<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet href="http://cvs.openmicroscopy.org.uk/snapshots/omero/editor/xsl/cpeEditor2html.xsl" type="text/xsl"?>
<!DOCTYPE protocol-archive PUBLIC "-//Common Protocol Exchange Format//DTD upe 1.0//EN" "http://genome.tugraz.at/iLAP/cpe/cpe.dtd">
<protocol-archive>
    <archive-info>
        <archive-version>1.0</archive-version>
        <archive-date>1237084852495</archive-date>
        <archive-creator>OMERO.editor</archive-creator>
        <archive-type>PROTOCOL_ARCHIVE</archive-type>
    </archive-info>
    <protocol>
        <protocol-information>
            <name>Standard western blot procedure</name>
            <description> Protocol adapted from http://openwetware.org/wiki/Western_Blot_(immunoblot). Prior to running the western blotting experiment, consult with the vendor in order to determine if they have optimized the titration for the antibody you just purchased. Most vendors should offer some guideline for how to use the antibody. Value your time and effort first and foremost. If the experiment comes out strange, make the call or email the vendor for assistance. Your time is the most valuable element to the procedure!</description>
            <experiment-information>
                <experiment-date>1236819629094</experiment-date>
                <investigator-name>Will Moore</investigator-name>
            </experiment-information>
        </protocol-information>
        <steps>
            <step>
                <name>Load Gel</name>
                <description>Load [[0]] prepared from fresh buffers. Resolve proteins on the gel voltage gradient. </description>
                <parameter-list>
                    <parameter>
                        <name>param</name>
                        <id>0</id>
                        <necessity>OPTIONAL</necessity>
                        <param-type>ENUMERATION</param-type>
                        <data>
                            <value>50 ug tissue extract</value>
                        </data>
                        <enum-list>
                            <enum>50 ug whole cell lysate</enum>
                            <enum>50 ug tissue extract</enum>
                            <enum>20 ug of nuclear extract</enum>
                        </enum-list>
                    </parameter>
                </parameter-list>
                <step-type>SINGLE_STEP</step-type>
            </step>
            <step>
                <description>Run lane number [[1]] with sample [[2]].</description>
                <parameter-table>
                    <parameter>
                        <name>Lane number</name>
                        <id>1</id>
                        <necessity>OPTIONAL</necessity>
                        <param-type>TEXT</param-type>
                        <data>
                            <value>1</value>
                            <value>2</value>
                            <value>3</value>
                            <value>4</value>
                            <value>5</value>
                            <value>6</value>
                            <value>7</value>
                            <value>8</value>
                        </data>
                    </parameter>
                    <parameter>
                        <name>Sample name</name>
                        <id>2</id>
                        <necessity>OPTIONAL</necessity>
                        <param-type>TEXT</param-type>
                        <data>
                            <value>control siRNAi</value>
                            <value>INCENP siRNAi</value>
                            <value>Aurora-B siRNAi</value>
                            <value>Survivin siRNAi</value>
                            <value>control siRNAi</value>
                            <value>INCENP siRNAi</value>
                            <value>Aurora-B siRNAi</value>
                            <value>Survivin siRNAi</value>
                        </data>
                    </parameter>
                </parameter-table>
                <notes>
                    <note>
                        <name>Duplicate lanes</name>
                        <content>Ran each sample twice. Once on each half of the blot, so that the gel could be cut in half and blotted with 2 different antibodies. </content>
                    </note>
                </notes>
                <step-type>STEP_GROUP</step-type>
                <step-children>
                    <step>
                        <description>Transfer proteins to a nitrocellulose or PVDF membrane and block in fresh 5% milk TTBS 2 hr, r.t. or overnight at 4C. Perform 3 shake rinses and drain until no residual milk appears to stream off the wash buffer. </description>
                        <step-type>SINGLE_STEP</step-type>
                    </step>
                </step-children>
            </step>
            <step>
                <name>Antibody incubation</name>
                <description>If using different antibodies for different lanes [[3]] cut membrane accordingly. Incubate the primary antibody [[4]] 1:200-20000 in fresh 5% milk TTBS for 120 minutes room temperature. Perform 3 shake rinses followed by wash with cold TTBS 4X for 5 minutes each wash. Incubate the secondary antibody [[5]] in fresh 5% milk TTBS for 60 minutes at room temperature. Perform 3 shake rinses followed by wash with cold TTBS 4X for 5 minutes each wash. </description>
                <parameter-table>
                    <parameter>
                        <name>lanes</name>
                        <id>3</id>
                        <necessity>OPTIONAL</necessity>
                        <param-type>TEXT</param-type>
                        <data>
                            <value>1-4</value>
                            <value>5-8</value>
                        </data>
                    </parameter>
                    <parameter>
                        <name>primary antibody</name>
                        <id>4</id>
                        <necessity>OPTIONAL</necessity>
                        <param-type>TEXT</param-type>
                        <data>
                            <value>Anti-INCENP</value>
                            <value>Anti-H3</value>
                        </data>
                    </parameter>
                    <parameter>
                        <name>param</name>
                        <id>5</id>
                        <necessity>OPTIONAL</necessity>
                        <param-type>ENUMERATION</param-type>
                        <data>
                            <value>1:2000 anti-mouse</value>
                            <value>1:5000 anti-rabbit</value>
                        </data>
                        <default-value>1:2000 anti-mouse</default-value>
                        <enum-list>
                            <enum>1:2000 anti-mouse</enum>
                            <enum>1:5000 anti-rabbit</enum>
                            <enum>1:5000 anti-goat</enum>
                        </enum-list>
                    </parameter>
                </parameter-table>
                <step-type>STEP_GROUP</step-type>
                <step-children>
                    <step>
                        <description>Perform ECL using a suitable chemiluminescent reagent </description>
                        <step-type>SINGLE_STEP</step-type>
                    </step>
                    <step>
                        <description>Optimize protein signal with multiple exposure times. </description>
                        <step-type>SINGLE_STEP</step-type>
                    </step>
                </step-children>
            </step>
        </steps>
    </protocol>
</protocol-archive>
