# Uses of Package
loci.formats.in

- Packages that use loci.formats.in
  Package | Description
  --- | ---
  loci.formats | Bio-Formats: a library for reading and writing popular microscopy file formats.
  loci.formats.in | Package containing Bio-Formats file format readers.
  loci.formats.in.LeicaMicrosystemsMetadata |

- Classes in loci.formats.in used by loci.formats
  Class and Description
  MetadataLevel
  MetadataOptions Holds metadata-related options.

- Classes in loci.formats.in used by loci.formats.in
  Class and Description
  AmiraReader.PlaneReader This is the common interface for all formats, compressed or not.
  APNGReader.PNGBlock
  APNGReader.PNGInputStream InputStream implementation that stitches together IDAT blocks into a seamless zlib stream.
  BaseTiffReader BaseTiffReader is the superclass for file format readers compatible with or derived from the TIFF 6.0 file format.
  BaseZeissReader BaseZeissReader contains common functionality required by readers for Zeiss AxioVision formats.
  BaseZeissReader.Charset
  BaseZeissReader.Context
  BaseZeissReader.DrawStyle Line drawing styles.
  BaseZeissReader.FeatureType Feature types.
  BaseZeissReader.FillStyle Fill styles.
  BaseZeissReader.Layer Layer class representing an AxioVision layer; used to contain a collection of shapes.
  BaseZeissReader.LineEndPositions
  BaseZeissReader.LineEndStyle Line ending styles.
  BaseZeissReader.PointStyle Point styles.
  BaseZeissReader.Shape Shape class representing the metadata within an AxioVision Shape ROI
  BaseZeissReader.Tag Content of a single tag from a Tags block.
  BaseZeissReader.TextAlignment
  BDVReader.H5Coordinate
  BIFormatReader BIFormatReader is the superclass for file format readers that use java.awt.image.BufferedImage as the native data type.
  BioRadReader.Note
  BMPReader BMPReader is the file format reader for Microsoft Bitmap (BMP) files.
  CellH5Reader.CellH5Coordinate
  CellomicsReader.ChannelFile
  CellSensReader.Pyramid
  CellSensReader.TileCoordinate
  CellVoyagerReader.AreaInfo
  CellVoyagerReader.ChannelInfo
  CellVoyagerReader.FieldInfo
  CellVoyagerReader.WellInfo
  CellWorxReader CellWorxReader is the file format reader for CellWorx .pnl files.
  ColumbusReader.Plane
  CV7000Reader.Channel
  CV7000Reader.Field
  CV7000Reader.LightSource
  CV7000Reader.Plane
  DeltavisionReader DeltavisionReader is the file format reader for Deltavision files.
  DeltavisionReader.DVExtHdrFields This private class structure holds the details for the extended header.
  FlexReader.FilterGroup Stores a grouping of filters.
  FlexReader.FlexFile
  FV1000Reader.ChannelData
  FV1000Reader.PlaneData
  GatanReader.ROIShape
  IM3Reader.ContainerRecord
  IM3Reader.IM3Record
  IM3Reader.Spectrum
  ImageIOReader ImageIOReader is the superclass for file format readers that use the javax.imageio package.
  InCellReader.Image
  JDCEReader.JDCEWell
  JDCEReader.PlaneMetadata
  LeicaHandler.Channel
  LeicaHandler.Detector
  LeicaHandler.Laser
  LeicaHandler.MultiBand
  LeicaHandler.ROI
  LeicaReader.Detector
  LeicaSCNReader.Dimension
  LeicaSCNReader.Image
  LeicaSCNReader.ImageCollection
  LeicaSCNReader.LeicaSCNHandler SAX handler for parsing XML in Leica SCN files.
  LeicaSCNReader.Pixels
  LiFlimReader.ROI
  LIFReader.MemoryBlock
  LIFReader.ROI
  LOFReader.MetadataSource
  MetadataLevel
  MetadataOptions Holds metadata-related options.
  MetamorphHandler MetamorphTiffReader is the file format reader for TIFF files produced by Metamorph software version 7.5 and above.
  MetamorphReader Reader is the file format reader for Metamorph STK files.
  MetamorphTiffReader.Well
  MIASReader.AnalysisFile
  MicromanagerReader.Index
  MicromanagerReader.Position
  MinimalTiffReader MinimalTiffReader is the superclass for file format readers compatible with or derived from the TIFF 6.0 file format.
  MNGReader.SeriesInfo
  ND2Handler DefaultHandler implementation for handling XML produced by Nikon Elements.
  OBFReader.Stack
  OBFReader.State
  OIRReader.Channel
  OIRReader.CZTKey This is a class that wraps three numbers c,z,t and an object can be used as a key in a hashmap.
  OIRReader.Detector
  OIRReader.Laser
  OIRReader.Objective
  OIRReader.PixelBlock
  OlympusTileReader.Tile
  OMETiffReader.OMETiffCoreMetadata
  OMETiffReader.OMETiffPlane Structure containing details on where to find a particular image plane.
  OMEXMLReader.BinData
  OpenlabReader.PlaneInfo Helper class for storing plane info.
  OperettaReader.Channel
  OperettaReader.Plane
  PerkinElmerReader.PixelsFile
  PictReader PictReader is the file format reader for Apple PICT files.
  PrairieMetadata Metadata structure for Prairie Technologies' TIFF-based format.
  PrairieMetadata.Frame A Prairie `<Frame>`, beneath a `<Sequence>`.
  PrairieMetadata.PFile A Prairie `<File>` beneath a `<Frame>`.
  PrairieMetadata.Sequence A Prairie `<Sequence>`.
  PrairieMetadata.Value A value in a Prairie metadata dictionary.
  PrairieMetadata.ValueTable A table of values.
  SDTInfo SDTInfo encapsulates the header information for Becker & Hickl SPC-Image SDT files.
  SlideBook7Reader.CAlignManipRecord70
  SlideBook7Reader.CAnnotation70
  SlideBook7Reader.CChannelDef70
  SlideBook7Reader.CChannelRecord70
  SlideBook7Reader.CCompressionBase
  SlideBook7Reader.CCube
  SlideBook7Reader.CCubeAnnotation70
  SlideBook7Reader.CExposureRecord70
  SlideBook7Reader.CFluorDef70
  SlideBook7Reader.CFRAPRegionAnnotation70
  SlideBook7Reader.CFRETManipRecord70
  SlideBook7Reader.CHistogramRecord70
  SlideBook7Reader.CImageData
  SlideBook7Reader.CImageGroup
  SlideBook7Reader.CImageGroup.CAnnotations
  SlideBook7Reader.CImageGroup.CAuxDoubleData
  SlideBook7Reader.CImageGroup.CAuxFloatData
  SlideBook7Reader.CImageGroup.CAuxSInt32Data
  SlideBook7Reader.CImageGroup.CAuxSInt64Data
  SlideBook7Reader.CImageGroup.CAuxXmlData
  SlideBook7Reader.CImageGroup.CMaskPositions
  SlideBook7Reader.CImageRecord70
  SlideBook7Reader.ClassDecoder
  SlideBook7Reader.CLensDef70
  SlideBook7Reader.CMainViewRecord70
  SlideBook7Reader.CMaskRecord70
  SlideBook7Reader.CNpyHeader
  SlideBook7Reader.COptovarDef70
  SlideBook7Reader.CRatioManipRecord70
  SlideBook7Reader.CRemapChannelLUT70
  SlideBook7Reader.CRemapManipRecord70
  SlideBook7Reader.CRemapPoint
  SlideBook7Reader.CSBFile70
  SlideBook7Reader.CSBPoint
  SlideBook7Reader.CSlideRecord70
  SlideBook7Reader.CUnknownAnnotation70
  SlideBook7Reader.DataLoader
  SlideBook7Reader.EGraphicType
  SlideBook7Reader.IntIntPair
  SlideBook7Reader.StrIntPair
  SPEReader.SpeHeader SpeHeader holds a byte array containing the SPE binary data header along with associated methods for reading SPE Header Entry values in various formats
  SPEReader.SpeHeaderEntry SpeHeaderEntry is an Enum which provides a list of all available SPE header entries along with the offset value from the top of the header in bytes and their associated data type
  SPEReader.SpeHeaderType SpeHeaderType is an Enum representing the available data types stored in the SPE header
  SPEReader.SpeROI Private class to represent the data for a single ROI in the SPE format
  SVSReader SVSReader is the file format reader for Aperio SVS TIFF files.
  TecanReader.Channel
  TecanReader.Image
  TiffReader TiffReader is the file format reader for regular TIFF files, not of any specific TIFF variant.
  TissueFAXSReader.Channel
  TissueFAXSReader.ScanRegion
  VentanaReader.AreaOfInterest
  VentanaReader.Overlap
  VentanaReader.TIFFTile
  VolocityReader.Stack
  ZeissCZIReader.Attachment Segment with ID "ZISRAWATTACH".
  ZeissCZIReader.AttachmentEntry
  ZeissCZIReader.Channel
  ZeissCZIReader.Coordinate
  ZeissCZIReader.DimensionEntry
  ZeissCZIReader.DirectoryEntry
  ZeissCZIReader.Segment Top-level class that implements logic common to all types of Segment.
  ZeissCZIReader.SubBlock Segment with ID "ZISRAWSUBBLOCK".
  ZeissLSMReader.SubBlock
  ZeissTIFFHandler SAX handler for parsing XML in Zeiss TIFF files.
  ZeissTIFFHandler.Plane Metadata for a single image plane.
  ZeissTIFFHandler.Scaling Scaling metadata.
  ZeissTIFFHandler.Scaling.Dimension Scaling information for a single dimension.
  ZeissTIFFHandler.TagSet A collection of tags from a single Tags block.
  ZeissTIFFReader ZeissTIFFReader is the file format reader for Zeiss AxioVision TIFF files and their companion XML file.
  ZeissTIFFReader.Plane
  ZeissTIFFReader.TIFFInfo

- Classes in loci.formats.in used by loci.formats.in.LeicaMicrosystemsMetadata
  Class and Description
  MetadataLevel

Copyright © 2026 Open Microscopy Environment