# Serialized Form

- ## Package loci.formats

  - ### Class loci.formats.FormatException extends java.lang.Exception implements Serializable

  - ### Class loci.formats.IllegalBlockException extends java.lang.IllegalArgumentException implements Serializable

  - ### Class loci.formats.MissingLibraryException extends FormatException implements Serializable

  - ### Class loci.formats.UnknownFormatException extends FormatException implements Serializable

  - ### Class loci.formats.UnsupportedCompressionException extends FormatException implements Serializable

- ## Package loci.formats.cache

  - ### Class loci.formats.cache.CacheException extends FormatException implements Serializable

- ## Package loci.formats.gui

  - ### Class loci.formats.gui.CacheComponent extends javax.swing.JPanel implements Serializable

    - ### Serialized Fields

      - #### cache

            Cache cache

        The cache that this component controls.

      - #### sourceChooser

            javax.swing.JComboBox<E> sourceChooser

        Combo box for choosing cache source.

      - #### strategyChooser

            javax.swing.JComboBox<E> strategyChooser

        Combo box for choosing cache strategy.

      - #### range

            javax.swing.JSpinner[] range

        Spinners for choosing range of slices to cache.

      - #### priority

            javax.swing.JComboBox<E>[] priority

        Combo boxes for choosing axis priority.

      - #### order

            javax.swing.JComboBox<E>[] order

        Combo boxes for choosing planar ordering.

      - #### id

            java.lang.String id

        File name that the cache is working with (debugging only).

      - #### lengths

            int[] lengths

        Length of each dimensional axis, obtained from cache strategy.

  - ### Class loci.formats.gui.CacheIndicator extends javax.swing.JComponent implements Serializable

    - ### Serialized Fields

      - #### cache

            Cache cache

      - #### axis

            int axis

      - #### comp

            java.awt.Component comp

      - #### lPad

            int lPad

      - #### rPad

            int rPad

  - ### Class loci.formats.gui.DataConverter extends javax.swing.JFrame implements Serializable

    - ### Serialized Fields

      - #### reader

            FileStitcher reader

      - #### swap

            DimensionSwapper swap

      - #### biReader

            BufferedImageReader biReader

      - #### writer

            ImageWriter writer

      - #### biWriter

            BufferedImageWriter biWriter

      - #### rc

            javax.swing.JFileChooser rc

      - #### wc

            javax.swing.JFileChooser wc

      - #### shutdown

            boolean shutdown

      - #### force

            boolean force

      - #### input

            javax.swing.JTextField input

      - #### output

            javax.swing.JTextField output

      - #### forceType

            javax.swing.JCheckBox forceType

      - #### includeZ

            javax.swing.JCheckBox includeZ

      - #### includeT

            javax.swing.JCheckBox includeT

      - #### includeC

            javax.swing.JCheckBox includeC

      - #### zLabel

            javax.swing.JLabel zLabel

      - #### tLabel

            javax.swing.JLabel tLabel

      - #### cLabel

            javax.swing.JLabel cLabel

      - #### zChoice

            javax.swing.JComboBox<E> zChoice

      - #### tChoice

            javax.swing.JComboBox<E> tChoice

      - #### cChoice

            javax.swing.JComboBox<E> cChoice

      - #### codec

            javax.swing.JComboBox<E> codec

      - #### fps

            javax.swing.JSpinner fps

      - #### series

            javax.swing.JSpinner series

      - #### seriesRow

            javax.swing.JPanel seriesRow

      - #### progress

            javax.swing.JProgressBar progress

      - #### convert

            javax.swing.JButton convert

  - ### Class loci.formats.gui.ImageViewer extends javax.swing.JFrame implements Serializable

    - ### Serialized Fields

      - #### pane

            javax.swing.JPanel pane

      - #### icon

            javax.swing.ImageIcon icon

      - #### iconLabel

            javax.swing.JLabel iconLabel

      - #### sliderPanel

            javax.swing.JPanel sliderPanel

      - #### nSlider

            javax.swing.JSlider nSlider

      - #### zSlider

            javax.swing.JSlider zSlider

      - #### tSlider

            javax.swing.JSlider tSlider

      - #### cSlider

            javax.swing.JSlider cSlider

      - #### probeLabel

            javax.swing.JLabel probeLabel

      - #### fileView

            javax.swing.JMenuItem fileView

      - #### fileSave

            javax.swing.JMenuItem fileSave

      - #### omeMeta

            MetadataStore omeMeta

        Attached OME metadata store, if available.

      - #### myReader

            BufferedImageReader myReader

        Current format reader.

      - #### myWriter

            BufferedImageWriter myWriter

        Current format writer.

      - #### fileReader

            IFormatReader fileReader

        Reader for files on disk.

      - #### fileWriter

            IFormatWriter fileWriter

        Writer for files on disk.

      - #### filename

            java.lang.String filename

      - #### in

            IFormatReader in

      - #### images

            java.awt.image.BufferedImage[] images

      - #### sizeZ

            int sizeZ

      - #### sizeT

            int sizeT

      - #### sizeC

            int sizeC

      - #### anim

            boolean anim

      - #### fps

            int fps

      - #### canCloseReader

            boolean canCloseReader

      - #### omexmlService

            OMEXMLService omexmlService

        Service for working with OME-XML metadata.

      - #### sb

            java.lang.StringBuilder sb

  - ### Class loci.formats.gui.PreviewPane extends javax.swing.JPanel implements Serializable

    - ### Serialized Fields

      - #### reader

            BufferedImageReader reader

        Reader for use when loading thumbnails.

      - #### loadId

            java.lang.String loadId

        Current ID to load.

      - #### lastId

            java.lang.String lastId

        Last ID loaded.

      - #### loader

            java.lang.Thread loader

        Thumbnail loading thread.

      - #### loaderAlive

            boolean loaderAlive

        Flag indicating whether loader thread should keep running.

      - #### refresher

            java.lang.Runnable refresher

        Method for syncing the view to the model.

      - #### iconLabel

            javax.swing.JLabel iconLabel

        Labels containing thumbnail and dimensional information.

      - #### formatLabel

            javax.swing.JLabel formatLabel

        Labels containing thumbnail and dimensional information.

      - #### resLabel

            javax.swing.JLabel resLabel

        Labels containing thumbnail and dimensional information.

      - #### zctLabel

            javax.swing.JLabel zctLabel

        Labels containing thumbnail and dimensional information.

      - #### typeLabel

            javax.swing.JLabel typeLabel

        Labels containing thumbnail and dimensional information.

      - #### icon

            javax.swing.ImageIcon icon

      - #### iconText

            java.lang.String iconText

      - #### formatText

            java.lang.String formatText

      - #### resText

            java.lang.String resText

      - #### zctText

            java.lang.String zctText

      - #### typeText

            java.lang.String typeText

      - #### iconTip

            java.lang.String iconTip

      - #### formatTip

            java.lang.String formatTip

      - #### resTip

            java.lang.String resTip

      - #### zctTip

            java.lang.String zctTip

      - #### typeTip

            java.lang.String typeTip

  - ### Class loci.formats.gui.TwoChannelColorSpace extends java.awt.color.ColorSpace implements Serializable

  - ### Class loci.formats.gui.XMLCellRenderer extends javax.swing.tree.DefaultTreeCellRenderer implements Serializable

  - ### Class loci.formats.gui.XMLWindow extends javax.swing.JFrame implements Serializable

    - ### Serialized Fields

      - #### doc

            org.w3c.dom.Document doc

- ## Package loci.formats.in

  - ### Class loci.formats.in.PrairieMetadata.ValueTable extends java.util.HashMap<java.lang.String,PrairieMetadata.Value> implements Serializable

- ## Package loci.formats.tiff

  - ### Class loci.formats.tiff.IFD extends java.util.HashMap<java.lang.Integer,java.lang.Object> implements Serializable

  - ### Class loci.formats.tiff.IFDList extends java.util.ArrayList<IFD> implements Serializable

  - ### Class loci.formats.tiff.TiffRational extends java.lang.Number implements Serializable

    - ### Serialized Fields

      - #### numer

            long numer

        Components of the rational's fractional representation.

      - #### denom

            long denom

        Components of the rational's fractional representation.

- ## Package loci.formats.tools

  - ### Class loci.formats.tools.EditTiffG extends javax.swing.JFrame implements Serializable

    - ### Serialized Fields

      - #### textArea

            javax.swing.JTextArea textArea

      - #### fileBox

            javax.swing.JFileChooser fileBox

      - #### file

            java.io.File file

- ## Package loci.plugins.config

  - ### Class loci.plugins.config.ConfigWindow extends javax.swing.JFrame implements Serializable

    - ### Serialized Fields

      - #### formatsListModel

            javax.swing.DefaultListModel<E> formatsListModel

      - #### formatsList

            javax.swing.JList<E> formatsList

      - #### formatInfo

            javax.swing.JPanel formatInfo

      - #### extensions

            javax.swing.JTextField extensions

      - #### sliceLabel

            javax.swing.JTextField sliceLabel

      - #### enabledBox

            javax.swing.JCheckBox enabledBox

      - #### windowlessBox

            javax.swing.JCheckBox windowlessBox

      - #### upgradeBox

            javax.swing.JCheckBox upgradeBox

      - #### libsListModel

            javax.swing.DefaultListModel<E> libsListModel

      - #### libsList

            javax.swing.JList<E> libsList

      - #### type

            javax.swing.JTextField type

      - #### status

            javax.swing.JTextField status

      - #### version

            javax.swing.JTextField version

      - #### path

            javax.swing.JTextField path

      - #### url

            javax.swing.JTextField url

      - #### license

            javax.swing.JTextField license

      - #### notes

            javax.swing.JTextArea notes

      - #### installButton

            javax.swing.JButton installButton

      - #### setSliceLabelButton

            javax.swing.JButton setSliceLabelButton

      - #### resetSliceLabelButton

            javax.swing.JButton resetSliceLabelButton

      - #### log

            java.io.PrintWriter log

  - ### Class loci.plugins.config.InstallWizard extends javax.swing.JFrame implements Serializable

- ## Package loci.plugins.in

  - ### Class loci.plugins.in.ImporterMetadata extends java.util.HashMap<java.lang.String,java.lang.Object> implements Serializable

- ## Package loci.plugins.shortcut

  - ### Class loci.plugins.shortcut.ShortcutPanel extends javax.swing.JPanel implements Serializable

  - ### Class loci.plugins.shortcut.ShortcutTransferHandler extends javax.swing.TransferHandler implements Serializable

    - ### Serialized Fields

      - #### shortcutPanel

            ShortcutPanel shortcutPanel

        Associated shortcut panel.

- ## Package loci.plugins.util

  - ### Class loci.plugins.util.BrowserOptionsWindow extends javax.swing.JFrame implements Serializable

  - ### Class loci.plugins.util.DataBrowser extends ij.gui.StackWindow implements Serializable

    - ### Serialized Fields

      - #### fpsSpin

            javax.swing.JSpinner fpsSpin

      - #### animate

            java.awt.Button animate

      - #### options

            java.awt.Button options

      - #### metadata

            java.awt.Button metadata

      - #### anim

            boolean anim

      - #### allowShow

            boolean allowShow

      - #### metaWindow

            XMLWindow metaWindow

      - #### optionsWindow

            BrowserOptionsWindow optionsWindow

      - #### xml

            java.lang.String xml

      - #### zScroll

            java.awt.Scrollbar zScroll

      - #### cScroll

            java.awt.Scrollbar cScroll

      - #### tScroll

            java.awt.Scrollbar tScroll

      - #### cSliders

            java.awt.Scrollbar[] cSliders

      - #### cLengths

            int[] cLengths

      - #### cIndex

            int[] cIndex

  - ### Class loci.plugins.util.SearchableWindow extends ij.text.TextWindow implements Serializable

    - ### Serialized Fields

      - #### panel

            ij.text.TextPanel panel

      - #### index

            int index

- ## Package org.libjpegturbo.turbojpeg

  - ### Class org.libjpegturbo.turbojpeg.TJTransform extends java.awt.Rectangle implements Serializable

    serialVersionUID:
      -127367705761430371L

    - ### Serialized Fields

      - #### op

            int op

        Transform operation (one of `OP_*`)

      - #### options

            int options

        Transform options (bitwise OR of one or more of `OPT_*`)

      - #### cf

            TJCustomFilter cf

        Custom filter instance

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