bioformats  5.1.8
Screen.h
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3  * OME-XML C++ library for working with OME-XML metadata structures.
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38 
39 /*─────────────────────────────────────────────────────────────────────────────
40  *
41  * THIS IS AUTOMATICALLY GENERATED CODE. DO NOT MODIFY.
42  *
43  *─────────────────────────────────────────────────────────────────────────────
44  */
45 
46 #ifndef OME_XML_MODEL_SCREEN_H
47 #define OME_XML_MODEL_SCREEN_H
48 
49 #include <algorithm>
50 #include <list>
51 #include <stdexcept>
52 #include <string>
53 #include <vector>
54 
55 #include <ome/common/log.h>
56 
57 #include <ome/common/xml/dom/Document.h>
58 #include <ome/common/xml/dom/Element.h>
59 #include <ome/common/xml/dom/Node.h>
60 #include <ome/common/xml/dom/NodeList.h>
61 
62 #include <ome/xml/model/detail/OMEModelObject.h>
63 
64 namespace ome
65 {
66  namespace xml
67  {
68  namespace model
69  {
70 
71  // Forward declarations.
72  class Annotation;
73  class OMEModel;
74  class Plate;
75  class Reagent;
76 
81  {
82  private:
83  class Impl;
85  ome::compat::shared_ptr<Impl> impl;
86 
87  public:
89  Screen();
90 
96  Screen (const Screen& copy);
97 
99  virtual
100  ~Screen ();
101 
116  static ome::compat::shared_ptr< Screen>
117  create(const common::xml::dom::Element& element,
119 
120  // Documented in superclass.
121  const std::string&
122  elementName() const;
123 
124  // Documented in superclass.
125  bool
126  validElementName(const std::string& name) const;
127 
128 
129  // -- OMEModelObject API methods --
130 
132  virtual void
133  update(const common::xml::dom::Element& element,
135 
136  public:
137  // -- Screen API methods --
138 
140  bool
141  link (ome::compat::shared_ptr<Reference>& reference,
142  ome::compat::shared_ptr< ome::xml::model::OMEModelObject>& object);
143 
149  ome::compat::shared_ptr<std::string>
150  getName ();
151 
157  const ome::compat::shared_ptr<std::string>
158  getName () const;
159 
165  void
166  setName (ome::compat::shared_ptr<std::string>& name);
167 
173  ome::compat::shared_ptr<std::string>
175 
181  const ome::compat::shared_ptr<std::string>
182  getProtocolDescription () const;
183 
189  void
190  setProtocolDescription (ome::compat::shared_ptr<std::string>& protocolDescription);
191 
197  ome::compat::shared_ptr<std::string>
199 
205  const ome::compat::shared_ptr<std::string>
206  getProtocolIdentifier () const;
207 
213  void
214  setProtocolIdentifier (ome::compat::shared_ptr<std::string>& protocolIdentifier);
215 
221  ome::compat::shared_ptr<std::string>
223 
229  const ome::compat::shared_ptr<std::string>
230  getReagentSetDescription () const;
231 
237  void
238  setReagentSetDescription (ome::compat::shared_ptr<std::string>& reagentSetDescription);
239 
245  ome::compat::shared_ptr<std::string>
246  getType ();
247 
253  const ome::compat::shared_ptr<std::string>
254  getType () const;
255 
261  void
262  setType (ome::compat::shared_ptr<std::string>& type);
263 
269  const std::string&
270  getID () const;
271 
277  void
278  setID (const std::string& id);
279 
285  ome::compat::shared_ptr<std::string>
287 
293  const ome::compat::shared_ptr<std::string>
294  getReagentSetIdentifier () const;
295 
301  void
302  setReagentSetIdentifier (ome::compat::shared_ptr<std::string>& reagentSetIdentifier);
303 
309  ome::compat::shared_ptr<std::string>
310  getDescription ();
311 
317  const ome::compat::shared_ptr<std::string>
318  getDescription () const;
319 
325  void
326  setDescription (ome::compat::shared_ptr<std::string>& description);
327 
333  std::vector<ome::compat::shared_ptr<ome::xml::model::Reagent> >::size_type
334  sizeOfReagentList () const;
335 
342  std::vector<ome::compat::shared_ptr<ome::xml::model::Reagent> >&
343  getReagentList ();
344 
351  const std::vector<ome::compat::shared_ptr<ome::xml::model::Reagent> >&
352  getReagentList () const;
353 
361  ome::compat::shared_ptr<ome::xml::model::Reagent>&
362  getReagent (std::vector<ome::compat::shared_ptr<ome::xml::model::Reagent> >::size_type index);
363 
371  const ome::compat::shared_ptr<ome::xml::model::Reagent>&
372  getReagent (std::vector<ome::compat::shared_ptr<ome::xml::model::Reagent> >::size_type index) const;
373 
381  void
382  setReagent (std::vector<ome::compat::shared_ptr<ome::xml::model::Reagent> >::size_type index,
383  ome::compat::shared_ptr<ome::xml::model::Reagent>& reagent);
384 
393  void
394  addReagent (ome::compat::shared_ptr<ome::xml::model::Reagent>& reagent);
395 
405  void
406  removeReagent (ome::compat::shared_ptr<ome::xml::model::Reagent>& reagent);
407 
414  sizeOfLinkedPlateList () const;
415 
422  getLinkedPlateList () const;
423 
431  const ome::compat::weak_ptr<ome::xml::model::Plate>&
433 
444  const ome::compat::weak_ptr<ome::xml::model::Plate>&
446  const ome::compat::shared_ptr<ome::xml::model::Plate>& plate);
447 
458  bool
459  linkPlate (const ome::compat::shared_ptr<ome::xml::model::Plate>& plate);
460 
476  bool
477  unlinkPlate (const ome::compat::shared_ptr<ome::xml::model::Plate>& plate);
478 
486 
493  getLinkedAnnotationList () const;
494 
502  const ome::compat::weak_ptr<ome::xml::model::Annotation>&
504 
515  const ome::compat::weak_ptr<ome::xml::model::Annotation>&
517  const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
518 
529  bool
530  linkAnnotation (const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
531 
547  bool
548  unlinkAnnotation (const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
549 
550 
553  asXMLElement (common::xml::dom::Document& document) const;
554 
555 
556  protected:
557  // Documented in base class.
560  common::xml::dom::Element& element) const;
561 
562  public:
563  // Documented in superclass.
564  const std::string&
565  getXMLNamespace() const;
566  };
567 
568  }
569  }
570 }
571 
572 #endif // OME_XML_MODEL_SCREEN_H
573 
574 /*
575  * Local Variables:
576  * mode:C++
577  * End:
578  */
OME model interface (abstract top-level container)
Definition: OMEModel.h:62
const std::string & elementName() const
Get the element name of this model object.
Definition: Screen.cpp:219
const std::string & getID() const
Get the ID property.
Definition: Screen.cpp:519
std::vector< ome::compat::shared_ptr< ome::xml::model::Reagent > > & getReagentList()
Get the Reagent list.
Definition: Screen.cpp:581
const ome::compat::weak_ptr< ome::xml::model::Plate > & getLinkedPlate(OMEModelObject::indexed_container< ome::xml::model::Plate, ome::compat::weak_ptr >::type::size_type index) const
Get linked Plate.
Definition: Screen.cpp:645
ome::compat::shared_ptr< std::string > getType()
Get the Type property.
Definition: Screen.cpp:498
ome::compat::shared_ptr< ome::xml::model::Reagent > & getReagent(std::vector< ome::compat::shared_ptr< ome::xml::model::Reagent > >::size_type index)
Get Reagent.
Definition: Screen.cpp:593
const ome::compat::weak_ptr< ome::xml::model::Plate > & setLinkedPlate(OMEModelObject::indexed_container< ome::xml::model::Plate, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Plate > &plate)
Set linked Plate.
Definition: Screen.cpp:651
DOM Document wrapper.
Definition: Document.h:83
DOM Element wrapper.
Definition: Element.h:66
ome::compat::shared_ptr< std::string > getReagentSetDescription()
Get the ReagentSetDescription property.
Definition: Screen.cpp:477
OME model object (concrete implementation).
Definition: OMEModelObject.h:64
Screen()
Default constructor.
Definition: Screen.cpp:186
boost::multi_index_container< Ptr< T >, boost::multi_index::indexed_by< boost::multi_index::random_access<>, boost::multi_index::ordered_unique< boost::multi_index::identity< Ptr< T > >, ome::compat::owner_less< Ptr< T > > > > > type
Multi-index container type.
Definition: OMEModelObject.h:94
void setDescription(ome::compat::shared_ptr< std::string > &description)
Set the Description property.
Definition: Screen.cpp:568
virtual void update(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Update the object hierarchy recursively from an XML DOM tree.
Definition: Screen.cpp:235
virtual common::xml::dom::Element asXMLElementInternal(common::xml::dom::Document &document, common::xml::dom::Element &element) const
Transform the object hierarchy rooted at this element to XML.
Definition: Screen.cpp:760
bool linkAnnotation(const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Link Annotation.
Definition: Screen.cpp:721
OMEModelObject::indexed_container< ome::xml::model::Plate, ome::compat::weak_ptr >::type getLinkedPlateList() const
Get the linked Plate list.
Definition: Screen.cpp:639
void setName(ome::compat::shared_ptr< std::string > &name)
Set the Name property.
Definition: Screen.cpp:428
bool link(ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)
Link a given OME model object to this model object.
Definition: Screen.cpp:367
void addReagent(ome::compat::shared_ptr< ome::xml::model::Reagent > &reagent)
Add Reagent.
Definition: Screen.cpp:614
Screen model object.
Definition: Screen.h:80
const std::string & getXMLNamespace() const
Get the XML namespace for this model object.
Definition: Screen.cpp:931
Multi-index container for efficient ordered insertion and deletion of model object references...
Definition: OMEModelObject.h:85
static ome::compat::shared_ptr< Screen > create(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Create a Screen model object from DOM element.
Definition: Screen.cpp:210
Open Microscopy Environment C++ implementation.
Definition: CoreMetadata.cpp:40
ome::compat::shared_ptr< std::string > getName()
Get the Name property.
Definition: Screen.cpp:414
bool unlinkAnnotation(const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Unlink Annotation.
Definition: Screen.cpp:735
OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type getLinkedAnnotationList() const
Get the linked Annotation list.
Definition: Screen.cpp:699
const ome::compat::weak_ptr< ome::xml::model::Annotation > & setLinkedAnnotation(OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Set linked Annotation.
Definition: Screen.cpp:711
std::vector< ome::compat::shared_ptr< ome::xml::model::Reagent > >::size_type sizeOfReagentList() const
Get size of linked Reagent list.
Definition: Screen.cpp:575
ome::compat::shared_ptr< std::string > getProtocolDescription()
Get the ProtocolDescription property.
Definition: Screen.cpp:435
void setReagent(std::vector< ome::compat::shared_ptr< ome::xml::model::Reagent > >::size_type index, ome::compat::shared_ptr< ome::xml::model::Reagent > &reagent)
Set Reagent.
Definition: Screen.cpp:605
virtual ~Screen()
Destructor.
Definition: Screen.cpp:205
void setReagentSetIdentifier(ome::compat::shared_ptr< std::string > &reagentSetIdentifier)
Set the ReagentSetIdentifier property.
Definition: Screen.cpp:547
void removeReagent(ome::compat::shared_ptr< ome::xml::model::Reagent > &reagent)
Remove Reagent.
Definition: Screen.cpp:622
void setProtocolDescription(ome::compat::shared_ptr< std::string > &protocolDescription)
Set the ProtocolDescription property.
Definition: Screen.cpp:449
bool linkPlate(const ome::compat::shared_ptr< ome::xml::model::Plate > &plate)
Link Plate.
Definition: Screen.cpp:661
ome::compat::shared_ptr< std::string > getReagentSetIdentifier()
Get the ReagentSetIdentifier property.
Definition: Screen.cpp:533
ome::compat::shared_ptr< std::string > getDescription()
Get the Description property.
Definition: Screen.cpp:554
void setProtocolIdentifier(ome::compat::shared_ptr< std::string > &protocolIdentifier)
Set the ProtocolIdentifier property.
Definition: Screen.cpp:470
Private implementation details of Screen model object.
Definition: Screen.cpp:76
void setType(ome::compat::shared_ptr< std::string > &type)
Set the Type property.
Definition: Screen.cpp:512
ome::compat::shared_ptr< std::string > getProtocolIdentifier()
Get the ProtocolIdentifier property.
Definition: Screen.cpp:456
bool unlinkPlate(const ome::compat::shared_ptr< ome::xml::model::Plate > &plate)
Unlink Plate.
Definition: Screen.cpp:675
virtual common::xml::dom::Element asXMLElement(common::xml::dom::Document &document) const
Transform the object hierarchy rooted at this element to XML.
Definition: Screen.cpp:753
OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type sizeOfLinkedAnnotationList() const
Get size of linked Annotation list.
Definition: Screen.cpp:693
const ome::compat::weak_ptr< ome::xml::model::Annotation > & getLinkedAnnotation(OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index) const
Get linked Annotation.
Definition: Screen.cpp:705
Boost.Log compatibility.
ome::compat::shared_ptr< Impl > impl
Private implementation details.
Definition: Screen.h:83
void setReagentSetDescription(ome::compat::shared_ptr< std::string > &reagentSetDescription)
Set the ReagentSetDescription property.
Definition: Screen.cpp:491
bool validElementName(const std::string &name) const
Check if a given element name is valid for processing by this model object.
Definition: Screen.cpp:226
Xerces-C modern C++ wrapper.
Definition: Base.h:53
OMEModelObject::indexed_container< ome::xml::model::Plate, ome::compat::weak_ptr >::type::size_type sizeOfLinkedPlateList() const
Get size of linked Plate list.
Definition: Screen.cpp:633
void setID(const std::string &id)
Set the ID property.
Definition: Screen.cpp:526