## Uses of Class
loci.formats.in.PrairieMetadata.Sequence

- Packages that use PrairieMetadata.Sequence
  Package | Description
  --- | ---
  loci.formats.in | Package containing Bio-Formats file format readers.

- - ### Uses of PrairieMetadata.Sequence in loci.formats.in

    Fields in loci.formats.in declared as PrairieMetadata.Sequence
    Modifier and Type | Field and Description
    --- | ---
    `private PrairieMetadata.Sequence` | PrairieMetadata.`firstSequence` The first actual `<Sequence>` element.
    `private PrairieMetadata.Sequence` | PrairieMetadata.Frame.`sequence` The `<Sequence>` containing this `<Frame>`.

    Fields in loci.formats.in with type parameters of type PrairieMetadata.Sequence
    Modifier and Type | Field and Description
    --- | ---
    `private java.util.ArrayList<PrairieMetadata.Sequence>` | PrairieReader.`sequences` List of Prairie metadata `Sequence`s, ordered by cycle.
    `private java.util.HashMap<java.lang.Integer,PrairieMetadata.Sequence>` | PrairieMetadata.`sequences` `<Sequence>` elements, keyed on each sequence's `cycle`.

    Methods in loci.formats.in that return PrairieMetadata.Sequence
    Modifier and Type | Method and Description
    --- | ---
    `PrairieMetadata.Sequence` | PrairieMetadata.`getFirstSequence()` Gets the first `Sequence`.
    `PrairieMetadata.Sequence` | PrairieMetadata.Frame.`getSequence()` Gets the `<Sequence>` containing this `<Frame>`.
    `PrairieMetadata.Sequence` | PrairieMetadata.`getSequence(int cycle)` Gets the `Sequence` at the given `cycle`.
    `private PrairieMetadata.Sequence` | PrairieReader.`sequence(int s)` Gets the first sequence associated with the given series.
    `private PrairieMetadata.Sequence` | PrairieReader.`sequence(int t, int s)` Gets the sequence associated with the given series and time point.
    `private PrairieMetadata.Sequence` | PrairieReader.`sequence(int t, int p, int sizeP)` Gets the sequence associated with the given time point and stage position.

    Methods in loci.formats.in that return types with arguments of type PrairieMetadata.Sequence
    Modifier and Type | Method and Description
    --- | ---
    `java.util.ArrayList<PrairieMetadata.Sequence>` | PrairieMetadata.`getSequences()` Gets all `Sequences`, ordered by `cycle`.

    Methods in loci.formats.in with parameters of type PrairieMetadata.Sequence
    Modifier and Type | Method and Description
    --- | ---
    `private int` | PrairieReader.`frameIndex(PrairieMetadata.Sequence sequence, int z, int t, int s)` Gets the frame index associated with the given (Z, T) position of the specified series.
    `private void` | PrairieReader.`warnFile(PrairieMetadata.Sequence sequence, int index, int channel)` Emits a warning about a missing `<File>`.
    `private void` | PrairieReader.`warnFilename(PrairieMetadata.Sequence sequence, int index, int channel)` Emits a warning about a `<File>`'s missing `filename`.
    `private void` | PrairieReader.`warnFrame(PrairieMetadata.Sequence sequence, int index)` Emits a warning about a missing `<Frame>`.

    Constructors in loci.formats.in with parameters of type PrairieMetadata.Sequence
    Constructor and Description
    `Frame(PrairieMetadata.Sequence sequence, org.w3c.dom.Element frameElement)` Creates a new frame by parsing the given `<Frame>` element.

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