MetadataRetrieve

getOTFSizeY

public Integer getOTFSizeY(int idxInstrument,
                           int idxOTF)
Specified by:
getOTFSizeY in interface loci.formats.meta.MetadataRetrieve

getOTFOpticalAxisAveraged

public Boolean getOTFOpticalAxisAveraged(int idxInstrument,
                                         int idxOTF)
Specified by:
getOTFOpticalAxisAveraged in interface loci.formats.meta.MetadataRetrieve

getOTFObjective

public String getOTFObjective(int idxInstrument,
                              int idxOTF)
Specified by:
getOTFObjective in interface loci.formats.meta.MetadataRetrieve

getOTFBinaryFile

public String getOTFBinaryFile(int idxInstrument,
                               int idxOTF)
Specified by:
getOTFBinaryFile in interface loci.formats.meta.MetadataRetrieve

getOTFID

public String getOTFID(int idxInstrument,
                       int idxOTF)
Specified by:
getOTFID in interface loci.formats.meta.MetadataRetrieve

getDetectorSettingsBinning

public String getDetectorSettingsBinning(int imageIndex,
                                         int logicalChannelIndex)
Specified by:
getDetectorSettingsBinning in interface loci.formats.meta.MetadataRetrieve

getDetectorSettingsDetector

public String getDetectorSettingsDetector(int imageIndex,
                                          int logicalChannelIndex)
Specified by:
getDetectorSettingsDetector in interface loci.formats.meta.MetadataRetrieve

getDetectorSettingsGain

public Float getDetectorSettingsGain(int imageIndex,
                                     int logicalChannelIndex)
Specified by:
getDetectorSettingsGain in interface loci.formats.meta.MetadataRetrieve

getDetectorSettingsOffset

public Float getDetectorSettingsOffset(int imageIndex,
                                       int logicalChannelIndex)
Specified by:
getDetectorSettingsOffset in interface loci.formats.meta.MetadataRetrieve

getDetectorSettingsReadOutRate

public Float getDetectorSettingsReadOutRate(int imageIndex,
                                            int logicalChannelIndex)
Specified by:
getDetectorSettingsReadOutRate in interface loci.formats.meta.MetadataRetrieve

getDetectorSettingsVoltage

public Float getDetectorSettingsVoltage(int imageIndex,
                                        int logicalChannelIndex)
Specified by:
getDetectorSettingsVoltage in interface loci.formats.meta.MetadataRetrieve

getDimensionsPhysicalSizeX

public Float getDimensionsPhysicalSizeX(int imageIndex,
                                        int pixelsIndex)
Specified by:
getDimensionsPhysicalSizeX in interface loci.formats.meta.MetadataRetrieve

getDimensionsPhysicalSizeY

public Float getDimensionsPhysicalSizeY(int imageIndex,
                                        int pixelsIndex)
Specified by:
getDimensionsPhysicalSizeY in interface loci.formats.meta.MetadataRetrieve

getDimensionsPhysicalSizeZ

public Float getDimensionsPhysicalSizeZ(int imageIndex,
                                        int pixelsIndex)
Specified by:
getDimensionsPhysicalSizeZ in interface loci.formats.meta.MetadataRetrieve

getDimensionsTimeIncrement

public Float getDimensionsTimeIncrement(int imageIndex,
                                        int pixelsIndex)
Specified by:
getDimensionsTimeIncrement in interface loci.formats.meta.MetadataRetrieve

getDimensionsWaveIncrement

public Integer getDimensionsWaveIncrement(int imageIndex,
                                          int pixelsIndex)
Specified by:
getDimensionsWaveIncrement in interface loci.formats.meta.MetadataRetrieve

getDimensionsWaveStart

public Integer getDimensionsWaveStart(int imageIndex,
                                      int pixelsIndex)
Specified by:
getDimensionsWaveStart in interface loci.formats.meta.MetadataRetrieve

getDisplayOptionsProjectionZStart

public Integer getDisplayOptionsProjectionZStart(int imageIndex)

getDisplayOptionsProjectionZStop

public Integer getDisplayOptionsProjectionZStop(int imageIndex)

getDisplayOptionsTimeTStart

public Integer getDisplayOptionsTimeTStart(int imageIndex)

getDisplayOptionsTimeTStop

public Integer getDisplayOptionsTimeTStop(int imageIndex)

getEmFilterLotNumber

public String getEmFilterLotNumber(int instrumentIndex,
                                   int filterIndex)
Specified by:
getEmFilterLotNumber in interface loci.formats.meta.MetadataRetrieve

getEmFilterManufacturer

public String getEmFilterManufacturer(int instrumentIndex,
                                      int filterIndex)
Specified by:
getEmFilterManufacturer in interface loci.formats.meta.MetadataRetrieve

getEmFilterModel

public String getEmFilterModel(int instrumentIndex,
                               int filterIndex)
Specified by:
getEmFilterModel in interface loci.formats.meta.MetadataRetrieve

getEmFilterType

public String getEmFilterType(int instrumentIndex,
                              int filterIndex)
Specified by:
getEmFilterType in interface loci.formats.meta.MetadataRetrieve

getExFilterLotNumber

public String getExFilterLotNumber(int instrumentIndex,
                                   int filterIndex)
Specified by:
getExFilterLotNumber in interface loci.formats.meta.MetadataRetrieve

getExFilterManufacturer

public String getExFilterManufacturer(int instrumentIndex,
                                      int filterIndex)
Specified by:
getExFilterManufacturer in interface loci.formats.meta.MetadataRetrieve

getExFilterModel

public String getExFilterModel(int instrumentIndex,
                               int filterIndex)
Specified by:
getExFilterModel in interface loci.formats.meta.MetadataRetrieve

getExFilterType

public String getExFilterType(int instrumentIndex,
                              int filterIndex)
Specified by:
getExFilterType in interface loci.formats.meta.MetadataRetrieve

getExperimenterMembershipCount

public int getExperimenterMembershipCount(int experimenterIndex)
Specified by:
getExperimenterMembershipCount in interface loci.formats.meta.MetadataRetrieve

getExperimenterMembershipGroup

public String getExperimenterMembershipGroup(int experimenterIndex,
                                             int groupRefIndex)
Specified by:
getExperimenterMembershipGroup in interface loci.formats.meta.MetadataRetrieve

getGreyChannelMapColorMap

public String getGreyChannelMapColorMap(int imageIndex)

getLightSourceSettingsAttenuation

public Float getLightSourceSettingsAttenuation(int imageIndex,
                                               int logicalChannelIndex)
Specified by:
getLightSourceSettingsAttenuation in interface loci.formats.meta.MetadataRetrieve

getLightSourceSettingsLightSource

public String getLightSourceSettingsLightSource(int imageIndex,
                                                int logicalChannelIndex)
Specified by:
getLightSourceSettingsLightSource in interface loci.formats.meta.MetadataRetrieve

getLightSourceSettingsWavelength

public Integer getLightSourceSettingsWavelength(int imageIndex,
                                                int logicalChannelIndex)
Specified by:
getLightSourceSettingsWavelength in interface loci.formats.meta.MetadataRetrieve

getObjectiveSettingsCorrectionCollar

public Float getObjectiveSettingsCorrectionCollar(int imageIndex)
Specified by:
getObjectiveSettingsCorrectionCollar in interface loci.formats.meta.MetadataRetrieve

getObjectiveSettingsMedium

public String getObjectiveSettingsMedium(int imageIndex)
Specified by:
getObjectiveSettingsMedium in interface loci.formats.meta.MetadataRetrieve

getObjectiveSettingsObjective

public String getObjectiveSettingsObjective(int imageIndex)
Specified by:
getObjectiveSettingsObjective in interface loci.formats.meta.MetadataRetrieve

getObjectiveSettingsRefractiveIndex

public Float getObjectiveSettingsRefractiveIndex(int imageIndex)
Specified by:
getObjectiveSettingsRefractiveIndex in interface loci.formats.meta.MetadataRetrieve

getPathD

public String getPathD(int imageIndex,
                       int roiIndex,
                       int shapeIndex)
Specified by:
getPathD in interface loci.formats.meta.MetadataRetrieve

getPathID

public String getPathID(int imageIndex,
                        int roiIndex,
                        int shapeIndex)
Specified by:
getPathID in interface loci.formats.meta.MetadataRetrieve

getDichroicID

public String getDichroicID(int arg0,
                            int arg1)
Specified by:
getDichroicID in interface loci.formats.meta.MetadataRetrieve

getFilterID

public String getFilterID(int arg0,
                          int arg1)
Specified by:
getFilterID in interface loci.formats.meta.MetadataRetrieve

getFilterSetID

public String getFilterSetID(int arg0,
                             int arg1)
Specified by:
getFilterSetID in interface loci.formats.meta.MetadataRetrieve

getRoiLinkCount

public int getRoiLinkCount(int arg0,
                           int arg1)
Specified by:
getRoiLinkCount in interface loci.formats.meta.MetadataRetrieve

getRoiLinkDirection

public String getRoiLinkDirection(int arg0,
                                  int arg1,
                                  int arg2)
Specified by:
getRoiLinkDirection in interface loci.formats.meta.MetadataRetrieve

getRoiLinkName

public String getRoiLinkName(int arg0,
                             int arg1,
                             int arg2)
Specified by:
getRoiLinkName in interface loci.formats.meta.MetadataRetrieve

getRoiLinkRef

public String getRoiLinkRef(int arg0,
                            int arg1,
                            int arg2)
Specified by:
getRoiLinkRef in interface loci.formats.meta.MetadataRetrieve

getGroupID

public String getGroupID(int arg0)
Specified by:
getGroupID in interface loci.formats.meta.MetadataRetrieve


OmeroJava Api

Version: Beta-4.1.1-r5927-b91

Copyright © 2009 The University of Dundee. All Rights Reserved.