## Uses of Class
loci.formats.CoreMetadata

- Packages that use CoreMetadata
  Package | Description
  --- | ---
  loci.formats | Bio-Formats: a library for reading and writing popular microscopy file formats.
  loci.formats.dicom |
  loci.formats.in | Package containing Bio-Formats file format readers.
  loci.formats.in.LeicaMicrosystemsMetadata |
  loci.formats.services |
  loci.formats.tools | Package containing utility methods corresponding to the Bio-Formats command line tools.

- - ### Uses of CoreMetadata in loci.formats

    Subclasses of CoreMetadata in loci.formats
    Modifier and Type | Class and Description
    --- | ---
    `class` | `SwappableMetadata` Extends `CoreMetadata` to include the notion of an "input order" for planes: the input order being the order planes are stored on disk.

    Fields in loci.formats with type parameters of type CoreMetadata
    Modifier and Type | Field and Description
    --- | ---
    `(package private) static java.util.Comparator<CoreMetadata>` | CoreMetadataList.`comparator`
    `private java.util.ArrayList<CoreMetadata>` | FileStitcher.`core` Core metadata.
    `private java.util.List<CoreMetadata>` | DimensionSwapper.`core` Core metadata associated with this dimension swapper.
    `protected java.util.List<CoreMetadata>` | FormatReader.`core` Core metadata values.

    Methods in loci.formats that return CoreMetadata
    Modifier and Type | Method and Description
    --- | ---
    `CoreMetadata` | SwappableMetadata.`clone(IFormatReader r, int coreIndex)`
    `CoreMetadata` | CoreMetadata.`clone(IFormatReader r, int coreIndex)`
    `protected CoreMetadata` | SubResolutionFormatReader.`getCurrentCore()` Get the CoreMetadata corresponding to the current series and resolution
    `protected CoreMetadata` | FormatReader.`getCurrentCore()` Get the CoreMetadata corresponding to the current series and resolution

    Methods in loci.formats that return types with arguments of type CoreMetadata
    Modifier and Type | Method and Description
    --- | ---
    `java.util.List<CoreMetadata>` | FileStitcher.`getCoreMetadataList()`
    `java.util.List<CoreMetadata>` | DimensionSwapper.`getCoreMetadataList()`
    `java.util.List<CoreMetadata>` | WrappedReader.`getCoreMetadataList()`
    `java.util.List<CoreMetadata>` | SubResolutionFormatReader.`getCoreMetadataList()`
    `java.util.List<CoreMetadata>` | ReaderWrapper.`getCoreMetadataList()`
    `java.util.List<CoreMetadata>` | ImageReader.`getCoreMetadataList()`
    `java.util.List<CoreMetadata>` | IFormatReader.`getCoreMetadataList()` Deprecated. Reader internals should not be accessed by reader users
    `java.util.List<CoreMetadata>` | FormatReader.`getCoreMetadataList()`
    `java.util.List<CoreMetadata>` | CoreMetadataList.`getFlattenedList()`
    `java.util.List<CoreMetadata>` | CoreMetadataList.`getSeriesList()`

    Methods in loci.formats with parameters of type CoreMetadata
    Modifier and Type | Method and Description
    --- | ---
    `void` | CoreMetadataList.`add(int i1, CoreMetadata value)` Add a secondary array element to the specified primary array
    `static void` | MetadataTools.`populateMetadata(MetadataStore store, int series, java.lang.String imageName, CoreMetadata coreMeta)` Populates the given `MetadataStore`, for the specified series, using the values from the provided `CoreMetadata`.

    Method parameters in loci.formats with type arguments of type CoreMetadata
    Modifier and Type | Method and Description
    --- | ---
    `void` | CoreMetadataList.`setFlattenedList(java.util.List<CoreMetadata> list)`

    Constructors in loci.formats with parameters of type CoreMetadata
    Constructor and Description
    `CoreMetadata(CoreMetadata c)`

    Constructor parameters in loci.formats with type arguments of type CoreMetadata
    Constructor and Description
    `CoreMetadataList(java.util.List<CoreMetadata> list)`

  - ### Uses of CoreMetadata in loci.formats.dicom

    Fields in loci.formats.dicom declared as CoreMetadata
    Modifier and Type | Field and Description
    --- | ---
    `CoreMetadata` | DicomFileInfo.`coreMetadata`

  - ### Uses of CoreMetadata in loci.formats.in

    Subclasses of CoreMetadata in loci.formats.in
    Modifier and Type | Class and Description
    --- | ---
    `private class` | `OMETiffReader.OMETiffCoreMetadata`
    `(package private) class` | `SVSCoreMetadata`

    Fields in loci.formats.in declared as CoreMetadata
    Modifier and Type | Field and Description
    --- | ---
    `CoreMetadata` | VolocityReader.Stack.`core`

    Fields in loci.formats.in with type parameters of type CoreMetadata
    Modifier and Type | Field and Description
    --- | ---
    `private java.util.List<CoreMetadata>` | LeicaHandler.`core`

    Methods in loci.formats.in that return types with arguments of type CoreMetadata
    Modifier and Type | Method and Description
    --- | ---
    `java.util.List<CoreMetadata>` | LeicaHandler.`getCoreMetadataList()`
    `java.util.List<CoreMetadata>` | FilePatternReader.`getCoreMetadataList()`

    Methods in loci.formats.in with parameters of type CoreMetadata
    Modifier and Type | Method and Description
    --- | ---
    `private void` | ZeissCZIReader.`convertPixelType(CoreMetadata ms0, int pixelType)`
    `private void` | KLBReader.`convertPixelType(CoreMetadata ms0, int pixelType)`
    `private void` | KLBReader.`readHeader(CoreMetadata coreMeta)`
    `private void` | DicomReader.`updateCoreMetadata(CoreMetadata ms)`

    Constructors in loci.formats.in with parameters of type CoreMetadata
    Constructor and Description
    `OMETiffCoreMetadata(CoreMetadata copy)`

  - ### Uses of CoreMetadata in loci.formats.in.LeicaMicrosystemsMetadata

    Methods in loci.formats.in.LeicaMicrosystemsMetadata that return types with arguments of type CoreMetadata
    Modifier and Type | Method and Description
    --- | ---
    `java.util.List<CoreMetadata>` | LMSFileReader.`getCore()`

    Methods in loci.formats.in.LeicaMicrosystemsMetadata with parameters of type CoreMetadata
    Modifier and Type | Method and Description
    --- | ---
    `void` | MultipleImagesReader.`setCoreMetadata(CoreMetadata cmd)`

    Method parameters in loci.formats.in.LeicaMicrosystemsMetadata with type arguments of type CoreMetadata
    Modifier and Type | Method and Description
    --- | ---
    `void` | LMSFileReader.`setCore(java.util.ArrayList<CoreMetadata> core)`

  - ### Uses of CoreMetadata in loci.formats.services

    Methods in loci.formats.services with parameters of type CoreMetadata
    Modifier and Type | Method and Description
    --- | ---
    `void` | OMEXMLServiceImpl.`addModuloAlong(OMEXMLMetadata meta, CoreMetadata core, int imageIdx)`
    `void` | OMEXMLService.`addModuloAlong(OMEXMLMetadata omexmlMeta, CoreMetadata core, int image)` Adds ModuloAlong* annotations to the given OME-XML metadata object, using the given CoreMetadata object to determine modulo dimensions.

  - ### Uses of CoreMetadata in loci.formats.tools

    Methods in loci.formats.tools with parameters of type CoreMetadata
    Modifier and Type | Method and Description
    --- | ---
    `private IMetadata` | MakeTestOmeTiff.`createMetadata(java.lang.String name, CoreMetadata info)`
    `private java.awt.image.BufferedImage` | MakeTestOmeTiff.`createPlane(java.lang.String name, CoreMetadata info, int no)`
    `private OMETiffWriter` | MakeTestOmeTiff.`createWriter(java.lang.String name, CoreMetadata info, java.lang.String id)`
    `void` | MakeTestOmeTiff.`makeOmeTiff(java.lang.String name, CoreMetadata info)`
    `private void` | MakeTestOmeTiff.`writeData(java.lang.String name, CoreMetadata info, java.lang.String id, OMETiffWriter out)`

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