ome-xml  5.2.0-m5
Experiment.h
1 /*
2  * #%L
3  * OME-XML C++ library for working with OME-XML metadata structures.
4  * %%
5  * Copyright © 2006 - 2016 Open Microscopy Environment:
6  * - Massachusetts Institute of Technology
7  * - National Institutes of Health
8  * - University of Dundee
9  * - Board of Regents of the University of Wisconsin-Madison
10  * - Glencoe Software, Inc.
11  * %%
12  * Redistribution and use in source and binary forms, with or without
13  * modification, are permitted provided that the following conditions are met:
14  *
15  * 1. Redistributions of source code must retain the above copyright notice,
16  * this list of conditions and the following disclaimer.
17  * 2. Redistributions in binary form must reproduce the above copyright notice,
18  * this list of conditions and the following disclaimer in the documentation
19  * and/or other materials provided with the distribution.
20  *
21  * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
22  * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
23  * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
24  * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
25  * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
26  * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
27  * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
28  * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
29  * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
30  * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
31  * POSSIBILITY OF SUCH DAMAGE.
32  *
33  * The views and conclusions contained in the software and documentation are
34  * those of the authors and should not be interpreted as representing official
35  * policies, either expressed or implied, of any organization.
36  * #L%
37  */
38 
39 /*─────────────────────────────────────────────────────────────────────────────
40  *
41  * THIS IS AUTOMATICALLY GENERATED CODE. DO NOT MODIFY.
42  *
43  *─────────────────────────────────────────────────────────────────────────────
44  */
45 
46 #ifndef OME_XML_MODEL_EXPERIMENT_H
47 #define OME_XML_MODEL_EXPERIMENT_H
48 
49 #include <algorithm>
50 #include <list>
51 #include <stdexcept>
52 #include <string>
53 #include <vector>
54 
55 #include <ome/common/log.h>
56 
57 #include <ome/common/xml/dom/Document.h>
58 #include <ome/common/xml/dom/Element.h>
59 #include <ome/common/xml/dom/Node.h>
60 #include <ome/common/xml/dom/NodeList.h>
61 
62 #include <ome/xml/model/primitives/Quantity.h>
63 
64 #include <ome/xml/model/Experimenter.h>
65 #include <ome/xml/model/detail/OMEModelObject.h>
66 #include <ome/xml/model/enums/ExperimentType.h>
67 
68 namespace ome
69 {
70  namespace xml
71  {
72  namespace model
73  {
74 
75  // Forward declarations.
76  class Image;
77  class MicrobeamManipulation;
78  class OMEModel;
79 
84  {
85  private:
86  class Impl;
88  ome::compat::shared_ptr<Impl> impl;
89 
90  public:
92  Experiment();
93 
99  Experiment (const Experiment& copy);
100 
102  virtual
103  ~Experiment ();
104 
119  static ome::compat::shared_ptr< Experiment>
120  create(const common::xml::dom::Element& element,
122 
123  // Documented in superclass.
124  const std::string&
125  elementName() const;
126 
127  // Documented in superclass.
128  bool
129  validElementName(const std::string& name) const;
130 
131  private:
133  Experiment&
134  operator= (const Experiment&);
135 
136  public:
137  // -- OMEModelObject API methods --
138 
140  virtual void
141  update(const common::xml::dom::Element& element,
143 
144  public:
145  // -- Experiment API methods --
146 
148  bool
149  link (ome::compat::shared_ptr<Reference>& reference,
150  ome::compat::shared_ptr< ome::xml::model::OMEModelObject>& object);
151 
157  ome::compat::shared_ptr<ome::xml::model::enums::ExperimentType>
158  getType ();
159 
165  const ome::compat::shared_ptr<ome::xml::model::enums::ExperimentType>
166  getType () const;
167 
173  void
174  setType (ome::compat::shared_ptr<ome::xml::model::enums::ExperimentType>& type);
175 
181  const std::string&
182  getID () const;
183 
189  void
190  setID (const std::string& id);
191 
197  ome::compat::shared_ptr<std::string>
198  getDescription ();
199 
205  const ome::compat::shared_ptr<std::string>
206  getDescription () const;
207 
213  void
214  setDescription (ome::compat::shared_ptr<std::string>& description);
215 
222  ome::compat::weak_ptr<ome::xml::model::Experimenter>
224 
231  const ome::compat::weak_ptr<ome::xml::model::Experimenter>
232  getLinkedExperimenter () const;
233 
239  void
240  linkExperimenter (ome::compat::shared_ptr<ome::xml::model::Experimenter>& experimenter);
241 
251  void
252  unlinkExperimenter (ome::compat::shared_ptr<ome::xml::model::Experimenter>& experimenter);
253 
259  std::vector<ome::compat::shared_ptr<ome::xml::model::MicrobeamManipulation> >::size_type
261 
268  std::vector<ome::compat::shared_ptr<ome::xml::model::MicrobeamManipulation> >&
270 
277  const std::vector<ome::compat::shared_ptr<ome::xml::model::MicrobeamManipulation> >&
279 
287  ome::compat::shared_ptr<ome::xml::model::MicrobeamManipulation>&
288  getMicrobeamManipulation (std::vector<ome::compat::shared_ptr<ome::xml::model::MicrobeamManipulation> >::size_type index);
289 
297  const ome::compat::shared_ptr<ome::xml::model::MicrobeamManipulation>&
298  getMicrobeamManipulation (std::vector<ome::compat::shared_ptr<ome::xml::model::MicrobeamManipulation> >::size_type index) const;
299 
307  void
308  setMicrobeamManipulation (std::vector<ome::compat::shared_ptr<ome::xml::model::MicrobeamManipulation> >::size_type index,
309  ome::compat::shared_ptr<ome::xml::model::MicrobeamManipulation>& microbeamManipulation);
310 
319  void
320  addMicrobeamManipulation (ome::compat::shared_ptr<ome::xml::model::MicrobeamManipulation>& microbeamManipulation);
321 
331  void
332  removeMicrobeamManipulation (ome::compat::shared_ptr<ome::xml::model::MicrobeamManipulation>& microbeamManipulation);
333 
340  sizeOfLinkedImageList () const;
341 
348  getLinkedImageList () const;
349 
357  const ome::compat::weak_ptr<ome::xml::model::Image>&
359 
370  const ome::compat::weak_ptr<ome::xml::model::Image>&
372  const ome::compat::shared_ptr<ome::xml::model::Image>& image_BackReference);
373 
384  bool
385  linkImage (const ome::compat::shared_ptr<ome::xml::model::Image>& image_BackReference);
386 
402  bool
403  unlinkImage (const ome::compat::shared_ptr<ome::xml::model::Image>& image_BackReference);
404 
407  asXMLElement (common::xml::dom::Document& document) const;
408 
409 
410  protected:
411  // Documented in base class.
414  common::xml::dom::Element& element) const;
415 
416  public:
417  // Documented in superclass.
418  const std::string&
419  getXMLNamespace() const;
420  };
421 
422  }
423  }
424 }
425 
426 #endif // OME_XML_MODEL_EXPERIMENT_H
427 
428 /*
429  * Local Variables:
430  * mode:C++
431  * End:
432  */
ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > & getMicrobeamManipulation(std::vector< ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > >::size_type index)
Get MicrobeamManipulation.
Definition: Experiment.cpp:406
OME model interface (abstract top-level container)
Definition: OMEModel.h:62
void addMicrobeamManipulation(ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation)
Add MicrobeamManipulation.
Definition: Experiment.cpp:427
OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type getLinkedImageList() const
Get the linked Image list.
Definition: Experiment.cpp:452
const ome::compat::weak_ptr< ome::xml::model::Image > & setLinkedImage(OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)
Set linked Image.
Definition: Experiment.cpp:464
virtual void update(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Update the object hierarchy recursively from an XML DOM tree.
Definition: Experiment.cpp:203
static ome::compat::shared_ptr< Experiment > create(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Create a Experiment model object from DOM element.
Definition: Experiment.cpp:179
const std::string & getXMLNamespace() const
Get the XML namespace for this model object.
Definition: Experiment.cpp:595
OME model object (concrete implementation).
Definition: OMEModelObject.h:64
boost::multi_index_container< Ptr< T >, boost::multi_index::indexed_by< boost::multi_index::random_access<>, boost::multi_index::ordered_unique< boost::multi_index::identity< Ptr< T > >, ome::compat::owner_less< Ptr< T > > > > > type
Multi-index container type.
Definition: OMEModelObject.h:94
void setType(ome::compat::shared_ptr< ome::xml::model::enums::ExperimentType > &type)
Set the Type property.
Definition: Experiment.cpp:317
void linkExperimenter(ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter)
Link Experimenter.
Definition: Experiment.cpp:372
bool validElementName(const std::string &name) const
Check if a given element name is valid for processing by this model object.
Definition: Experiment.cpp:195
bool link(ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)
Link a given OME model object to this model object.
Definition: Experiment.cpp:277
ome::compat::shared_ptr< ome::xml::model::enums::ExperimentType > getType()
Get the Type property.
Definition: Experiment.cpp:303
const std::string & getID() const
Get the ID property.
Definition: Experiment.cpp:324
OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type::size_type sizeOfLinkedImageList() const
Get size of linked Image list.
Definition: Experiment.cpp:446
const ome::compat::weak_ptr< ome::xml::model::Image > & getLinkedImage(OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type::size_type index) const
Get linked Image.
Definition: Experiment.cpp:458
std::vector< ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > >::size_type sizeOfMicrobeamManipulationList() const
Get size of linked MicrobeamManipulation list.
Definition: Experiment.cpp:388
void removeMicrobeamManipulation(ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation)
Remove MicrobeamManipulation.
Definition: Experiment.cpp:435
Experiment model object.
Definition: Experiment.h:83
Multi-index container for efficient ordered insertion and deletion of model object references...
Definition: OMEModelObject.h:85
ome::compat::shared_ptr< std::string > getDescription()
Get the Description property.
Definition: Experiment.cpp:338
void setID(const std::string &id)
Set the ID property.
Definition: Experiment.cpp:331
ome::compat::shared_ptr< Impl > impl
Private implementation details.
Definition: Experiment.h:86
Open Microscopy Environment C++ implementation.
Private implementation details of Experiment model object.
Definition: Experiment.cpp:81
bool unlinkImage(const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)
Unlink Image.
Definition: Experiment.cpp:487
Experiment & operator=(const Experiment &)
Assignment operator (deleted).
void unlinkExperimenter(ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter)
Unlink Experimenter.
Definition: Experiment.cpp:378
bool linkImage(const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)
Link Image.
Definition: Experiment.cpp:474
void setDescription(ome::compat::shared_ptr< std::string > &description)
Set the Description property.
Definition: Experiment.cpp:352
Experiment()
Default constructor.
Definition: Experiment.cpp:155
ome::compat::weak_ptr< ome::xml::model::Experimenter > getLinkedExperimenter()
Get linked Experimenter.
Definition: Experiment.cpp:359
virtual common::xml::dom::Element asXMLElementInternal(common::xml::dom::Document &document, common::xml::dom::Element &element) const
Transform the object hierarchy rooted at this element to XML.
Definition: Experiment.cpp:510
virtual ~Experiment()
Destructor.
Definition: Experiment.cpp:174
void setMicrobeamManipulation(std::vector< ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > >::size_type index, ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation)
Set MicrobeamManipulation.
Definition: Experiment.cpp:418
std::vector< ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > > & getMicrobeamManipulationList()
Get the MicrobeamManipulation list.
Definition: Experiment.cpp:394
virtual common::xml::dom::Element asXMLElement(common::xml::dom::Document &document) const
Transform the object hierarchy rooted at this element to XML.
Definition: Experiment.cpp:503
const std::string & elementName() const
Get the element name of this model object.
Definition: Experiment.cpp:188