ome.services.blitz.impl
Class OmeroMetadata
java.lang.Object
ome.services.blitz.impl.OmeroMetadata
- All Implemented Interfaces:
- loci.formats.meta.MetadataRetrieve
public class OmeroMetadata
- extends Object
- implements loci.formats.meta.MetadataRetrieve
An implementation for MetadataStore
and MetadataRetrieve
that
knows how to read and write the OMERO object model.
- Author:
- Josh Moore josh at glencoesoftware.com, Chris Allan callan at blackcat.ca, Curtis Rueden ctrueden at wisc.edu
Method Summary |
void |
addImage(omero.model.Image image)
|
String |
getArcType(int idxInstrument,
int idxLightSource)
|
String |
getChannelComponentColorDomain(int idxImage,
int idxLogicalChannel,
int idxChannelComponent)
|
int |
getChannelComponentCount(int idxImage,
int idxLogicalChannel)
|
Integer |
getChannelComponentIndex(int idxImage,
int idxLogicalChannel,
int idxChannelComponent)
|
String |
getChannelComponentPixels(int idxImage,
int idxLogicalChannel,
int idxChannelComponent)
|
String |
getCircleCx(int idxImage,
int idxROI,
int idxShape)
|
String |
getCircleCy(int idxImage,
int idxROI,
int idxShape)
|
String |
getCircleID(int idxImage,
int idxROI,
int idxShape)
|
String |
getCircleR(int idxImage,
int idxROI,
int idxShape)
|
String |
getCircleTransform(int idxImage,
int idxROI,
int idxShape)
|
String |
getContactExperimenter(int idxGroup)
|
int |
getDatasetCount()
|
String |
getDatasetDescription(int idxDataset)
|
String |
getDatasetExperimenterRef(int idxDataset)
|
String |
getDatasetGroupRef(int idxDataset)
|
String |
getDatasetID(int idxDataset)
|
Boolean |
getDatasetLocked(int idxDataset)
|
String |
getDatasetName(int idxDataset)
|
int |
getDatasetRefCount(int idxImage)
|
String |
getDatasetRefID(int idxImage,
int idxDatasetRef)
|
Float |
getDetectorAmplificationGain(int idxInstrument,
int idxDetector)
|
int |
getDetectorCount(int idxInstrument)
|
Float |
getDetectorGain(int idxInstrument,
int idxDetector)
|
String |
getDetectorID(int idxInstrument,
int idxDetector)
|
String |
getDetectorManufacturer(int idxInstrument,
int idxDetector)
|
String |
getDetectorModel(int idxInstrument,
int idxDetector)
|
Float |
getDetectorOffset(int idxInstrument,
int idxDetector)
|
String |
getDetectorSerialNumber(int idxInstrument,
int idxDetector)
|
String |
getDetectorSettingsBinning(int imageIndex,
int logicalChannelIndex)
|
String |
getDetectorSettingsDetector(int imageIndex,
int logicalChannelIndex)
|
Float |
getDetectorSettingsGain(int imageIndex,
int logicalChannelIndex)
|
Float |
getDetectorSettingsOffset(int imageIndex,
int logicalChannelIndex)
|
Float |
getDetectorSettingsReadOutRate(int imageIndex,
int logicalChannelIndex)
|
Float |
getDetectorSettingsVoltage(int imageIndex,
int logicalChannelIndex)
|
String |
getDetectorType(int idxInstrument,
int idxDetector)
|
Float |
getDetectorVoltage(int idxInstrument,
int idxDetector)
|
Float |
getDetectorZoom(int idxInstrument,
int idxDetector)
|
int |
getDichroicCount(int idxInstrument)
|
String |
getDichroicID(int arg0,
int arg1)
|
String |
getDichroicLotNumber(int idxInstrument,
int idxDichroic)
|
String |
getDichroicManufacturer(int idxInstrument,
int idxDichroic)
|
String |
getDichroicModel(int idxInstrument,
int idxDichroic)
|
Float |
getDimensionsPhysicalSizeX(int imageIndex,
int pixelsIndex)
|
Float |
getDimensionsPhysicalSizeY(int imageIndex,
int pixelsIndex)
|
Float |
getDimensionsPhysicalSizeZ(int imageIndex,
int pixelsIndex)
|
Float |
getDimensionsTimeIncrement(int imageIndex,
int pixelsIndex)
|
Integer |
getDimensionsWaveIncrement(int imageIndex,
int pixelsIndex)
|
Integer |
getDimensionsWaveStart(int imageIndex,
int pixelsIndex)
|
String |
getDisplayOptionsDisplay(int idxImage)
|
String |
getDisplayOptionsID(int idxImage)
|
Integer |
getDisplayOptionsProjectionZStart(int imageIndex)
|
Integer |
getDisplayOptionsProjectionZStop(int imageIndex)
|
Integer |
getDisplayOptionsTimeTStart(int imageIndex)
|
Integer |
getDisplayOptionsTimeTStop(int imageIndex)
|
Float |
getDisplayOptionsZoom(int idxImage)
|
String |
getEllipseCx(int idxImage,
int idxROI,
int idxShape)
|
String |
getEllipseCy(int idxImage,
int idxROI,
int idxShape)
|
String |
getEllipseID(int idxImage,
int idxROI,
int idxShape)
|
String |
getEllipseRx(int idxImage,
int idxROI,
int idxShape)
|
String |
getEllipseRy(int idxImage,
int idxROI,
int idxShape)
|
String |
getEllipseTransform(int idxImage,
int idxROI,
int idxShape)
|
String |
getEmFilterLotNumber(int instrumentIndex,
int filterIndex)
|
String |
getEmFilterManufacturer(int instrumentIndex,
int filterIndex)
|
String |
getEmFilterModel(int instrumentIndex,
int filterIndex)
|
String |
getEmFilterType(int instrumentIndex,
int filterIndex)
|
String |
getExFilterLotNumber(int instrumentIndex,
int filterIndex)
|
String |
getExFilterManufacturer(int instrumentIndex,
int filterIndex)
|
String |
getExFilterModel(int instrumentIndex,
int filterIndex)
|
String |
getExFilterType(int instrumentIndex,
int filterIndex)
|
int |
getExperimentCount()
|
String |
getExperimentDescription(int idxExperiment)
|
int |
getExperimenterCount()
|
String |
getExperimenterEmail(int idxExperimenter)
|
String |
getExperimenterFirstName(int idxExperimenter)
|
String |
getExperimenterID(int idxExperimenter)
|
String |
getExperimenterInstitution(int idxExperimenter)
|
String |
getExperimenterLastName(int idxExperimenter)
|
int |
getExperimenterMembershipCount(int experimenterIndex)
|
String |
getExperimenterMembershipGroup(int experimenterIndex,
int groupRefIndex)
|
String |
getExperimenterOMEName(int idxExperimenter)
|
String |
getExperimentExperimenterRef(int idxExperiment)
|
String |
getExperimentID(int idxExperiment)
|
String |
getExperimentType(int idxExperiment)
|
String |
getFilamentType(int idxInstrument,
int idxLightSource)
|
int |
getFilterCount(int idxInstrument)
|
String |
getFilterFilterWheel(int idxInstrument,
int idxFilter)
|
String |
getFilterID(int arg0,
int arg1)
|
String |
getFilterLotNumber(int idxInstrument,
int idxFilter)
|
String |
getFilterManufacturer(int idxInstrument,
int idxFilter)
|
String |
getFilterModel(int idxInstrument,
int idxFilter)
|
int |
getFilterSetCount(int idxInstrument)
|
String |
getFilterSetDichroic(int idxInstrument,
int idxFilterSet)
|
String |
getFilterSetEmFilter(int idxInstrument,
int idxFilterSet)
|
String |
getFilterSetExFilter(int idxInstrument,
int idxFilterSet)
|
String |
getFilterSetID(int arg0,
int arg1)
|
String |
getFilterSetLotNumber(int idxInstrument,
int idxFilterSet)
|
String |
getFilterSetManufacturer(int idxInstrument,
int idxFilterSet)
|
String |
getFilterSetModel(int idxInstrument,
int idxFilterSet)
|
String |
getFilterType(int idxInstrument,
int idxFilter)
|
Float |
getGreyChannelBlackLevel(int idxImage)
|
Integer |
getGreyChannelChannelNumber(int idxImage)
|
Float |
getGreyChannelGamma(int idxImage)
|
Boolean |
getGreyChannelisOn(int idxImage)
|
String |
getGreyChannelMapColorMap(int imageIndex)
|
Float |
getGreyChannelWhiteLevel(int idxImage)
|
int |
getGroupCount()
|
String |
getGroupID(int arg0)
|
String |
getGroupName(int idxGroup)
|
int |
getGroupRefCount(int idxExperimenter)
|
omero.model.Image |
getImage(int i)
|
String |
getImageAcquiredPixels(int idxImage)
|
int |
getImageCount()
|
String |
getImageCreationDate(int idxImage)
|
String |
getImageDefaultPixels(int idxImage)
|
String |
getImageDescription(int idxImage)
|
String |
getImageExperimenterRef(int idxImage)
|
String |
getImageExperimentRef(int idxImage)
|
String |
getImageGroupRef(int idxImage)
|
String |
getImageID(int idxImage)
|
String |
getImageInstrumentRef(int idxImage)
|
String |
getImageName(int idxImage)
|
String |
getImageObjective(int idxImage)
|
Float |
getImagingEnvironmentAirPressure(int idxImage)
|
Float |
getImagingEnvironmentCO2Percent(int idxImage)
|
Float |
getImagingEnvironmentHumidity(int idxImage)
|
Float |
getImagingEnvironmentTemperature(int idxImage)
|
int |
getInstrumentCount()
|
String |
getInstrumentID(int idxInstrument)
|
Integer |
getLaserFrequencyMultiplication(int idxInstrument,
int idxLightSource)
|
String |
getLaserLaserMedium(int idxInstrument,
int idxLightSource)
|
Boolean |
getLaserPockelCell(int idxInstrument,
int idxLightSource)
|
String |
getLaserPulse(int idxInstrument,
int idxLightSource)
|
Boolean |
getLaserRepetitionRate(int idxInstrument,
int idxLightSource)
|
Boolean |
getLaserTuneable(int idxInstrument,
int idxLightSource)
|
String |
getLaserType(int idxInstrument,
int idxLightSource)
|
Integer |
getLaserWavelength(int idxInstrument,
int idxLightSource)
|
int |
getLightSourceCount(int idxInstrument)
|
String |
getLightSourceID(int idxInstrument,
int idxLightSource)
|
String |
getLightSourceManufacturer(int idxInstrument,
int idxLightSource)
|
String |
getLightSourceModel(int idxInstrument,
int idxLightSource)
|
Float |
getLightSourcePower(int idxInstrument,
int idxLightSource)
|
Float |
getLightSourceRefAttenuation(int idxImage,
int idxMicrobeamManipulation,
int idxLightSourceRef)
|
int |
getLightSourceRefCount(int idxImage,
int idxMicrobeamManipulation)
|
String |
getLightSourceRefLightSource(int idxImage,
int idxMicrobeamManipulation,
int idxLightSourceRef)
|
Integer |
getLightSourceRefWavelength(int idxImage,
int idxMicrobeamManipulation,
int idxLightSourceRef)
|
String |
getLightSourceSerialNumber(int idxInstrument,
int idxLightSource)
|
Float |
getLightSourceSettingsAttenuation(int imageIndex,
int logicalChannelIndex)
|
String |
getLightSourceSettingsLightSource(int imageIndex,
int logicalChannelIndex)
|
Integer |
getLightSourceSettingsWavelength(int imageIndex,
int logicalChannelIndex)
|
String |
getLineID(int idxImage,
int idxROI,
int idxShape)
|
String |
getLineTransform(int idxImage,
int idxROI,
int idxShape)
|
String |
getLineX1(int idxImage,
int idxROI,
int idxShape)
|
String |
getLineX2(int idxImage,
int idxROI,
int idxShape)
|
String |
getLineY1(int idxImage,
int idxROI,
int idxShape)
|
String |
getLineY2(int idxImage,
int idxROI,
int idxShape)
|
String |
getLogicalChannelContrastMethod(int idxImage,
int idxLogicalChannel)
|
int |
getLogicalChannelCount(int idxImage)
|
String |
getLogicalChannelDetector(int idxImage,
int idxLogicalChannel)
|
Integer |
getLogicalChannelEmWave(int idxImage,
int idxLogicalChannel)
|
Integer |
getLogicalChannelExWave(int idxImage,
int idxLogicalChannel)
|
String |
getLogicalChannelFilterSet(int idxImage,
int idxLogicalChannel)
|
String |
getLogicalChannelFluor(int idxImage,
int idxLogicalChannel)
|
String |
getLogicalChannelID(int idxImage,
int idxLogicalChannel)
|
String |
getLogicalChannelIlluminationType(int idxImage,
int idxLogicalChannel)
|
String |
getLogicalChannelLightSource(int idxImage,
int idxLogicalChannel)
|
String |
getLogicalChannelMode(int idxImage,
int idxLogicalChannel)
|
String |
getLogicalChannelName(int idxImage,
int idxLogicalChannel)
|
Float |
getLogicalChannelNdFilter(int idxImage,
int idxLogicalChannel)
|
String |
getLogicalChannelOTF(int idxImage,
int idxLogicalChannel)
|
String |
getLogicalChannelPhotometricInterpretation(int idxImage,
int idxLogicalChannel)
|
Float |
getLogicalChannelPinholeSize(int idxImage,
int idxLogicalChannel)
|
Integer |
getLogicalChannelPockelCellSetting(int idxImage,
int idxLogicalChannel)
|
Integer |
getLogicalChannelSamplesPerPixel(int idxImage,
int idxLogicalChannel)
|
String |
getLogicalChannelSecondaryEmissionFilter(int idxImage,
int idxLogicalChannel)
|
String |
getLogicalChannelSecondaryExcitationFilter(int idxImage,
int idxLogicalChannel)
|
String |
getMaskHeight(int idxImage,
int idxROI,
int idxShape)
|
String |
getMaskID(int idxImage,
int idxROI,
int idxShape)
|
Boolean |
getMaskPixelsBigEndian(int idxImage,
int idxROI,
int idxShape)
|
byte[] |
getMaskPixelsBinData(int idxImage,
int idxROI,
int idxShape)
|
String |
getMaskPixelsExtendedPixelType(int idxImage,
int idxROI,
int idxShape)
|
String |
getMaskPixelsID(int idxImage,
int idxROI,
int idxShape)
|
Integer |
getMaskPixelsSizeX(int idxImage,
int idxROI,
int idxShape)
|
Integer |
getMaskPixelsSizeY(int idxImage,
int idxROI,
int idxShape)
|
String |
getMaskTransform(int idxImage,
int idxROI,
int idxShape)
|
String |
getMaskWidth(int idxImage,
int idxROI,
int idxShape)
|
String |
getMaskX(int idxImage,
int idxROI,
int idxShape)
|
String |
getMaskY(int idxImage,
int idxROI,
int idxShape)
|
int |
getMicrobeamManipulationCount(int idxImage)
|
String |
getMicrobeamManipulationExperimenterRef(int idxImage,
int idxMicrobeamManipulation)
|
String |
getMicrobeamManipulationID(int idxImage,
int idxMicrobeamManipulation)
|
int |
getMicrobeamManipulationRefCount(int idxExperiment)
|
String |
getMicrobeamManipulationRefID(int idxExperiment,
int idxMicrobeamManipulationRef)
|
String |
getMicrobeamManipulationType(int idxImage,
int idxMicrobeamManipulation)
|
String |
getMicroscopeID(int idxInstrument)
|
String |
getMicroscopeManufacturer(int idxInstrument)
|
String |
getMicroscopeModel(int idxInstrument)
|
String |
getMicroscopeSerialNumber(int idxInstrument)
|
String |
getMicroscopeType(int idxInstrument)
|
Float |
getObjectiveCalibratedMagnification(int idxInstrument,
int idxObjective)
|
String |
getObjectiveCorrection(int idxInstrument,
int idxObjective)
|
int |
getObjectiveCount(int idxInstrument)
|
String |
getObjectiveID(int idxInstrument,
int idxObjective)
|
String |
getObjectiveImmersion(int idxInstrument,
int idxObjective)
|
Boolean |
getObjectiveIris(int idxInstrument,
int idxObjective)
|
Float |
getObjectiveLensNA(int idxInstrument,
int idxObjective)
|
String |
getObjectiveManufacturer(int idxInstrument,
int idxObjective)
|
String |
getObjectiveModel(int idxInstrument,
int idxObjective)
|
Integer |
getObjectiveNominalMagnification(int idxInstrument,
int idxObjective)
|
String |
getObjectiveSerialNumber(int idxInstrument,
int idxObjective)
|
Float |
getObjectiveSettingsCorrectionCollar(int imageIndex)
|
String |
getObjectiveSettingsMedium(int imageIndex)
|
String |
getObjectiveSettingsObjective(int imageIndex)
|
Float |
getObjectiveSettingsRefractiveIndex(int imageIndex)
|
Float |
getObjectiveWorkingDistance(int idxInstrument,
int idxObjective)
|
String |
getOTFBinaryFile(int idxInstrument,
int idxOTF)
|
int |
getOTFCount(int idxInstrument)
|
String |
getOTFID(int idxInstrument,
int idxOTF)
|
String |
getOTFObjective(int idxInstrument,
int idxOTF)
|
Boolean |
getOTFOpticalAxisAveraged(int idxInstrument,
int idxOTF)
|
String |
getOTFPixelType(int idxInstrument,
int idxOTF)
|
Integer |
getOTFSizeX(int idxInstrument,
int idxOTF)
|
Integer |
getOTFSizeY(int idxInstrument,
int idxOTF)
|
String |
getPathD(int imageIndex,
int roiIndex,
int shapeIndex)
|
String |
getPathID(int imageIndex,
int roiIndex,
int shapeIndex)
|
Boolean |
getPixelsBigEndian(int idxImage,
int idxPixels)
|
int |
getPixelsCount(int idxImage)
|
String |
getPixelsDimensionOrder(int idxImage,
int idxPixels)
|
String |
getPixelsID(int idxImage,
int idxPixels)
|
String |
getPixelsPixelType(int idxImage,
int idxPixels)
|
Integer |
getPixelsSizeC(int idxImage,
int idxPixels)
|
Integer |
getPixelsSizeT(int idxImage,
int idxPixels)
|
Integer |
getPixelsSizeX(int idxImage,
int idxPixels)
|
Integer |
getPixelsSizeY(int idxImage,
int idxPixels)
|
Integer |
getPixelsSizeZ(int idxImage,
int idxPixels)
|
int |
getPlaneCount(int idxImage,
int idxPixels)
|
String |
getPlaneHashSHA1(int idxImage,
int idxPixels,
int idxPlane)
|
String |
getPlaneID(int idxImage,
int idxPixels,
int idxPlane)
|
Integer |
getPlaneTheC(int idxImage,
int idxPixels,
int idxPlane)
|
Integer |
getPlaneTheT(int idxImage,
int idxPixels,
int idxPlane)
|
Integer |
getPlaneTheZ(int idxImage,
int idxPixels,
int idxPlane)
|
Float |
getPlaneTimingDeltaT(int idxImage,
int idxPixels,
int idxPlane)
|
Float |
getPlaneTimingExposureTime(int idxImage,
int idxPixels,
int idxPlane)
|
String |
getPlateColumnNamingConvention(int idxPlate)
|
int |
getPlateCount()
|
String |
getPlateDescription(int idxPlate)
|
String |
getPlateExternalIdentifier(int idxPlate)
|
String |
getPlateID(int idxPlate)
|
String |
getPlateName(int idxPlate)
|
int |
getPlateRefCount(int idxScreen)
|
String |
getPlateRefID(int idxScreen,
int idxPlateRef)
|
Integer |
getPlateRefSample(int idxScreen,
int idxPlateRef)
|
String |
getPlateRefWell(int idxScreen,
int idxPlateRef)
|
String |
getPlateRowNamingConvention(int idxPlate)
|
String |
getPlateStatus(int idxPlate)
|
Double |
getPlateWellOriginX(int idxPlate)
|
Double |
getPlateWellOriginY(int idxPlate)
|
String |
getPointCx(int idxImage,
int idxROI,
int idxShape)
|
String |
getPointCy(int idxImage,
int idxROI,
int idxShape)
|
String |
getPointID(int idxImage,
int idxROI,
int idxShape)
|
String |
getPointR(int idxImage,
int idxROI,
int idxShape)
|
String |
getPointTransform(int idxImage,
int idxROI,
int idxShape)
|
String |
getPolygonID(int idxImage,
int idxROI,
int idxShape)
|
String |
getPolygonPoints(int idxImage,
int idxROI,
int idxShape)
|
String |
getPolygonTransform(int idxImage,
int idxROI,
int idxShape)
|
String |
getPolylineID(int idxImage,
int idxROI,
int idxShape)
|
String |
getPolylinePoints(int idxImage,
int idxROI,
int idxShape)
|
String |
getPolylineTransform(int idxImage,
int idxROI,
int idxShape)
|
int |
getProjectCount()
|
String |
getProjectDescription(int idxProject)
|
String |
getProjectExperimenterRef(int idxProject)
|
String |
getProjectGroupRef(int idxProject)
|
String |
getProjectID(int idxProject)
|
String |
getProjectName(int idxProject)
|
int |
getProjectRefCount(int idxDataset)
|
String |
getProjectRefID(int idxDataset,
int idxProjectRef)
|
String |
getPumpLightSource(int idxInstrument,
int idxLightSource)
|
int |
getReagentCount(int idxScreen)
|
String |
getReagentDescription(int idxScreen,
int idxReagent)
|
String |
getReagentID(int idxScreen,
int idxReagent)
|
String |
getReagentName(int idxScreen,
int idxReagent)
|
String |
getReagentReagentIdentifier(int idxScreen,
int idxReagent)
|
String |
getRectHeight(int idxImage,
int idxROI,
int idxShape)
|
String |
getRectID(int idxImage,
int idxROI,
int idxShape)
|
String |
getRectTransform(int idxImage,
int idxROI,
int idxShape)
|
String |
getRectWidth(int idxImage,
int idxROI,
int idxShape)
|
String |
getRectX(int idxImage,
int idxROI,
int idxShape)
|
String |
getRectY(int idxImage,
int idxROI,
int idxShape)
|
int |
getRegionCount(int idxImage)
|
String |
getRegionID(int idxImage,
int idxRegion)
|
String |
getRegionName(int idxImage,
int idxRegion)
|
String |
getRegionTag(int idxImage,
int idxRegion)
|
int |
getROICount(int idxImage)
|
String |
getROIID(int idxImage,
int idxROI)
|
int |
getRoiLinkCount(int arg0,
int arg1)
|
String |
getRoiLinkDirection(int arg0,
int arg1,
int arg2)
|
String |
getRoiLinkName(int arg0,
int arg1,
int arg2)
|
String |
getRoiLinkRef(int arg0,
int arg1,
int arg2)
|
int |
getROIRefCount(int idxImage,
int idxMicrobeamManipulation)
|
String |
getROIRefID(int idxImage,
int idxMicrobeamManipulation,
int idxROIRef)
|
Integer |
getROIT0(int idxImage,
int idxROI)
|
Integer |
getROIT1(int idxImage,
int idxROI)
|
Integer |
getROIX0(int idxImage,
int idxROI)
|
Integer |
getROIX1(int idxImage,
int idxROI)
|
Integer |
getROIY0(int idxImage,
int idxROI)
|
Integer |
getROIY1(int idxImage,
int idxROI)
|
Integer |
getROIZ0(int idxImage,
int idxROI)
|
Integer |
getROIZ1(int idxImage,
int idxROI)
|
int |
getScreenAcquisitionCount(int idxScreen)
|
String |
getScreenAcquisitionEndTime(int idxScreen,
int idxScreenAcquisition)
|
String |
getScreenAcquisitionID(int idxScreen,
int idxScreenAcquisition)
|
String |
getScreenAcquisitionStartTime(int idxScreen,
int idxScreenAcquisition)
|
int |
getScreenCount()
|
String |
getScreenDescription(int idxScreen)
|
String |
getScreenExtern(int idxScreen)
|
String |
getScreenID(int idxScreen)
|
String |
getScreenName(int idxScreen)
|
String |
getScreenProtocolDescription(int idxScreen)
|
String |
getScreenProtocolIdentifier(int idxScreen)
|
String |
getScreenReagentSetDescription(int idxScreen)
|
String |
getScreenReagentSetIdentifier(int idxScreen)
|
int |
getScreenRefCount(int idxPlate)
|
String |
getScreenRefID(int idxPlate,
int idxScreenRef)
|
String |
getScreenType(int idxScreen)
|
String |
getShapeBaselineShift(int idxImage,
int idxROI,
int idxShape)
|
int |
getShapeCount(int idxImage,
int idxROI)
|
String |
getShapeDirection(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeFillColor(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeFillOpacity(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeFillRule(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeFontFamily(int idxImage,
int idxROI,
int idxShape)
|
Integer |
getShapeFontSize(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeFontStretch(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeFontStyle(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeFontVariant(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeFontWeight(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeG(int idxImage,
int idxROI,
int idxShape)
|
Integer |
getShapeGlyphOrientationVertical(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeID(int idxImage,
int idxROI,
int idxShape)
|
Boolean |
getShapeLocked(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeStrokeAttribute(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeStrokeColor(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeStrokeDashArray(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeStrokeLineCap(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeStrokeLineJoin(int idxImage,
int idxROI,
int idxShape)
|
Integer |
getShapeStrokeMiterLimit(int idxImage,
int idxROI,
int idxShape)
|
Float |
getShapeStrokeOpacity(int idxImage,
int idxROI,
int idxShape)
|
Integer |
getShapeStrokeWidth(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeText(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeTextAnchor(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeTextDecoration(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeTextFill(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeTextStroke(int idxImage,
int idxROI,
int idxShape)
|
Integer |
getShapeTheT(int idxImage,
int idxROI,
int idxShape)
|
Integer |
getShapeTheZ(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeVectorEffect(int idxImage,
int idxROI,
int idxShape)
|
Boolean |
getShapeVisibility(int idxImage,
int idxROI,
int idxShape)
|
String |
getShapeWritingMode(int idxImage,
int idxROI,
int idxShape)
|
String |
getStageLabelName(int idxImage)
|
Float |
getStageLabelX(int idxImage)
|
Float |
getStageLabelY(int idxImage)
|
Float |
getStageLabelZ(int idxImage)
|
Float |
getStagePositionPositionX(int idxImage,
int idxPixels,
int idxPlane)
|
Float |
getStagePositionPositionY(int idxImage,
int idxPixels,
int idxPlane)
|
Float |
getStagePositionPositionZ(int idxImage,
int idxPixels,
int idxPlane)
|
String |
getThumbnailHref(int idxImage)
|
String |
getThumbnailID(int idxImage)
|
String |
getThumbnailMIMEtype(int idxImage)
|
int |
getTiffDataCount(int idxImage,
int idxPixels)
|
String |
getTiffDataFileName(int idxImage,
int idxPixels,
int idxTiffData)
|
Integer |
getTiffDataFirstC(int idxImage,
int idxPixels,
int idxTiffData)
|
Integer |
getTiffDataFirstT(int idxImage,
int idxPixels,
int idxTiffData)
|
Integer |
getTiffDataFirstZ(int idxImage,
int idxPixels,
int idxTiffData)
|
Integer |
getTiffDataIFD(int idxImage,
int idxPixels,
int idxTiffData)
|
Integer |
getTiffDataNumPlanes(int idxImage,
int idxPixels,
int idxTiffData)
|
String |
getTiffDataUUID(int idxImage,
int idxPixels,
int idxTiffData)
|
Integer |
getTransmittanceRangeCutIn(int idxInstrument,
int idxFilter)
|
Integer |
getTransmittanceRangeCutInTolerance(int idxInstrument,
int idxFilter)
|
Integer |
getTransmittanceRangeCutOut(int idxInstrument,
int idxFilter)
|
Integer |
getTransmittanceRangeCutOutTolerance(int idxInstrument,
int idxFilter)
|
Integer |
getTransmittanceRangeTransmittance(int idxInstrument,
int idxFilter)
|
String |
getUUID()
|
Integer |
getWellColumn(int idxPlate,
int idxWell)
|
int |
getWellCount(int idxPlate)
|
String |
getWellExternalDescription(int idxPlate,
int idxWell)
|
String |
getWellExternalIdentifier(int idxPlate,
int idxWell)
|
String |
getWellID(int idxPlate,
int idxWell)
|
String |
getWellReagent(int idxPlate,
int idxWell)
|
Integer |
getWellRow(int idxPlate,
int idxWell)
|
int |
getWellSampleCount(int idxPlate,
int idxWell)
|
String |
getWellSampleID(int idxPlate,
int idxWell,
int idxWellSample)
|
String |
getWellSampleImageRef(int idxPlate,
int idxWell,
int idxWellSample)
|
Integer |
getWellSampleIndex(int idxPlate,
int idxWell,
int idxWellSample)
|
Float |
getWellSamplePosX(int idxPlate,
int idxWell,
int idxWellSample)
|
Float |
getWellSamplePosY(int idxPlate,
int idxWell,
int idxWellSample)
|
int |
getWellSampleRefCount(int idxScreen,
int idxScreenAcquisition)
|
String |
getWellSampleRefID(int idxScreen,
int idxScreenAcquisition,
int idxWellSampleRef)
|
Integer |
getWellSampleTimepoint(int idxPlate,
int idxWell,
int idxWellSample)
|
String |
getWellType(int idxPlate,
int idxWell)
|
String |
handleLsid(omero.model.IObject obj)
|
void |
initialize(org.hibernate.Session session)
|
int |
sizeImages()
|
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
OmeroMetadata
public OmeroMetadata(DatabaseIdentity db)
addImage
public void addImage(omero.model.Image image)
getImage
public omero.model.Image getImage(int i)
sizeImages
public int sizeImages()
handleLsid
public String handleLsid(omero.model.IObject obj)
initialize
public void initialize(org.hibernate.Session session)
getUUID
public String getUUID()
- Specified by:
getUUID
in interface loci.formats.meta.MetadataRetrieve
getDatasetCount
public int getDatasetCount()
- Specified by:
getDatasetCount
in interface loci.formats.meta.MetadataRetrieve
getScreenRefCount
public int getScreenRefCount(int idxPlate)
- Specified by:
getScreenRefCount
in interface loci.formats.meta.MetadataRetrieve
getProjectRefCount
public int getProjectRefCount(int idxDataset)
- Specified by:
getProjectRefCount
in interface loci.formats.meta.MetadataRetrieve
getProjectCount
public int getProjectCount()
- Specified by:
getProjectCount
in interface loci.formats.meta.MetadataRetrieve
getGroupCount
public int getGroupCount()
- Specified by:
getGroupCount
in interface loci.formats.meta.MetadataRetrieve
getPixelsCount
public int getPixelsCount(int idxImage)
- Specified by:
getPixelsCount
in interface loci.formats.meta.MetadataRetrieve
getGroupRefCount
public int getGroupRefCount(int idxExperimenter)
- Specified by:
getGroupRefCount
in interface loci.formats.meta.MetadataRetrieve
getPlateRefCount
public int getPlateRefCount(int idxScreen)
- Specified by:
getPlateRefCount
in interface loci.formats.meta.MetadataRetrieve
getWellSampleCount
public int getWellSampleCount(int idxPlate,
int idxWell)
- Specified by:
getWellSampleCount
in interface loci.formats.meta.MetadataRetrieve
getRegionCount
public int getRegionCount(int idxImage)
- Specified by:
getRegionCount
in interface loci.formats.meta.MetadataRetrieve
getWellSampleRefCount
public int getWellSampleRefCount(int idxScreen,
int idxScreenAcquisition)
- Specified by:
getWellSampleRefCount
in interface loci.formats.meta.MetadataRetrieve
getPlateCount
public int getPlateCount()
- Specified by:
getPlateCount
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelCount
public int getLogicalChannelCount(int idxImage)
- Specified by:
getLogicalChannelCount
in interface loci.formats.meta.MetadataRetrieve
getDichroicCount
public int getDichroicCount(int idxInstrument)
- Specified by:
getDichroicCount
in interface loci.formats.meta.MetadataRetrieve
getReagentCount
public int getReagentCount(int idxScreen)
- Specified by:
getReagentCount
in interface loci.formats.meta.MetadataRetrieve
getROIRefCount
public int getROIRefCount(int idxImage,
int idxMicrobeamManipulation)
- Specified by:
getROIRefCount
in interface loci.formats.meta.MetadataRetrieve
getInstrumentCount
public int getInstrumentCount()
- Specified by:
getInstrumentCount
in interface loci.formats.meta.MetadataRetrieve
getExperimenterCount
public int getExperimenterCount()
- Specified by:
getExperimenterCount
in interface loci.formats.meta.MetadataRetrieve
getDetectorCount
public int getDetectorCount(int idxInstrument)
- Specified by:
getDetectorCount
in interface loci.formats.meta.MetadataRetrieve
getLightSourceCount
public int getLightSourceCount(int idxInstrument)
- Specified by:
getLightSourceCount
in interface loci.formats.meta.MetadataRetrieve
getExperimentCount
public int getExperimentCount()
- Specified by:
getExperimentCount
in interface loci.formats.meta.MetadataRetrieve
getScreenAcquisitionCount
public int getScreenAcquisitionCount(int idxScreen)
- Specified by:
getScreenAcquisitionCount
in interface loci.formats.meta.MetadataRetrieve
getChannelComponentCount
public int getChannelComponentCount(int idxImage,
int idxLogicalChannel)
- Specified by:
getChannelComponentCount
in interface loci.formats.meta.MetadataRetrieve
getScreenCount
public int getScreenCount()
- Specified by:
getScreenCount
in interface loci.formats.meta.MetadataRetrieve
getObjectiveCount
public int getObjectiveCount(int idxInstrument)
- Specified by:
getObjectiveCount
in interface loci.formats.meta.MetadataRetrieve
getDatasetRefCount
public int getDatasetRefCount(int idxImage)
- Specified by:
getDatasetRefCount
in interface loci.formats.meta.MetadataRetrieve
getMicrobeamManipulationRefCount
public int getMicrobeamManipulationRefCount(int idxExperiment)
- Specified by:
getMicrobeamManipulationRefCount
in interface loci.formats.meta.MetadataRetrieve
getLightSourceRefCount
public int getLightSourceRefCount(int idxImage,
int idxMicrobeamManipulation)
- Specified by:
getLightSourceRefCount
in interface loci.formats.meta.MetadataRetrieve
getFilterCount
public int getFilterCount(int idxInstrument)
- Specified by:
getFilterCount
in interface loci.formats.meta.MetadataRetrieve
getMicrobeamManipulationCount
public int getMicrobeamManipulationCount(int idxImage)
- Specified by:
getMicrobeamManipulationCount
in interface loci.formats.meta.MetadataRetrieve
getImageCount
public int getImageCount()
- Specified by:
getImageCount
in interface loci.formats.meta.MetadataRetrieve
getROICount
public int getROICount(int idxImage)
- Specified by:
getROICount
in interface loci.formats.meta.MetadataRetrieve
getShapeCount
public int getShapeCount(int idxImage,
int idxROI)
- Specified by:
getShapeCount
in interface loci.formats.meta.MetadataRetrieve
getTiffDataCount
public int getTiffDataCount(int idxImage,
int idxPixels)
- Specified by:
getTiffDataCount
in interface loci.formats.meta.MetadataRetrieve
getFilterSetCount
public int getFilterSetCount(int idxInstrument)
- Specified by:
getFilterSetCount
in interface loci.formats.meta.MetadataRetrieve
getWellCount
public int getWellCount(int idxPlate)
- Specified by:
getWellCount
in interface loci.formats.meta.MetadataRetrieve
getPlaneCount
public int getPlaneCount(int idxImage,
int idxPixels)
- Specified by:
getPlaneCount
in interface loci.formats.meta.MetadataRetrieve
getOTFCount
public int getOTFCount(int idxInstrument)
- Specified by:
getOTFCount
in interface loci.formats.meta.MetadataRetrieve
getMaskPixelsExtendedPixelType
public String getMaskPixelsExtendedPixelType(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getMaskPixelsExtendedPixelType
in interface loci.formats.meta.MetadataRetrieve
getMaskPixelsSizeX
public Integer getMaskPixelsSizeX(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getMaskPixelsSizeX
in interface loci.formats.meta.MetadataRetrieve
getMaskPixelsSizeY
public Integer getMaskPixelsSizeY(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getMaskPixelsSizeY
in interface loci.formats.meta.MetadataRetrieve
getMaskPixelsBigEndian
public Boolean getMaskPixelsBigEndian(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getMaskPixelsBigEndian
in interface loci.formats.meta.MetadataRetrieve
getMaskPixelsBinData
public byte[] getMaskPixelsBinData(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getMaskPixelsBinData
in interface loci.formats.meta.MetadataRetrieve
getMaskPixelsID
public String getMaskPixelsID(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getMaskPixelsID
in interface loci.formats.meta.MetadataRetrieve
getDatasetLocked
public Boolean getDatasetLocked(int idxDataset)
- Specified by:
getDatasetLocked
in interface loci.formats.meta.MetadataRetrieve
getDatasetDescription
public String getDatasetDescription(int idxDataset)
- Specified by:
getDatasetDescription
in interface loci.formats.meta.MetadataRetrieve
getDatasetExperimenterRef
public String getDatasetExperimenterRef(int idxDataset)
- Specified by:
getDatasetExperimenterRef
in interface loci.formats.meta.MetadataRetrieve
getDatasetGroupRef
public String getDatasetGroupRef(int idxDataset)
- Specified by:
getDatasetGroupRef
in interface loci.formats.meta.MetadataRetrieve
getDatasetID
public String getDatasetID(int idxDataset)
- Specified by:
getDatasetID
in interface loci.formats.meta.MetadataRetrieve
getDatasetName
public String getDatasetName(int idxDataset)
- Specified by:
getDatasetName
in interface loci.formats.meta.MetadataRetrieve
getPumpLightSource
public String getPumpLightSource(int idxInstrument,
int idxLightSource)
- Specified by:
getPumpLightSource
in interface loci.formats.meta.MetadataRetrieve
getScreenRefID
public String getScreenRefID(int idxPlate,
int idxScreenRef)
- Specified by:
getScreenRefID
in interface loci.formats.meta.MetadataRetrieve
getProjectRefID
public String getProjectRefID(int idxDataset,
int idxProjectRef)
- Specified by:
getProjectRefID
in interface loci.formats.meta.MetadataRetrieve
getProjectExperimenterRef
public String getProjectExperimenterRef(int idxProject)
- Specified by:
getProjectExperimenterRef
in interface loci.formats.meta.MetadataRetrieve
getProjectID
public String getProjectID(int idxProject)
- Specified by:
getProjectID
in interface loci.formats.meta.MetadataRetrieve
getProjectGroupRef
public String getProjectGroupRef(int idxProject)
- Specified by:
getProjectGroupRef
in interface loci.formats.meta.MetadataRetrieve
getProjectName
public String getProjectName(int idxProject)
- Specified by:
getProjectName
in interface loci.formats.meta.MetadataRetrieve
getProjectDescription
public String getProjectDescription(int idxProject)
- Specified by:
getProjectDescription
in interface loci.formats.meta.MetadataRetrieve
getGroupName
public String getGroupName(int idxGroup)
- Specified by:
getGroupName
in interface loci.formats.meta.MetadataRetrieve
getPixelsSizeT
public Integer getPixelsSizeT(int idxImage,
int idxPixels)
- Specified by:
getPixelsSizeT
in interface loci.formats.meta.MetadataRetrieve
getPixelsDimensionOrder
public String getPixelsDimensionOrder(int idxImage,
int idxPixels)
- Specified by:
getPixelsDimensionOrder
in interface loci.formats.meta.MetadataRetrieve
getPixelsPixelType
public String getPixelsPixelType(int idxImage,
int idxPixels)
- Specified by:
getPixelsPixelType
in interface loci.formats.meta.MetadataRetrieve
getPixelsSizeX
public Integer getPixelsSizeX(int idxImage,
int idxPixels)
- Specified by:
getPixelsSizeX
in interface loci.formats.meta.MetadataRetrieve
getPixelsSizeY
public Integer getPixelsSizeY(int idxImage,
int idxPixels)
- Specified by:
getPixelsSizeY
in interface loci.formats.meta.MetadataRetrieve
getPixelsSizeZ
public Integer getPixelsSizeZ(int idxImage,
int idxPixels)
- Specified by:
getPixelsSizeZ
in interface loci.formats.meta.MetadataRetrieve
getPixelsBigEndian
public Boolean getPixelsBigEndian(int idxImage,
int idxPixels)
- Specified by:
getPixelsBigEndian
in interface loci.formats.meta.MetadataRetrieve
getPixelsSizeC
public Integer getPixelsSizeC(int idxImage,
int idxPixels)
- Specified by:
getPixelsSizeC
in interface loci.formats.meta.MetadataRetrieve
getPixelsID
public String getPixelsID(int idxImage,
int idxPixels)
- Specified by:
getPixelsID
in interface loci.formats.meta.MetadataRetrieve
getPlateRefSample
public Integer getPlateRefSample(int idxScreen,
int idxPlateRef)
- Specified by:
getPlateRefSample
in interface loci.formats.meta.MetadataRetrieve
getPlateRefWell
public String getPlateRefWell(int idxScreen,
int idxPlateRef)
- Specified by:
getPlateRefWell
in interface loci.formats.meta.MetadataRetrieve
getPlateRefID
public String getPlateRefID(int idxScreen,
int idxPlateRef)
- Specified by:
getPlateRefID
in interface loci.formats.meta.MetadataRetrieve
getWellSampleIndex
public Integer getWellSampleIndex(int idxPlate,
int idxWell,
int idxWellSample)
- Specified by:
getWellSampleIndex
in interface loci.formats.meta.MetadataRetrieve
getWellSampleImageRef
public String getWellSampleImageRef(int idxPlate,
int idxWell,
int idxWellSample)
- Specified by:
getWellSampleImageRef
in interface loci.formats.meta.MetadataRetrieve
getWellSampleTimepoint
public Integer getWellSampleTimepoint(int idxPlate,
int idxWell,
int idxWellSample)
- Specified by:
getWellSampleTimepoint
in interface loci.formats.meta.MetadataRetrieve
getWellSamplePosX
public Float getWellSamplePosX(int idxPlate,
int idxWell,
int idxWellSample)
- Specified by:
getWellSamplePosX
in interface loci.formats.meta.MetadataRetrieve
getWellSamplePosY
public Float getWellSamplePosY(int idxPlate,
int idxWell,
int idxWellSample)
- Specified by:
getWellSamplePosY
in interface loci.formats.meta.MetadataRetrieve
getWellSampleID
public String getWellSampleID(int idxPlate,
int idxWell,
int idxWellSample)
- Specified by:
getWellSampleID
in interface loci.formats.meta.MetadataRetrieve
getPolylinePoints
public String getPolylinePoints(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getPolylinePoints
in interface loci.formats.meta.MetadataRetrieve
getPolylineID
public String getPolylineID(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getPolylineID
in interface loci.formats.meta.MetadataRetrieve
getPolylineTransform
public String getPolylineTransform(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getPolylineTransform
in interface loci.formats.meta.MetadataRetrieve
getRegionTag
public String getRegionTag(int idxImage,
int idxRegion)
- Specified by:
getRegionTag
in interface loci.formats.meta.MetadataRetrieve
getRegionName
public String getRegionName(int idxImage,
int idxRegion)
- Specified by:
getRegionName
in interface loci.formats.meta.MetadataRetrieve
getRegionID
public String getRegionID(int idxImage,
int idxRegion)
- Specified by:
getRegionID
in interface loci.formats.meta.MetadataRetrieve
getStagePositionPositionZ
public Float getStagePositionPositionZ(int idxImage,
int idxPixels,
int idxPlane)
- Specified by:
getStagePositionPositionZ
in interface loci.formats.meta.MetadataRetrieve
getStagePositionPositionX
public Float getStagePositionPositionX(int idxImage,
int idxPixels,
int idxPlane)
- Specified by:
getStagePositionPositionX
in interface loci.formats.meta.MetadataRetrieve
getStagePositionPositionY
public Float getStagePositionPositionY(int idxImage,
int idxPixels,
int idxPlane)
- Specified by:
getStagePositionPositionY
in interface loci.formats.meta.MetadataRetrieve
getWellSampleRefID
public String getWellSampleRefID(int idxScreen,
int idxScreenAcquisition,
int idxWellSampleRef)
- Specified by:
getWellSampleRefID
in interface loci.formats.meta.MetadataRetrieve
getPlateStatus
public String getPlateStatus(int idxPlate)
- Specified by:
getPlateStatus
in interface loci.formats.meta.MetadataRetrieve
getPlateRowNamingConvention
public String getPlateRowNamingConvention(int idxPlate)
- Specified by:
getPlateRowNamingConvention
in interface loci.formats.meta.MetadataRetrieve
getPlateDescription
public String getPlateDescription(int idxPlate)
- Specified by:
getPlateDescription
in interface loci.formats.meta.MetadataRetrieve
getPlateExternalIdentifier
public String getPlateExternalIdentifier(int idxPlate)
- Specified by:
getPlateExternalIdentifier
in interface loci.formats.meta.MetadataRetrieve
getPlateColumnNamingConvention
public String getPlateColumnNamingConvention(int idxPlate)
- Specified by:
getPlateColumnNamingConvention
in interface loci.formats.meta.MetadataRetrieve
getPlateWellOriginY
public Double getPlateWellOriginY(int idxPlate)
- Specified by:
getPlateWellOriginY
in interface loci.formats.meta.MetadataRetrieve
getPlateWellOriginX
public Double getPlateWellOriginX(int idxPlate)
- Specified by:
getPlateWellOriginX
in interface loci.formats.meta.MetadataRetrieve
getPlateID
public String getPlateID(int idxPlate)
- Specified by:
getPlateID
in interface loci.formats.meta.MetadataRetrieve
getPlateName
public String getPlateName(int idxPlate)
- Specified by:
getPlateName
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelLightSource
public String getLogicalChannelLightSource(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelLightSource
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelSecondaryEmissionFilter
public String getLogicalChannelSecondaryEmissionFilter(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelSecondaryEmissionFilter
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelPockelCellSetting
public Integer getLogicalChannelPockelCellSetting(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelPockelCellSetting
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelPinholeSize
public Float getLogicalChannelPinholeSize(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelPinholeSize
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelSecondaryExcitationFilter
public String getLogicalChannelSecondaryExcitationFilter(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelSecondaryExcitationFilter
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelPhotometricInterpretation
public String getLogicalChannelPhotometricInterpretation(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelPhotometricInterpretation
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelMode
public String getLogicalChannelMode(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelMode
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelContrastMethod
public String getLogicalChannelContrastMethod(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelContrastMethod
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelIlluminationType
public String getLogicalChannelIlluminationType(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelIlluminationType
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelOTF
public String getLogicalChannelOTF(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelOTF
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelID
public String getLogicalChannelID(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelID
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelFluor
public String getLogicalChannelFluor(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelFluor
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelEmWave
public Integer getLogicalChannelEmWave(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelEmWave
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelNdFilter
public Float getLogicalChannelNdFilter(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelNdFilter
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelName
public String getLogicalChannelName(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelName
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelDetector
public String getLogicalChannelDetector(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelDetector
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelSamplesPerPixel
public Integer getLogicalChannelSamplesPerPixel(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelSamplesPerPixel
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelExWave
public Integer getLogicalChannelExWave(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelExWave
in interface loci.formats.meta.MetadataRetrieve
getLogicalChannelFilterSet
public String getLogicalChannelFilterSet(int idxImage,
int idxLogicalChannel)
- Specified by:
getLogicalChannelFilterSet
in interface loci.formats.meta.MetadataRetrieve
getDichroicModel
public String getDichroicModel(int idxInstrument,
int idxDichroic)
- Specified by:
getDichroicModel
in interface loci.formats.meta.MetadataRetrieve
getDichroicLotNumber
public String getDichroicLotNumber(int idxInstrument,
int idxDichroic)
- Specified by:
getDichroicLotNumber
in interface loci.formats.meta.MetadataRetrieve
getDichroicManufacturer
public String getDichroicManufacturer(int idxInstrument,
int idxDichroic)
- Specified by:
getDichroicManufacturer
in interface loci.formats.meta.MetadataRetrieve
getReagentReagentIdentifier
public String getReagentReagentIdentifier(int idxScreen,
int idxReagent)
- Specified by:
getReagentReagentIdentifier
in interface loci.formats.meta.MetadataRetrieve
getReagentDescription
public String getReagentDescription(int idxScreen,
int idxReagent)
- Specified by:
getReagentDescription
in interface loci.formats.meta.MetadataRetrieve
getReagentID
public String getReagentID(int idxScreen,
int idxReagent)
- Specified by:
getReagentID
in interface loci.formats.meta.MetadataRetrieve
getReagentName
public String getReagentName(int idxScreen,
int idxReagent)
- Specified by:
getReagentName
in interface loci.formats.meta.MetadataRetrieve
getROIRefID
public String getROIRefID(int idxImage,
int idxMicrobeamManipulation,
int idxROIRef)
- Specified by:
getROIRefID
in interface loci.formats.meta.MetadataRetrieve
getInstrumentID
public String getInstrumentID(int idxInstrument)
- Specified by:
getInstrumentID
in interface loci.formats.meta.MetadataRetrieve
getExperimenterEmail
public String getExperimenterEmail(int idxExperimenter)
- Specified by:
getExperimenterEmail
in interface loci.formats.meta.MetadataRetrieve
getExperimenterOMEName
public String getExperimenterOMEName(int idxExperimenter)
- Specified by:
getExperimenterOMEName
in interface loci.formats.meta.MetadataRetrieve
getExperimenterFirstName
public String getExperimenterFirstName(int idxExperimenter)
- Specified by:
getExperimenterFirstName
in interface loci.formats.meta.MetadataRetrieve
getExperimenterLastName
public String getExperimenterLastName(int idxExperimenter)
- Specified by:
getExperimenterLastName
in interface loci.formats.meta.MetadataRetrieve
getExperimenterInstitution
public String getExperimenterInstitution(int idxExperimenter)
- Specified by:
getExperimenterInstitution
in interface loci.formats.meta.MetadataRetrieve
getExperimenterID
public String getExperimenterID(int idxExperimenter)
- Specified by:
getExperimenterID
in interface loci.formats.meta.MetadataRetrieve
getDetectorGain
public Float getDetectorGain(int idxInstrument,
int idxDetector)
- Specified by:
getDetectorGain
in interface loci.formats.meta.MetadataRetrieve
getDetectorSerialNumber
public String getDetectorSerialNumber(int idxInstrument,
int idxDetector)
- Specified by:
getDetectorSerialNumber
in interface loci.formats.meta.MetadataRetrieve
getDetectorZoom
public Float getDetectorZoom(int idxInstrument,
int idxDetector)
- Specified by:
getDetectorZoom
in interface loci.formats.meta.MetadataRetrieve
getDetectorAmplificationGain
public Float getDetectorAmplificationGain(int idxInstrument,
int idxDetector)
- Specified by:
getDetectorAmplificationGain
in interface loci.formats.meta.MetadataRetrieve
getDetectorVoltage
public Float getDetectorVoltage(int idxInstrument,
int idxDetector)
- Specified by:
getDetectorVoltage
in interface loci.formats.meta.MetadataRetrieve
getDetectorOffset
public Float getDetectorOffset(int idxInstrument,
int idxDetector)
- Specified by:
getDetectorOffset
in interface loci.formats.meta.MetadataRetrieve
getDetectorModel
public String getDetectorModel(int idxInstrument,
int idxDetector)
- Specified by:
getDetectorModel
in interface loci.formats.meta.MetadataRetrieve
getDetectorType
public String getDetectorType(int idxInstrument,
int idxDetector)
- Specified by:
getDetectorType
in interface loci.formats.meta.MetadataRetrieve
getDetectorID
public String getDetectorID(int idxInstrument,
int idxDetector)
- Specified by:
getDetectorID
in interface loci.formats.meta.MetadataRetrieve
getDetectorManufacturer
public String getDetectorManufacturer(int idxInstrument,
int idxDetector)
- Specified by:
getDetectorManufacturer
in interface loci.formats.meta.MetadataRetrieve
getLightSourceModel
public String getLightSourceModel(int idxInstrument,
int idxLightSource)
- Specified by:
getLightSourceModel
in interface loci.formats.meta.MetadataRetrieve
getLightSourceSerialNumber
public String getLightSourceSerialNumber(int idxInstrument,
int idxLightSource)
- Specified by:
getLightSourceSerialNumber
in interface loci.formats.meta.MetadataRetrieve
getLightSourceID
public String getLightSourceID(int idxInstrument,
int idxLightSource)
- Specified by:
getLightSourceID
in interface loci.formats.meta.MetadataRetrieve
getLightSourcePower
public Float getLightSourcePower(int idxInstrument,
int idxLightSource)
- Specified by:
getLightSourcePower
in interface loci.formats.meta.MetadataRetrieve
getLightSourceManufacturer
public String getLightSourceManufacturer(int idxInstrument,
int idxLightSource)
- Specified by:
getLightSourceManufacturer
in interface loci.formats.meta.MetadataRetrieve
getArcType
public String getArcType(int idxInstrument,
int idxLightSource)
- Specified by:
getArcType
in interface loci.formats.meta.MetadataRetrieve
getRectTransform
public String getRectTransform(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getRectTransform
in interface loci.formats.meta.MetadataRetrieve
getRectHeight
public String getRectHeight(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getRectHeight
in interface loci.formats.meta.MetadataRetrieve
getRectWidth
public String getRectWidth(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getRectWidth
in interface loci.formats.meta.MetadataRetrieve
getRectY
public String getRectY(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getRectY
in interface loci.formats.meta.MetadataRetrieve
getRectX
public String getRectX(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getRectX
in interface loci.formats.meta.MetadataRetrieve
getRectID
public String getRectID(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getRectID
in interface loci.formats.meta.MetadataRetrieve
getExperimentExperimenterRef
public String getExperimentExperimenterRef(int idxExperiment)
- Specified by:
getExperimentExperimenterRef
in interface loci.formats.meta.MetadataRetrieve
getExperimentType
public String getExperimentType(int idxExperiment)
- Specified by:
getExperimentType
in interface loci.formats.meta.MetadataRetrieve
getExperimentDescription
public String getExperimentDescription(int idxExperiment)
- Specified by:
getExperimentDescription
in interface loci.formats.meta.MetadataRetrieve
getExperimentID
public String getExperimentID(int idxExperiment)
- Specified by:
getExperimentID
in interface loci.formats.meta.MetadataRetrieve
getScreenAcquisitionEndTime
public String getScreenAcquisitionEndTime(int idxScreen,
int idxScreenAcquisition)
- Specified by:
getScreenAcquisitionEndTime
in interface loci.formats.meta.MetadataRetrieve
getScreenAcquisitionID
public String getScreenAcquisitionID(int idxScreen,
int idxScreenAcquisition)
- Specified by:
getScreenAcquisitionID
in interface loci.formats.meta.MetadataRetrieve
getScreenAcquisitionStartTime
public String getScreenAcquisitionStartTime(int idxScreen,
int idxScreenAcquisition)
- Specified by:
getScreenAcquisitionStartTime
in interface loci.formats.meta.MetadataRetrieve
getPlaneTimingExposureTime
public Float getPlaneTimingExposureTime(int idxImage,
int idxPixels,
int idxPlane)
- Specified by:
getPlaneTimingExposureTime
in interface loci.formats.meta.MetadataRetrieve
getPlaneTimingDeltaT
public Float getPlaneTimingDeltaT(int idxImage,
int idxPixels,
int idxPlane)
- Specified by:
getPlaneTimingDeltaT
in interface loci.formats.meta.MetadataRetrieve
getImagingEnvironmentCO2Percent
public Float getImagingEnvironmentCO2Percent(int idxImage)
- Specified by:
getImagingEnvironmentCO2Percent
in interface loci.formats.meta.MetadataRetrieve
getImagingEnvironmentTemperature
public Float getImagingEnvironmentTemperature(int idxImage)
- Specified by:
getImagingEnvironmentTemperature
in interface loci.formats.meta.MetadataRetrieve
getImagingEnvironmentAirPressure
public Float getImagingEnvironmentAirPressure(int idxImage)
- Specified by:
getImagingEnvironmentAirPressure
in interface loci.formats.meta.MetadataRetrieve
getImagingEnvironmentHumidity
public Float getImagingEnvironmentHumidity(int idxImage)
- Specified by:
getImagingEnvironmentHumidity
in interface loci.formats.meta.MetadataRetrieve
getFilamentType
public String getFilamentType(int idxInstrument,
int idxLightSource)
- Specified by:
getFilamentType
in interface loci.formats.meta.MetadataRetrieve
getMicroscopeModel
public String getMicroscopeModel(int idxInstrument)
- Specified by:
getMicroscopeModel
in interface loci.formats.meta.MetadataRetrieve
getMicroscopeSerialNumber
public String getMicroscopeSerialNumber(int idxInstrument)
- Specified by:
getMicroscopeSerialNumber
in interface loci.formats.meta.MetadataRetrieve
getMicroscopeType
public String getMicroscopeType(int idxInstrument)
- Specified by:
getMicroscopeType
in interface loci.formats.meta.MetadataRetrieve
getMicroscopeID
public String getMicroscopeID(int idxInstrument)
- Specified by:
getMicroscopeID
in interface loci.formats.meta.MetadataRetrieve
getMicroscopeManufacturer
public String getMicroscopeManufacturer(int idxInstrument)
- Specified by:
getMicroscopeManufacturer
in interface loci.formats.meta.MetadataRetrieve
getChannelComponentIndex
public Integer getChannelComponentIndex(int idxImage,
int idxLogicalChannel,
int idxChannelComponent)
- Specified by:
getChannelComponentIndex
in interface loci.formats.meta.MetadataRetrieve
getChannelComponentColorDomain
public String getChannelComponentColorDomain(int idxImage,
int idxLogicalChannel,
int idxChannelComponent)
- Specified by:
getChannelComponentColorDomain
in interface loci.formats.meta.MetadataRetrieve
getChannelComponentPixels
public String getChannelComponentPixels(int idxImage,
int idxLogicalChannel,
int idxChannelComponent)
- Specified by:
getChannelComponentPixels
in interface loci.formats.meta.MetadataRetrieve
getLaserPockelCell
public Boolean getLaserPockelCell(int idxInstrument,
int idxLightSource)
- Specified by:
getLaserPockelCell
in interface loci.formats.meta.MetadataRetrieve
getLaserTuneable
public Boolean getLaserTuneable(int idxInstrument,
int idxLightSource)
- Specified by:
getLaserTuneable
in interface loci.formats.meta.MetadataRetrieve
getLaserLaserMedium
public String getLaserLaserMedium(int idxInstrument,
int idxLightSource)
- Specified by:
getLaserLaserMedium
in interface loci.formats.meta.MetadataRetrieve
getLaserPulse
public String getLaserPulse(int idxInstrument,
int idxLightSource)
- Specified by:
getLaserPulse
in interface loci.formats.meta.MetadataRetrieve
getLaserWavelength
public Integer getLaserWavelength(int idxInstrument,
int idxLightSource)
- Specified by:
getLaserWavelength
in interface loci.formats.meta.MetadataRetrieve
getLaserFrequencyMultiplication
public Integer getLaserFrequencyMultiplication(int idxInstrument,
int idxLightSource)
- Specified by:
getLaserFrequencyMultiplication
in interface loci.formats.meta.MetadataRetrieve
getLaserType
public String getLaserType(int idxInstrument,
int idxLightSource)
- Specified by:
getLaserType
in interface loci.formats.meta.MetadataRetrieve
getLaserRepetitionRate
public Boolean getLaserRepetitionRate(int idxInstrument,
int idxLightSource)
- Specified by:
getLaserRepetitionRate
in interface loci.formats.meta.MetadataRetrieve
getScreenDescription
public String getScreenDescription(int idxScreen)
- Specified by:
getScreenDescription
in interface loci.formats.meta.MetadataRetrieve
getScreenReagentSetDescription
public String getScreenReagentSetDescription(int idxScreen)
- Specified by:
getScreenReagentSetDescription
in interface loci.formats.meta.MetadataRetrieve
getScreenProtocolIdentifier
public String getScreenProtocolIdentifier(int idxScreen)
- Specified by:
getScreenProtocolIdentifier
in interface loci.formats.meta.MetadataRetrieve
getScreenProtocolDescription
public String getScreenProtocolDescription(int idxScreen)
- Specified by:
getScreenProtocolDescription
in interface loci.formats.meta.MetadataRetrieve
getScreenExtern
public String getScreenExtern(int idxScreen)
- Specified by:
getScreenExtern
in interface loci.formats.meta.MetadataRetrieve
getScreenName
public String getScreenName(int idxScreen)
- Specified by:
getScreenName
in interface loci.formats.meta.MetadataRetrieve
getScreenType
public String getScreenType(int idxScreen)
- Specified by:
getScreenType
in interface loci.formats.meta.MetadataRetrieve
getScreenID
public String getScreenID(int idxScreen)
- Specified by:
getScreenID
in interface loci.formats.meta.MetadataRetrieve
getScreenReagentSetIdentifier
public String getScreenReagentSetIdentifier(int idxScreen)
- Specified by:
getScreenReagentSetIdentifier
in interface loci.formats.meta.MetadataRetrieve
getThumbnailMIMEtype
public String getThumbnailMIMEtype(int idxImage)
- Specified by:
getThumbnailMIMEtype
in interface loci.formats.meta.MetadataRetrieve
getThumbnailHref
public String getThumbnailHref(int idxImage)
- Specified by:
getThumbnailHref
in interface loci.formats.meta.MetadataRetrieve
getThumbnailID
public String getThumbnailID(int idxImage)
- Specified by:
getThumbnailID
in interface loci.formats.meta.MetadataRetrieve
getObjectiveIris
public Boolean getObjectiveIris(int idxInstrument,
int idxObjective)
- Specified by:
getObjectiveIris
in interface loci.formats.meta.MetadataRetrieve
getObjectiveWorkingDistance
public Float getObjectiveWorkingDistance(int idxInstrument,
int idxObjective)
- Specified by:
getObjectiveWorkingDistance
in interface loci.formats.meta.MetadataRetrieve
getObjectiveImmersion
public String getObjectiveImmersion(int idxInstrument,
int idxObjective)
- Specified by:
getObjectiveImmersion
in interface loci.formats.meta.MetadataRetrieve
getObjectiveCorrection
public String getObjectiveCorrection(int idxInstrument,
int idxObjective)
- Specified by:
getObjectiveCorrection
in interface loci.formats.meta.MetadataRetrieve
getObjectiveSerialNumber
public String getObjectiveSerialNumber(int idxInstrument,
int idxObjective)
- Specified by:
getObjectiveSerialNumber
in interface loci.formats.meta.MetadataRetrieve
getObjectiveLensNA
public Float getObjectiveLensNA(int idxInstrument,
int idxObjective)
- Specified by:
getObjectiveLensNA
in interface loci.formats.meta.MetadataRetrieve
getObjectiveNominalMagnification
public Integer getObjectiveNominalMagnification(int idxInstrument,
int idxObjective)
- Specified by:
getObjectiveNominalMagnification
in interface loci.formats.meta.MetadataRetrieve
getObjectiveModel
public String getObjectiveModel(int idxInstrument,
int idxObjective)
- Specified by:
getObjectiveModel
in interface loci.formats.meta.MetadataRetrieve
getObjectiveCalibratedMagnification
public Float getObjectiveCalibratedMagnification(int idxInstrument,
int idxObjective)
- Specified by:
getObjectiveCalibratedMagnification
in interface loci.formats.meta.MetadataRetrieve
getObjectiveID
public String getObjectiveID(int idxInstrument,
int idxObjective)
- Specified by:
getObjectiveID
in interface loci.formats.meta.MetadataRetrieve
getObjectiveManufacturer
public String getObjectiveManufacturer(int idxInstrument,
int idxObjective)
- Specified by:
getObjectiveManufacturer
in interface loci.formats.meta.MetadataRetrieve
getCircleR
public String getCircleR(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getCircleR
in interface loci.formats.meta.MetadataRetrieve
getCircleCy
public String getCircleCy(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getCircleCy
in interface loci.formats.meta.MetadataRetrieve
getCircleCx
public String getCircleCx(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getCircleCx
in interface loci.formats.meta.MetadataRetrieve
getCircleID
public String getCircleID(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getCircleID
in interface loci.formats.meta.MetadataRetrieve
getCircleTransform
public String getCircleTransform(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getCircleTransform
in interface loci.formats.meta.MetadataRetrieve
getDatasetRefID
public String getDatasetRefID(int idxImage,
int idxDatasetRef)
- Specified by:
getDatasetRefID
in interface loci.formats.meta.MetadataRetrieve
getMicrobeamManipulationRefID
public String getMicrobeamManipulationRefID(int idxExperiment,
int idxMicrobeamManipulationRef)
- Specified by:
getMicrobeamManipulationRefID
in interface loci.formats.meta.MetadataRetrieve
getLightSourceRefLightSource
public String getLightSourceRefLightSource(int idxImage,
int idxMicrobeamManipulation,
int idxLightSourceRef)
- Specified by:
getLightSourceRefLightSource
in interface loci.formats.meta.MetadataRetrieve
getLightSourceRefWavelength
public Integer getLightSourceRefWavelength(int idxImage,
int idxMicrobeamManipulation,
int idxLightSourceRef)
- Specified by:
getLightSourceRefWavelength
in interface loci.formats.meta.MetadataRetrieve
getLightSourceRefAttenuation
public Float getLightSourceRefAttenuation(int idxImage,
int idxMicrobeamManipulation,
int idxLightSourceRef)
- Specified by:
getLightSourceRefAttenuation
in interface loci.formats.meta.MetadataRetrieve
getPointR
public String getPointR(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getPointR
in interface loci.formats.meta.MetadataRetrieve
getPointCy
public String getPointCy(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getPointCy
in interface loci.formats.meta.MetadataRetrieve
getPointCx
public String getPointCx(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getPointCx
in interface loci.formats.meta.MetadataRetrieve
getPointID
public String getPointID(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getPointID
in interface loci.formats.meta.MetadataRetrieve
getPointTransform
public String getPointTransform(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getPointTransform
in interface loci.formats.meta.MetadataRetrieve
getFilterFilterWheel
public String getFilterFilterWheel(int idxInstrument,
int idxFilter)
- Specified by:
getFilterFilterWheel
in interface loci.formats.meta.MetadataRetrieve
getFilterModel
public String getFilterModel(int idxInstrument,
int idxFilter)
- Specified by:
getFilterModel
in interface loci.formats.meta.MetadataRetrieve
getFilterLotNumber
public String getFilterLotNumber(int idxInstrument,
int idxFilter)
- Specified by:
getFilterLotNumber
in interface loci.formats.meta.MetadataRetrieve
getFilterType
public String getFilterType(int idxInstrument,
int idxFilter)
- Specified by:
getFilterType
in interface loci.formats.meta.MetadataRetrieve
getFilterManufacturer
public String getFilterManufacturer(int idxInstrument,
int idxFilter)
- Specified by:
getFilterManufacturer
in interface loci.formats.meta.MetadataRetrieve
getMicrobeamManipulationExperimenterRef
public String getMicrobeamManipulationExperimenterRef(int idxImage,
int idxMicrobeamManipulation)
- Specified by:
getMicrobeamManipulationExperimenterRef
in interface loci.formats.meta.MetadataRetrieve
getMicrobeamManipulationType
public String getMicrobeamManipulationType(int idxImage,
int idxMicrobeamManipulation)
- Specified by:
getMicrobeamManipulationType
in interface loci.formats.meta.MetadataRetrieve
getMicrobeamManipulationID
public String getMicrobeamManipulationID(int idxImage,
int idxMicrobeamManipulation)
- Specified by:
getMicrobeamManipulationID
in interface loci.formats.meta.MetadataRetrieve
getEllipseRx
public String getEllipseRx(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getEllipseRx
in interface loci.formats.meta.MetadataRetrieve
getEllipseRy
public String getEllipseRy(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getEllipseRy
in interface loci.formats.meta.MetadataRetrieve
getEllipseTransform
public String getEllipseTransform(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getEllipseTransform
in interface loci.formats.meta.MetadataRetrieve
getEllipseCy
public String getEllipseCy(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getEllipseCy
in interface loci.formats.meta.MetadataRetrieve
getEllipseCx
public String getEllipseCx(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getEllipseCx
in interface loci.formats.meta.MetadataRetrieve
getEllipseID
public String getEllipseID(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getEllipseID
in interface loci.formats.meta.MetadataRetrieve
getGreyChannelChannelNumber
public Integer getGreyChannelChannelNumber(int idxImage)
getGreyChannelBlackLevel
public Float getGreyChannelBlackLevel(int idxImage)
getGreyChannelWhiteLevel
public Float getGreyChannelWhiteLevel(int idxImage)
getGreyChannelGamma
public Float getGreyChannelGamma(int idxImage)
getGreyChannelisOn
public Boolean getGreyChannelisOn(int idxImage)
getTransmittanceRangeCutIn
public Integer getTransmittanceRangeCutIn(int idxInstrument,
int idxFilter)
- Specified by:
getTransmittanceRangeCutIn
in interface loci.formats.meta.MetadataRetrieve
getTransmittanceRangeTransmittance
public Integer getTransmittanceRangeTransmittance(int idxInstrument,
int idxFilter)
- Specified by:
getTransmittanceRangeTransmittance
in interface loci.formats.meta.MetadataRetrieve
getTransmittanceRangeCutOut
public Integer getTransmittanceRangeCutOut(int idxInstrument,
int idxFilter)
- Specified by:
getTransmittanceRangeCutOut
in interface loci.formats.meta.MetadataRetrieve
getTransmittanceRangeCutInTolerance
public Integer getTransmittanceRangeCutInTolerance(int idxInstrument,
int idxFilter)
- Specified by:
getTransmittanceRangeCutInTolerance
in interface loci.formats.meta.MetadataRetrieve
getTransmittanceRangeCutOutTolerance
public Integer getTransmittanceRangeCutOutTolerance(int idxInstrument,
int idxFilter)
- Specified by:
getTransmittanceRangeCutOutTolerance
in interface loci.formats.meta.MetadataRetrieve
getImageExperimentRef
public String getImageExperimentRef(int idxImage)
- Specified by:
getImageExperimentRef
in interface loci.formats.meta.MetadataRetrieve
getImageDescription
public String getImageDescription(int idxImage)
- Specified by:
getImageDescription
in interface loci.formats.meta.MetadataRetrieve
getImageExperimenterRef
public String getImageExperimenterRef(int idxImage)
- Specified by:
getImageExperimenterRef
in interface loci.formats.meta.MetadataRetrieve
getImageGroupRef
public String getImageGroupRef(int idxImage)
- Specified by:
getImageGroupRef
in interface loci.formats.meta.MetadataRetrieve
getImageInstrumentRef
public String getImageInstrumentRef(int idxImage)
- Specified by:
getImageInstrumentRef
in interface loci.formats.meta.MetadataRetrieve
getImageDefaultPixels
public String getImageDefaultPixels(int idxImage)
- Specified by:
getImageDefaultPixels
in interface loci.formats.meta.MetadataRetrieve
getImageAcquiredPixels
public String getImageAcquiredPixels(int idxImage)
- Specified by:
getImageAcquiredPixels
in interface loci.formats.meta.MetadataRetrieve
getImageObjective
public String getImageObjective(int idxImage)
getImageCreationDate
public String getImageCreationDate(int idxImage)
- Specified by:
getImageCreationDate
in interface loci.formats.meta.MetadataRetrieve
getImageID
public String getImageID(int idxImage)
- Specified by:
getImageID
in interface loci.formats.meta.MetadataRetrieve
getImageName
public String getImageName(int idxImage)
- Specified by:
getImageName
in interface loci.formats.meta.MetadataRetrieve
getROIT0
public Integer getROIT0(int idxImage,
int idxROI)
- Specified by:
getROIT0
in interface loci.formats.meta.MetadataRetrieve
getROIT1
public Integer getROIT1(int idxImage,
int idxROI)
- Specified by:
getROIT1
in interface loci.formats.meta.MetadataRetrieve
getROIY1
public Integer getROIY1(int idxImage,
int idxROI)
- Specified by:
getROIY1
in interface loci.formats.meta.MetadataRetrieve
getROIY0
public Integer getROIY0(int idxImage,
int idxROI)
- Specified by:
getROIY0
in interface loci.formats.meta.MetadataRetrieve
getROIX0
public Integer getROIX0(int idxImage,
int idxROI)
- Specified by:
getROIX0
in interface loci.formats.meta.MetadataRetrieve
getROIX1
public Integer getROIX1(int idxImage,
int idxROI)
- Specified by:
getROIX1
in interface loci.formats.meta.MetadataRetrieve
getROIZ0
public Integer getROIZ0(int idxImage,
int idxROI)
- Specified by:
getROIZ0
in interface loci.formats.meta.MetadataRetrieve
getROIZ1
public Integer getROIZ1(int idxImage,
int idxROI)
- Specified by:
getROIZ1
in interface loci.formats.meta.MetadataRetrieve
getROIID
public String getROIID(int idxImage,
int idxROI)
- Specified by:
getROIID
in interface loci.formats.meta.MetadataRetrieve
getShapeTextAnchor
public String getShapeTextAnchor(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeTextAnchor
in interface loci.formats.meta.MetadataRetrieve
getShapeVectorEffect
public String getShapeVectorEffect(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeVectorEffect
in interface loci.formats.meta.MetadataRetrieve
getShapeFontStyle
public String getShapeFontStyle(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeFontStyle
in interface loci.formats.meta.MetadataRetrieve
getShapeStrokeLineJoin
public String getShapeStrokeLineJoin(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeStrokeLineJoin
in interface loci.formats.meta.MetadataRetrieve
getShapeBaselineShift
public String getShapeBaselineShift(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeBaselineShift
in interface loci.formats.meta.MetadataRetrieve
getShapeVisibility
public Boolean getShapeVisibility(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeVisibility
in interface loci.formats.meta.MetadataRetrieve
getShapeTheT
public Integer getShapeTheT(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeTheT
in interface loci.formats.meta.MetadataRetrieve
getShapeFontStretch
public String getShapeFontStretch(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeFontStretch
in interface loci.formats.meta.MetadataRetrieve
getShapeStrokeLineCap
public String getShapeStrokeLineCap(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeStrokeLineCap
in interface loci.formats.meta.MetadataRetrieve
getShapeStrokeDashArray
public String getShapeStrokeDashArray(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeStrokeDashArray
in interface loci.formats.meta.MetadataRetrieve
getShapeDirection
public String getShapeDirection(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeDirection
in interface loci.formats.meta.MetadataRetrieve
getShapeGlyphOrientationVertical
public Integer getShapeGlyphOrientationVertical(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeGlyphOrientationVertical
in interface loci.formats.meta.MetadataRetrieve
getShapeFontVariant
public String getShapeFontVariant(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeFontVariant
in interface loci.formats.meta.MetadataRetrieve
getShapeStrokeOpacity
public Float getShapeStrokeOpacity(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeStrokeOpacity
in interface loci.formats.meta.MetadataRetrieve
getShapeFontFamily
public String getShapeFontFamily(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeFontFamily
in interface loci.formats.meta.MetadataRetrieve
getShapeFillRule
public String getShapeFillRule(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeFillRule
in interface loci.formats.meta.MetadataRetrieve
getShapeStrokeAttribute
public String getShapeStrokeAttribute(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeStrokeAttribute
in interface loci.formats.meta.MetadataRetrieve
getShapeLocked
public Boolean getShapeLocked(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeLocked
in interface loci.formats.meta.MetadataRetrieve
getShapeTextDecoration
public String getShapeTextDecoration(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeTextDecoration
in interface loci.formats.meta.MetadataRetrieve
getShapeG
public String getShapeG(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeG
in interface loci.formats.meta.MetadataRetrieve
getShapeWritingMode
public String getShapeWritingMode(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeWritingMode
in interface loci.formats.meta.MetadataRetrieve
getShapeFontSize
public Integer getShapeFontSize(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeFontSize
in interface loci.formats.meta.MetadataRetrieve
getShapeFillColor
public String getShapeFillColor(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeFillColor
in interface loci.formats.meta.MetadataRetrieve
getShapeID
public String getShapeID(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeID
in interface loci.formats.meta.MetadataRetrieve
getShapeStrokeWidth
public Integer getShapeStrokeWidth(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeStrokeWidth
in interface loci.formats.meta.MetadataRetrieve
getShapeTextStroke
public String getShapeTextStroke(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeTextStroke
in interface loci.formats.meta.MetadataRetrieve
getShapeStrokeMiterLimit
public Integer getShapeStrokeMiterLimit(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeStrokeMiterLimit
in interface loci.formats.meta.MetadataRetrieve
getShapeText
public String getShapeText(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeText
in interface loci.formats.meta.MetadataRetrieve
getShapeTextFill
public String getShapeTextFill(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeTextFill
in interface loci.formats.meta.MetadataRetrieve
getShapeFontWeight
public String getShapeFontWeight(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeFontWeight
in interface loci.formats.meta.MetadataRetrieve
getShapeFillOpacity
public String getShapeFillOpacity(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeFillOpacity
in interface loci.formats.meta.MetadataRetrieve
getShapeStrokeColor
public String getShapeStrokeColor(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeStrokeColor
in interface loci.formats.meta.MetadataRetrieve
getShapeTheZ
public Integer getShapeTheZ(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getShapeTheZ
in interface loci.formats.meta.MetadataRetrieve
getContactExperimenter
public String getContactExperimenter(int idxGroup)
- Specified by:
getContactExperimenter
in interface loci.formats.meta.MetadataRetrieve
getPolygonPoints
public String getPolygonPoints(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getPolygonPoints
in interface loci.formats.meta.MetadataRetrieve
getPolygonID
public String getPolygonID(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getPolygonID
in interface loci.formats.meta.MetadataRetrieve
getPolygonTransform
public String getPolygonTransform(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getPolygonTransform
in interface loci.formats.meta.MetadataRetrieve
getMaskTransform
public String getMaskTransform(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getMaskTransform
in interface loci.formats.meta.MetadataRetrieve
getMaskHeight
public String getMaskHeight(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getMaskHeight
in interface loci.formats.meta.MetadataRetrieve
getMaskWidth
public String getMaskWidth(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getMaskWidth
in interface loci.formats.meta.MetadataRetrieve
getMaskY
public String getMaskY(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getMaskY
in interface loci.formats.meta.MetadataRetrieve
getMaskX
public String getMaskX(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getMaskX
in interface loci.formats.meta.MetadataRetrieve
getMaskID
public String getMaskID(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getMaskID
in interface loci.formats.meta.MetadataRetrieve
getStageLabelY
public Float getStageLabelY(int idxImage)
- Specified by:
getStageLabelY
in interface loci.formats.meta.MetadataRetrieve
getStageLabelX
public Float getStageLabelX(int idxImage)
- Specified by:
getStageLabelX
in interface loci.formats.meta.MetadataRetrieve
getStageLabelZ
public Float getStageLabelZ(int idxImage)
- Specified by:
getStageLabelZ
in interface loci.formats.meta.MetadataRetrieve
getStageLabelName
public String getStageLabelName(int idxImage)
- Specified by:
getStageLabelName
in interface loci.formats.meta.MetadataRetrieve
getTiffDataUUID
public String getTiffDataUUID(int idxImage,
int idxPixels,
int idxTiffData)
- Specified by:
getTiffDataUUID
in interface loci.formats.meta.MetadataRetrieve
getTiffDataNumPlanes
public Integer getTiffDataNumPlanes(int idxImage,
int idxPixels,
int idxTiffData)
- Specified by:
getTiffDataNumPlanes
in interface loci.formats.meta.MetadataRetrieve
getTiffDataFirstC
public Integer getTiffDataFirstC(int idxImage,
int idxPixels,
int idxTiffData)
- Specified by:
getTiffDataFirstC
in interface loci.formats.meta.MetadataRetrieve
getTiffDataFileName
public String getTiffDataFileName(int idxImage,
int idxPixels,
int idxTiffData)
- Specified by:
getTiffDataFileName
in interface loci.formats.meta.MetadataRetrieve
getTiffDataIFD
public Integer getTiffDataIFD(int idxImage,
int idxPixels,
int idxTiffData)
- Specified by:
getTiffDataIFD
in interface loci.formats.meta.MetadataRetrieve
getTiffDataFirstZ
public Integer getTiffDataFirstZ(int idxImage,
int idxPixels,
int idxTiffData)
- Specified by:
getTiffDataFirstZ
in interface loci.formats.meta.MetadataRetrieve
getTiffDataFirstT
public Integer getTiffDataFirstT(int idxImage,
int idxPixels,
int idxTiffData)
- Specified by:
getTiffDataFirstT
in interface loci.formats.meta.MetadataRetrieve
getDisplayOptionsID
public String getDisplayOptionsID(int idxImage)
- Specified by:
getDisplayOptionsID
in interface loci.formats.meta.MetadataRetrieve
getDisplayOptionsDisplay
public String getDisplayOptionsDisplay(int idxImage)
- Specified by:
getDisplayOptionsDisplay
in interface loci.formats.meta.MetadataRetrieve
getDisplayOptionsZoom
public Float getDisplayOptionsZoom(int idxImage)
- Specified by:
getDisplayOptionsZoom
in interface loci.formats.meta.MetadataRetrieve
getFilterSetDichroic
public String getFilterSetDichroic(int idxInstrument,
int idxFilterSet)
- Specified by:
getFilterSetDichroic
in interface loci.formats.meta.MetadataRetrieve
getFilterSetExFilter
public String getFilterSetExFilter(int idxInstrument,
int idxFilterSet)
- Specified by:
getFilterSetExFilter
in interface loci.formats.meta.MetadataRetrieve
getFilterSetLotNumber
public String getFilterSetLotNumber(int idxInstrument,
int idxFilterSet)
- Specified by:
getFilterSetLotNumber
in interface loci.formats.meta.MetadataRetrieve
getFilterSetEmFilter
public String getFilterSetEmFilter(int idxInstrument,
int idxFilterSet)
- Specified by:
getFilterSetEmFilter
in interface loci.formats.meta.MetadataRetrieve
getFilterSetModel
public String getFilterSetModel(int idxInstrument,
int idxFilterSet)
- Specified by:
getFilterSetModel
in interface loci.formats.meta.MetadataRetrieve
getFilterSetManufacturer
public String getFilterSetManufacturer(int idxInstrument,
int idxFilterSet)
- Specified by:
getFilterSetManufacturer
in interface loci.formats.meta.MetadataRetrieve
getWellExternalIdentifier
public String getWellExternalIdentifier(int idxPlate,
int idxWell)
- Specified by:
getWellExternalIdentifier
in interface loci.formats.meta.MetadataRetrieve
getWellColumn
public Integer getWellColumn(int idxPlate,
int idxWell)
- Specified by:
getWellColumn
in interface loci.formats.meta.MetadataRetrieve
getWellExternalDescription
public String getWellExternalDescription(int idxPlate,
int idxWell)
- Specified by:
getWellExternalDescription
in interface loci.formats.meta.MetadataRetrieve
getWellReagent
public String getWellReagent(int idxPlate,
int idxWell)
- Specified by:
getWellReagent
in interface loci.formats.meta.MetadataRetrieve
getWellType
public String getWellType(int idxPlate,
int idxWell)
- Specified by:
getWellType
in interface loci.formats.meta.MetadataRetrieve
getWellID
public String getWellID(int idxPlate,
int idxWell)
- Specified by:
getWellID
in interface loci.formats.meta.MetadataRetrieve
getWellRow
public Integer getWellRow(int idxPlate,
int idxWell)
- Specified by:
getWellRow
in interface loci.formats.meta.MetadataRetrieve
getPlaneID
public String getPlaneID(int idxImage,
int idxPixels,
int idxPlane)
- Specified by:
getPlaneID
in interface loci.formats.meta.MetadataRetrieve
getPlaneTheT
public Integer getPlaneTheT(int idxImage,
int idxPixels,
int idxPlane)
- Specified by:
getPlaneTheT
in interface loci.formats.meta.MetadataRetrieve
getPlaneTheC
public Integer getPlaneTheC(int idxImage,
int idxPixels,
int idxPlane)
- Specified by:
getPlaneTheC
in interface loci.formats.meta.MetadataRetrieve
getPlaneTheZ
public Integer getPlaneTheZ(int idxImage,
int idxPixels,
int idxPlane)
- Specified by:
getPlaneTheZ
in interface loci.formats.meta.MetadataRetrieve
getPlaneHashSHA1
public String getPlaneHashSHA1(int idxImage,
int idxPixels,
int idxPlane)
- Specified by:
getPlaneHashSHA1
in interface loci.formats.meta.MetadataRetrieve
getLineX1
public String getLineX1(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getLineX1
in interface loci.formats.meta.MetadataRetrieve
getLineTransform
public String getLineTransform(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getLineTransform
in interface loci.formats.meta.MetadataRetrieve
getLineY1
public String getLineY1(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getLineY1
in interface loci.formats.meta.MetadataRetrieve
getLineX2
public String getLineX2(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getLineX2
in interface loci.formats.meta.MetadataRetrieve
getLineY2
public String getLineY2(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getLineY2
in interface loci.formats.meta.MetadataRetrieve
getLineID
public String getLineID(int idxImage,
int idxROI,
int idxShape)
- Specified by:
getLineID
in interface loci.formats.meta.MetadataRetrieve
getOTFPixelType
public String getOTFPixelType(int idxInstrument,
int idxOTF)
- Specified by:
getOTFPixelType
in interface loci.formats.meta.MetadataRetrieve
getOTFSizeX
public Integer getOTFSizeX(int idxInstrument,
int idxOTF)
- Specified by:
getOTFSizeX
in interface loci.formats.meta.MetadataRetrieve
getOTFSizeY
public Integer getOTFSizeY(int idxInstrument,
int idxOTF)
- Specified by:
getOTFSizeY
in interface loci.formats.meta.MetadataRetrieve
getOTFOpticalAxisAveraged
public Boolean getOTFOpticalAxisAveraged(int idxInstrument,
int idxOTF)
- Specified by:
getOTFOpticalAxisAveraged
in interface loci.formats.meta.MetadataRetrieve
getOTFObjective
public String getOTFObjective(int idxInstrument,
int idxOTF)
- Specified by:
getOTFObjective
in interface loci.formats.meta.MetadataRetrieve
getOTFBinaryFile
public String getOTFBinaryFile(int idxInstrument,
int idxOTF)
- Specified by:
getOTFBinaryFile
in interface loci.formats.meta.MetadataRetrieve
getOTFID
public String getOTFID(int idxInstrument,
int idxOTF)
- Specified by:
getOTFID
in interface loci.formats.meta.MetadataRetrieve
getDetectorSettingsBinning
public String getDetectorSettingsBinning(int imageIndex,
int logicalChannelIndex)
- Specified by:
getDetectorSettingsBinning
in interface loci.formats.meta.MetadataRetrieve
getDetectorSettingsDetector
public String getDetectorSettingsDetector(int imageIndex,
int logicalChannelIndex)
- Specified by:
getDetectorSettingsDetector
in interface loci.formats.meta.MetadataRetrieve
getDetectorSettingsGain
public Float getDetectorSettingsGain(int imageIndex,
int logicalChannelIndex)
- Specified by:
getDetectorSettingsGain
in interface loci.formats.meta.MetadataRetrieve
getDetectorSettingsOffset
public Float getDetectorSettingsOffset(int imageIndex,
int logicalChannelIndex)
- Specified by:
getDetectorSettingsOffset
in interface loci.formats.meta.MetadataRetrieve
getDetectorSettingsReadOutRate
public Float getDetectorSettingsReadOutRate(int imageIndex,
int logicalChannelIndex)
- Specified by:
getDetectorSettingsReadOutRate
in interface loci.formats.meta.MetadataRetrieve
getDetectorSettingsVoltage
public Float getDetectorSettingsVoltage(int imageIndex,
int logicalChannelIndex)
- Specified by:
getDetectorSettingsVoltage
in interface loci.formats.meta.MetadataRetrieve
getDimensionsPhysicalSizeX
public Float getDimensionsPhysicalSizeX(int imageIndex,
int pixelsIndex)
- Specified by:
getDimensionsPhysicalSizeX
in interface loci.formats.meta.MetadataRetrieve
getDimensionsPhysicalSizeY
public Float getDimensionsPhysicalSizeY(int imageIndex,
int pixelsIndex)
- Specified by:
getDimensionsPhysicalSizeY
in interface loci.formats.meta.MetadataRetrieve
getDimensionsPhysicalSizeZ
public Float getDimensionsPhysicalSizeZ(int imageIndex,
int pixelsIndex)
- Specified by:
getDimensionsPhysicalSizeZ
in interface loci.formats.meta.MetadataRetrieve
getDimensionsTimeIncrement
public Float getDimensionsTimeIncrement(int imageIndex,
int pixelsIndex)
- Specified by:
getDimensionsTimeIncrement
in interface loci.formats.meta.MetadataRetrieve
getDimensionsWaveIncrement
public Integer getDimensionsWaveIncrement(int imageIndex,
int pixelsIndex)
- Specified by:
getDimensionsWaveIncrement
in interface loci.formats.meta.MetadataRetrieve
getDimensionsWaveStart
public Integer getDimensionsWaveStart(int imageIndex,
int pixelsIndex)
- Specified by:
getDimensionsWaveStart
in interface loci.formats.meta.MetadataRetrieve
getDisplayOptionsProjectionZStart
public Integer getDisplayOptionsProjectionZStart(int imageIndex)
getDisplayOptionsProjectionZStop
public Integer getDisplayOptionsProjectionZStop(int imageIndex)
getDisplayOptionsTimeTStart
public Integer getDisplayOptionsTimeTStart(int imageIndex)
getDisplayOptionsTimeTStop
public Integer getDisplayOptionsTimeTStop(int imageIndex)
getEmFilterLotNumber
public String getEmFilterLotNumber(int instrumentIndex,
int filterIndex)
- Specified by:
getEmFilterLotNumber
in interface loci.formats.meta.MetadataRetrieve
getEmFilterManufacturer
public String getEmFilterManufacturer(int instrumentIndex,
int filterIndex)
- Specified by:
getEmFilterManufacturer
in interface loci.formats.meta.MetadataRetrieve
getEmFilterModel
public String getEmFilterModel(int instrumentIndex,
int filterIndex)
- Specified by:
getEmFilterModel
in interface loci.formats.meta.MetadataRetrieve
getEmFilterType
public String getEmFilterType(int instrumentIndex,
int filterIndex)
- Specified by:
getEmFilterType
in interface loci.formats.meta.MetadataRetrieve
getExFilterLotNumber
public String getExFilterLotNumber(int instrumentIndex,
int filterIndex)
- Specified by:
getExFilterLotNumber
in interface loci.formats.meta.MetadataRetrieve
getExFilterManufacturer
public String getExFilterManufacturer(int instrumentIndex,
int filterIndex)
- Specified by:
getExFilterManufacturer
in interface loci.formats.meta.MetadataRetrieve
getExFilterModel
public String getExFilterModel(int instrumentIndex,
int filterIndex)
- Specified by:
getExFilterModel
in interface loci.formats.meta.MetadataRetrieve
getExFilterType
public String getExFilterType(int instrumentIndex,
int filterIndex)
- Specified by:
getExFilterType
in interface loci.formats.meta.MetadataRetrieve
getExperimenterMembershipCount
public int getExperimenterMembershipCount(int experimenterIndex)
- Specified by:
getExperimenterMembershipCount
in interface loci.formats.meta.MetadataRetrieve
getExperimenterMembershipGroup
public String getExperimenterMembershipGroup(int experimenterIndex,
int groupRefIndex)
- Specified by:
getExperimenterMembershipGroup
in interface loci.formats.meta.MetadataRetrieve
getGreyChannelMapColorMap
public String getGreyChannelMapColorMap(int imageIndex)
getLightSourceSettingsAttenuation
public Float getLightSourceSettingsAttenuation(int imageIndex,
int logicalChannelIndex)
- Specified by:
getLightSourceSettingsAttenuation
in interface loci.formats.meta.MetadataRetrieve
getLightSourceSettingsLightSource
public String getLightSourceSettingsLightSource(int imageIndex,
int logicalChannelIndex)
- Specified by:
getLightSourceSettingsLightSource
in interface loci.formats.meta.MetadataRetrieve
getLightSourceSettingsWavelength
public Integer getLightSourceSettingsWavelength(int imageIndex,
int logicalChannelIndex)
- Specified by:
getLightSourceSettingsWavelength
in interface loci.formats.meta.MetadataRetrieve
getObjectiveSettingsCorrectionCollar
public Float getObjectiveSettingsCorrectionCollar(int imageIndex)
- Specified by:
getObjectiveSettingsCorrectionCollar
in interface loci.formats.meta.MetadataRetrieve
getObjectiveSettingsMedium
public String getObjectiveSettingsMedium(int imageIndex)
- Specified by:
getObjectiveSettingsMedium
in interface loci.formats.meta.MetadataRetrieve
getObjectiveSettingsObjective
public String getObjectiveSettingsObjective(int imageIndex)
- Specified by:
getObjectiveSettingsObjective
in interface loci.formats.meta.MetadataRetrieve
getObjectiveSettingsRefractiveIndex
public Float getObjectiveSettingsRefractiveIndex(int imageIndex)
- Specified by:
getObjectiveSettingsRefractiveIndex
in interface loci.formats.meta.MetadataRetrieve
getPathD
public String getPathD(int imageIndex,
int roiIndex,
int shapeIndex)
- Specified by:
getPathD
in interface loci.formats.meta.MetadataRetrieve
getPathID
public String getPathID(int imageIndex,
int roiIndex,
int shapeIndex)
- Specified by:
getPathID
in interface loci.formats.meta.MetadataRetrieve
getDichroicID
public String getDichroicID(int arg0,
int arg1)
- Specified by:
getDichroicID
in interface loci.formats.meta.MetadataRetrieve
getFilterID
public String getFilterID(int arg0,
int arg1)
- Specified by:
getFilterID
in interface loci.formats.meta.MetadataRetrieve
getFilterSetID
public String getFilterSetID(int arg0,
int arg1)
- Specified by:
getFilterSetID
in interface loci.formats.meta.MetadataRetrieve
getRoiLinkCount
public int getRoiLinkCount(int arg0,
int arg1)
- Specified by:
getRoiLinkCount
in interface loci.formats.meta.MetadataRetrieve
getRoiLinkDirection
public String getRoiLinkDirection(int arg0,
int arg1,
int arg2)
- Specified by:
getRoiLinkDirection
in interface loci.formats.meta.MetadataRetrieve
getRoiLinkName
public String getRoiLinkName(int arg0,
int arg1,
int arg2)
- Specified by:
getRoiLinkName
in interface loci.formats.meta.MetadataRetrieve
getRoiLinkRef
public String getRoiLinkRef(int arg0,
int arg1,
int arg2)
- Specified by:
getRoiLinkRef
in interface loci.formats.meta.MetadataRetrieve
getGroupID
public String getGroupID(int arg0)
- Specified by:
getGroupID
in interface loci.formats.meta.MetadataRetrieve
OmeroJava Api
Version: Beta-4.1.1-r5927-b91
Copyright © 2009 The University of Dundee. All Rights Reserved.