bioformats  5.1.8
OME.h
1 /*
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3  * OME-XML C++ library for working with OME-XML metadata structures.
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38 
39 /*─────────────────────────────────────────────────────────────────────────────
40  *
41  * THIS IS AUTOMATICALLY GENERATED CODE. DO NOT MODIFY.
42  *
43  *─────────────────────────────────────────────────────────────────────────────
44  */
45 
46 #ifndef OME_XML_MODEL_OME_H
47 #define OME_XML_MODEL_OME_H
48 
49 #include <algorithm>
50 #include <list>
51 #include <stdexcept>
52 #include <string>
53 #include <vector>
54 
55 #include <ome/common/log.h>
56 
57 #include <ome/common/xml/dom/Document.h>
58 #include <ome/common/xml/dom/Element.h>
59 #include <ome/common/xml/dom/Node.h>
60 #include <ome/common/xml/dom/NodeList.h>
61 
62 #include <ome/xml/model/BinaryOnly.h>
63 #include <ome/xml/model/Rights.h>
64 #include <ome/xml/model/StructuredAnnotations.h>
65 #include <ome/xml/model/detail/OMEModelObject.h>
66 
67 namespace ome
68 {
69  namespace xml
70  {
71  namespace model
72  {
73 
74  // Forward declarations.
75  class Dataset;
76  class Experiment;
77  class Experimenter;
78  class ExperimenterGroup;
79  class Image;
80  class Instrument;
81  class OMEModel;
82  class Plate;
83  class Project;
84  class ROI;
85  class Screen;
86 
90  class OME : public detail::OMEModelObject
91  {
92  private:
93  class Impl;
95  ome::compat::shared_ptr<Impl> impl;
96 
97  public:
99  OME();
100 
106  OME (const OME& copy);
107 
109  virtual
110  ~OME ();
111 
126  static ome::compat::shared_ptr< OME>
127  create(const common::xml::dom::Element& element,
129 
130  // Documented in superclass.
131  const std::string&
132  elementName() const;
133 
134  // Documented in superclass.
135  bool
136  validElementName(const std::string& name) const;
137 
138 
139  // -- OMEModelObject API methods --
140 
142  virtual void
143  update(const common::xml::dom::Element& element,
145 
146  public:
147  // -- OME API methods --
148 
150  bool
151  link (ome::compat::shared_ptr<Reference>& reference,
152  ome::compat::shared_ptr< ome::xml::model::OMEModelObject>& object);
153 
159  ome::compat::shared_ptr<std::string>
160  getUUID ();
161 
167  const ome::compat::shared_ptr<std::string>
168  getUUID () const;
169 
175  void
176  setUUID (ome::compat::shared_ptr<std::string>& uuid);
177 
183  ome::compat::shared_ptr<std::string>
184  getCreator ();
185 
191  const ome::compat::shared_ptr<std::string>
192  getCreator () const;
193 
199  void
200  setCreator (ome::compat::shared_ptr<std::string>& creator);
201 
207  ome::compat::shared_ptr<ome::xml::model::Rights>
208  getRights ();
209 
215  const ome::compat::shared_ptr<ome::xml::model::Rights>
216  getRights () const;
217 
223  void
224  setRights (ome::compat::shared_ptr<ome::xml::model::Rights>& rights);
225 
231  std::vector<ome::compat::shared_ptr<ome::xml::model::Project> >::size_type
232  sizeOfProjectList () const;
233 
240  std::vector<ome::compat::shared_ptr<ome::xml::model::Project> >&
241  getProjectList ();
242 
249  const std::vector<ome::compat::shared_ptr<ome::xml::model::Project> >&
250  getProjectList () const;
251 
259  ome::compat::shared_ptr<ome::xml::model::Project>&
260  getProject (std::vector<ome::compat::shared_ptr<ome::xml::model::Project> >::size_type index);
261 
269  const ome::compat::shared_ptr<ome::xml::model::Project>&
270  getProject (std::vector<ome::compat::shared_ptr<ome::xml::model::Project> >::size_type index) const;
271 
279  void
280  setProject (std::vector<ome::compat::shared_ptr<ome::xml::model::Project> >::size_type index,
281  ome::compat::shared_ptr<ome::xml::model::Project>& project);
282 
291  void
292  addProject (ome::compat::shared_ptr<ome::xml::model::Project>& project);
293 
303  void
304  removeProject (ome::compat::shared_ptr<ome::xml::model::Project>& project);
305 
311  std::vector<ome::compat::shared_ptr<ome::xml::model::Dataset> >::size_type
312  sizeOfDatasetList () const;
313 
320  std::vector<ome::compat::shared_ptr<ome::xml::model::Dataset> >&
321  getDatasetList ();
322 
329  const std::vector<ome::compat::shared_ptr<ome::xml::model::Dataset> >&
330  getDatasetList () const;
331 
339  ome::compat::shared_ptr<ome::xml::model::Dataset>&
340  getDataset (std::vector<ome::compat::shared_ptr<ome::xml::model::Dataset> >::size_type index);
341 
349  const ome::compat::shared_ptr<ome::xml::model::Dataset>&
350  getDataset (std::vector<ome::compat::shared_ptr<ome::xml::model::Dataset> >::size_type index) const;
351 
359  void
360  setDataset (std::vector<ome::compat::shared_ptr<ome::xml::model::Dataset> >::size_type index,
361  ome::compat::shared_ptr<ome::xml::model::Dataset>& dataset);
362 
371  void
372  addDataset (ome::compat::shared_ptr<ome::xml::model::Dataset>& dataset);
373 
383  void
384  removeDataset (ome::compat::shared_ptr<ome::xml::model::Dataset>& dataset);
385 
391  std::vector<ome::compat::shared_ptr<ome::xml::model::Experiment> >::size_type
392  sizeOfExperimentList () const;
393 
400  std::vector<ome::compat::shared_ptr<ome::xml::model::Experiment> >&
402 
409  const std::vector<ome::compat::shared_ptr<ome::xml::model::Experiment> >&
410  getExperimentList () const;
411 
419  ome::compat::shared_ptr<ome::xml::model::Experiment>&
420  getExperiment (std::vector<ome::compat::shared_ptr<ome::xml::model::Experiment> >::size_type index);
421 
429  const ome::compat::shared_ptr<ome::xml::model::Experiment>&
430  getExperiment (std::vector<ome::compat::shared_ptr<ome::xml::model::Experiment> >::size_type index) const;
431 
439  void
440  setExperiment (std::vector<ome::compat::shared_ptr<ome::xml::model::Experiment> >::size_type index,
441  ome::compat::shared_ptr<ome::xml::model::Experiment>& experiment);
442 
451  void
452  addExperiment (ome::compat::shared_ptr<ome::xml::model::Experiment>& experiment);
453 
463  void
464  removeExperiment (ome::compat::shared_ptr<ome::xml::model::Experiment>& experiment);
465 
471  std::vector<ome::compat::shared_ptr<ome::xml::model::Plate> >::size_type
472  sizeOfPlateList () const;
473 
480  std::vector<ome::compat::shared_ptr<ome::xml::model::Plate> >&
481  getPlateList ();
482 
489  const std::vector<ome::compat::shared_ptr<ome::xml::model::Plate> >&
490  getPlateList () const;
491 
499  ome::compat::shared_ptr<ome::xml::model::Plate>&
500  getPlate (std::vector<ome::compat::shared_ptr<ome::xml::model::Plate> >::size_type index);
501 
509  const ome::compat::shared_ptr<ome::xml::model::Plate>&
510  getPlate (std::vector<ome::compat::shared_ptr<ome::xml::model::Plate> >::size_type index) const;
511 
519  void
520  setPlate (std::vector<ome::compat::shared_ptr<ome::xml::model::Plate> >::size_type index,
521  ome::compat::shared_ptr<ome::xml::model::Plate>& plate);
522 
531  void
532  addPlate (ome::compat::shared_ptr<ome::xml::model::Plate>& plate);
533 
543  void
544  removePlate (ome::compat::shared_ptr<ome::xml::model::Plate>& plate);
545 
551  std::vector<ome::compat::shared_ptr<ome::xml::model::Screen> >::size_type
552  sizeOfScreenList () const;
553 
560  std::vector<ome::compat::shared_ptr<ome::xml::model::Screen> >&
561  getScreenList ();
562 
569  const std::vector<ome::compat::shared_ptr<ome::xml::model::Screen> >&
570  getScreenList () const;
571 
579  ome::compat::shared_ptr<ome::xml::model::Screen>&
580  getScreen (std::vector<ome::compat::shared_ptr<ome::xml::model::Screen> >::size_type index);
581 
589  const ome::compat::shared_ptr<ome::xml::model::Screen>&
590  getScreen (std::vector<ome::compat::shared_ptr<ome::xml::model::Screen> >::size_type index) const;
591 
599  void
600  setScreen (std::vector<ome::compat::shared_ptr<ome::xml::model::Screen> >::size_type index,
601  ome::compat::shared_ptr<ome::xml::model::Screen>& screen);
602 
611  void
612  addScreen (ome::compat::shared_ptr<ome::xml::model::Screen>& screen);
613 
623  void
624  removeScreen (ome::compat::shared_ptr<ome::xml::model::Screen>& screen);
625 
631  std::vector<ome::compat::shared_ptr<ome::xml::model::Experimenter> >::size_type
632  sizeOfExperimenterList () const;
633 
640  std::vector<ome::compat::shared_ptr<ome::xml::model::Experimenter> >&
642 
649  const std::vector<ome::compat::shared_ptr<ome::xml::model::Experimenter> >&
650  getExperimenterList () const;
651 
659  ome::compat::shared_ptr<ome::xml::model::Experimenter>&
660  getExperimenter (std::vector<ome::compat::shared_ptr<ome::xml::model::Experimenter> >::size_type index);
661 
669  const ome::compat::shared_ptr<ome::xml::model::Experimenter>&
670  getExperimenter (std::vector<ome::compat::shared_ptr<ome::xml::model::Experimenter> >::size_type index) const;
671 
679  void
680  setExperimenter (std::vector<ome::compat::shared_ptr<ome::xml::model::Experimenter> >::size_type index,
681  ome::compat::shared_ptr<ome::xml::model::Experimenter>& experimenter);
682 
691  void
692  addExperimenter (ome::compat::shared_ptr<ome::xml::model::Experimenter>& experimenter);
693 
703  void
704  removeExperimenter (ome::compat::shared_ptr<ome::xml::model::Experimenter>& experimenter);
705 
711  std::vector<ome::compat::shared_ptr<ome::xml::model::ExperimenterGroup> >::size_type
713 
720  std::vector<ome::compat::shared_ptr<ome::xml::model::ExperimenterGroup> >&
722 
729  const std::vector<ome::compat::shared_ptr<ome::xml::model::ExperimenterGroup> >&
730  getExperimenterGroupList () const;
731 
739  ome::compat::shared_ptr<ome::xml::model::ExperimenterGroup>&
740  getExperimenterGroup (std::vector<ome::compat::shared_ptr<ome::xml::model::ExperimenterGroup> >::size_type index);
741 
749  const ome::compat::shared_ptr<ome::xml::model::ExperimenterGroup>&
750  getExperimenterGroup (std::vector<ome::compat::shared_ptr<ome::xml::model::ExperimenterGroup> >::size_type index) const;
751 
759  void
760  setExperimenterGroup (std::vector<ome::compat::shared_ptr<ome::xml::model::ExperimenterGroup> >::size_type index,
761  ome::compat::shared_ptr<ome::xml::model::ExperimenterGroup>& experimenterGroup);
762 
771  void
772  addExperimenterGroup (ome::compat::shared_ptr<ome::xml::model::ExperimenterGroup>& experimenterGroup);
773 
783  void
784  removeExperimenterGroup (ome::compat::shared_ptr<ome::xml::model::ExperimenterGroup>& experimenterGroup);
785 
791  std::vector<ome::compat::shared_ptr<ome::xml::model::Instrument> >::size_type
792  sizeOfInstrumentList () const;
793 
800  std::vector<ome::compat::shared_ptr<ome::xml::model::Instrument> >&
802 
809  const std::vector<ome::compat::shared_ptr<ome::xml::model::Instrument> >&
810  getInstrumentList () const;
811 
819  ome::compat::shared_ptr<ome::xml::model::Instrument>&
820  getInstrument (std::vector<ome::compat::shared_ptr<ome::xml::model::Instrument> >::size_type index);
821 
829  const ome::compat::shared_ptr<ome::xml::model::Instrument>&
830  getInstrument (std::vector<ome::compat::shared_ptr<ome::xml::model::Instrument> >::size_type index) const;
831 
839  void
840  setInstrument (std::vector<ome::compat::shared_ptr<ome::xml::model::Instrument> >::size_type index,
841  ome::compat::shared_ptr<ome::xml::model::Instrument>& instrument);
842 
851  void
852  addInstrument (ome::compat::shared_ptr<ome::xml::model::Instrument>& instrument);
853 
863  void
864  removeInstrument (ome::compat::shared_ptr<ome::xml::model::Instrument>& instrument);
865 
871  std::vector<ome::compat::shared_ptr<ome::xml::model::Image> >::size_type
872  sizeOfImageList () const;
873 
880  std::vector<ome::compat::shared_ptr<ome::xml::model::Image> >&
881  getImageList ();
882 
889  const std::vector<ome::compat::shared_ptr<ome::xml::model::Image> >&
890  getImageList () const;
891 
899  ome::compat::shared_ptr<ome::xml::model::Image>&
900  getImage (std::vector<ome::compat::shared_ptr<ome::xml::model::Image> >::size_type index);
901 
909  const ome::compat::shared_ptr<ome::xml::model::Image>&
910  getImage (std::vector<ome::compat::shared_ptr<ome::xml::model::Image> >::size_type index) const;
911 
919  void
920  setImage (std::vector<ome::compat::shared_ptr<ome::xml::model::Image> >::size_type index,
921  ome::compat::shared_ptr<ome::xml::model::Image>& image);
922 
931  void
932  addImage (ome::compat::shared_ptr<ome::xml::model::Image>& image);
933 
943  void
944  removeImage (ome::compat::shared_ptr<ome::xml::model::Image>& image);
945 
951  ome::compat::shared_ptr<ome::xml::model::StructuredAnnotations>
953 
959  const ome::compat::shared_ptr<ome::xml::model::StructuredAnnotations>
960  getStructuredAnnotations () const;
961 
967  void
968  setStructuredAnnotations (ome::compat::shared_ptr<ome::xml::model::StructuredAnnotations>& structuredAnnotations);
969 
975  std::vector<ome::compat::shared_ptr<ome::xml::model::ROI> >::size_type
976  sizeOfROIList () const;
977 
984  std::vector<ome::compat::shared_ptr<ome::xml::model::ROI> >&
985  getROIList ();
986 
993  const std::vector<ome::compat::shared_ptr<ome::xml::model::ROI> >&
994  getROIList () const;
995 
1003  ome::compat::shared_ptr<ome::xml::model::ROI>&
1004  getROI (std::vector<ome::compat::shared_ptr<ome::xml::model::ROI> >::size_type index);
1005 
1013  const ome::compat::shared_ptr<ome::xml::model::ROI>&
1014  getROI (std::vector<ome::compat::shared_ptr<ome::xml::model::ROI> >::size_type index) const;
1015 
1023  void
1024  setROI (std::vector<ome::compat::shared_ptr<ome::xml::model::ROI> >::size_type index,
1025  ome::compat::shared_ptr<ome::xml::model::ROI>& roi);
1026 
1035  void
1036  addROI (ome::compat::shared_ptr<ome::xml::model::ROI>& roi);
1037 
1047  void
1048  removeROI (ome::compat::shared_ptr<ome::xml::model::ROI>& roi);
1049 
1055  ome::compat::shared_ptr<ome::xml::model::BinaryOnly>
1056  getBinaryOnly ();
1057 
1063  const ome::compat::shared_ptr<ome::xml::model::BinaryOnly>
1064  getBinaryOnly () const;
1065 
1071  void
1072  setBinaryOnly (ome::compat::shared_ptr<ome::xml::model::BinaryOnly>& binaryOnly);
1073 
1074 
1077  asXMLElement (common::xml::dom::Document& document) const;
1078 
1079 
1080  protected:
1081  // Documented in base class.
1084  common::xml::dom::Element& element) const;
1085 
1086  public:
1087  // Documented in superclass.
1088  const std::string&
1089  getXMLNamespace() const;
1090  };
1091 
1092  }
1093  }
1094 }
1095 
1096 #endif // OME_XML_MODEL_OME_H
1097 
1098 /*
1099  * Local Variables:
1100  * mode:C++
1101  * End:
1102  */
OME model interface (abstract top-level container)
Definition: OMEModel.h:62
ome::compat::shared_ptr< ome::xml::model::Instrument > & getInstrument(std::vector< ome::compat::shared_ptr< ome::xml::model::Instrument > >::size_type index)
Get Instrument.
Definition: OME.cpp:1042
void setProject(std::vector< ome::compat::shared_ptr< ome::xml::model::Project > >::size_type index, ome::compat::shared_ptr< ome::xml::model::Project > &project)
Set Project.
Definition: OME.cpp:676
void addDataset(ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset)
Add Dataset.
Definition: OME.cpp:737
void setExperimenterGroup(std::vector< ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > >::size_type index, ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup)
Set ExperimenterGroup.
Definition: OME.cpp:1000
std::vector< ome::compat::shared_ptr< ome::xml::model::Instrument > >::size_type sizeOfInstrumentList() const
Get size of linked Instrument list.
Definition: OME.cpp:1024
ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > & getExperimenterGroup(std::vector< ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > >::size_type index)
Get ExperimenterGroup.
Definition: OME.cpp:988
void setBinaryOnly(ome::compat::shared_ptr< ome::xml::model::BinaryOnly > &binaryOnly)
Set the BinaryOnly property.
Definition: OME.cpp:1221
std::vector< ome::compat::shared_ptr< ome::xml::model::Project > >::size_type sizeOfProjectList() const
Get size of linked Project list.
Definition: OME.cpp:646
ome::compat::shared_ptr< ome::xml::model::Rights > getRights()
Get the Rights property.
Definition: OME.cpp:625
std::vector< ome::compat::shared_ptr< ome::xml::model::Experiment > > & getExperimentList()
Get the Experiment list.
Definition: OME.cpp:760
Private implementation details of OME model object.
Definition: OME.cpp:182
void removeProject(ome::compat::shared_ptr< ome::xml::model::Project > &project)
Remove Project.
Definition: OME.cpp:689
ome::compat::shared_ptr< std::string > getUUID()
Get the UUID property.
Definition: OME.cpp:583
OME model object.
Definition: OME.h:90
ome::compat::shared_ptr< ome::xml::model::Experiment > & getExperiment(std::vector< ome::compat::shared_ptr< ome::xml::model::Experiment > >::size_type index)
Get Experiment.
Definition: OME.cpp:772
void removeExperiment(ome::compat::shared_ptr< ome::xml::model::Experiment > &experiment)
Remove Experiment.
Definition: OME.cpp:797
void setInstrument(std::vector< ome::compat::shared_ptr< ome::xml::model::Instrument > >::size_type index, ome::compat::shared_ptr< ome::xml::model::Instrument > &instrument)
Set Instrument.
Definition: OME.cpp:1054
DOM Document wrapper.
Definition: Document.h:83
DOM Element wrapper.
Definition: Element.h:66
OME model object (concrete implementation).
Definition: OMEModelObject.h:64
ome::compat::shared_ptr< ome::xml::model::Experimenter > & getExperimenter(std::vector< ome::compat::shared_ptr< ome::xml::model::Experimenter > >::size_type index)
Get Experimenter.
Definition: OME.cpp:934
void addROI(ome::compat::shared_ptr< ome::xml::model::ROI > &roi)
Add ROI.
Definition: OME.cpp:1190
std::vector< ome::compat::shared_ptr< ome::xml::model::Project > > & getProjectList()
Get the Project list.
Definition: OME.cpp:652
std::vector< ome::compat::shared_ptr< ome::xml::model::Screen > >::size_type sizeOfScreenList() const
Get size of linked Screen list.
Definition: OME.cpp:862
void removePlate(ome::compat::shared_ptr< ome::xml::model::Plate > &plate)
Remove Plate.
Definition: OME.cpp:851
std::vector< ome::compat::shared_ptr< ome::xml::model::Instrument > > & getInstrumentList()
Get the Instrument list.
Definition: OME.cpp:1030
virtual ~OME()
Destructor.
Definition: OME.cpp:339
std::vector< ome::compat::shared_ptr< ome::xml::model::ROI > >::size_type sizeOfROIList() const
Get size of linked ROI list.
Definition: OME.cpp:1153
bool link(ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)
Link a given OME model object to this model object.
Definition: OME.cpp:568
void setExperimenter(std::vector< ome::compat::shared_ptr< ome::xml::model::Experimenter > >::size_type index, ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter)
Set Experimenter.
Definition: OME.cpp:946
void addProject(ome::compat::shared_ptr< ome::xml::model::Project > &project)
Add Project.
Definition: OME.cpp:683
OME()
Default constructor.
Definition: OME.cpp:320
void setDataset(std::vector< ome::compat::shared_ptr< ome::xml::model::Dataset > >::size_type index, ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset)
Set Dataset.
Definition: OME.cpp:730
void addExperimenterGroup(ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup)
Add ExperimenterGroup.
Definition: OME.cpp:1007
Open Microscopy Environment C++ implementation.
Definition: CoreMetadata.cpp:40
std::vector< ome::compat::shared_ptr< ome::xml::model::Experimenter > >::size_type sizeOfExperimenterList() const
Get size of linked Experimenter list.
Definition: OME.cpp:916
std::vector< ome::compat::shared_ptr< ome::xml::model::Screen > > & getScreenList()
Get the Screen list.
Definition: OME.cpp:868
void removeScreen(ome::compat::shared_ptr< ome::xml::model::Screen > &screen)
Remove Screen.
Definition: OME.cpp:905
ome::compat::shared_ptr< Impl > impl
Private implementation details.
Definition: OME.h:93
std::vector< ome::compat::shared_ptr< ome::xml::model::Plate > >::size_type sizeOfPlateList() const
Get size of linked Plate list.
Definition: OME.cpp:808
std::vector< ome::compat::shared_ptr< ome::xml::model::Dataset > >::size_type sizeOfDatasetList() const
Get size of linked Dataset list.
Definition: OME.cpp:700
void addScreen(ome::compat::shared_ptr< ome::xml::model::Screen > &screen)
Add Screen.
Definition: OME.cpp:899
ome::compat::shared_ptr< ome::xml::model::BinaryOnly > getBinaryOnly()
Get the BinaryOnly property.
Definition: OME.cpp:1207
ome::compat::shared_ptr< ome::xml::model::Plate > & getPlate(std::vector< ome::compat::shared_ptr< ome::xml::model::Plate > >::size_type index)
Get Plate.
Definition: OME.cpp:826
virtual void update(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Update the object hierarchy recursively from an XML DOM tree.
Definition: OME.cpp:369
std::vector< ome::compat::shared_ptr< ome::xml::model::Plate > > & getPlateList()
Get the Plate list.
Definition: OME.cpp:814
void setROI(std::vector< ome::compat::shared_ptr< ome::xml::model::ROI > >::size_type index, ome::compat::shared_ptr< ome::xml::model::ROI > &roi)
Set ROI.
Definition: OME.cpp:1183
void addExperiment(ome::compat::shared_ptr< ome::xml::model::Experiment > &experiment)
Add Experiment.
Definition: OME.cpp:791
ome::compat::shared_ptr< ome::xml::model::Dataset > & getDataset(std::vector< ome::compat::shared_ptr< ome::xml::model::Dataset > >::size_type index)
Get Dataset.
Definition: OME.cpp:718
void removeDataset(ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset)
Remove Dataset.
Definition: OME.cpp:743
ome::compat::shared_ptr< std::string > getCreator()
Get the Creator property.
Definition: OME.cpp:604
void setScreen(std::vector< ome::compat::shared_ptr< ome::xml::model::Screen > >::size_type index, ome::compat::shared_ptr< ome::xml::model::Screen > &screen)
Set Screen.
Definition: OME.cpp:892
void addImage(ome::compat::shared_ptr< ome::xml::model::Image > &image)
Add Image.
Definition: OME.cpp:1115
void setCreator(ome::compat::shared_ptr< std::string > &creator)
Set the Creator property.
Definition: OME.cpp:618
void setUUID(ome::compat::shared_ptr< std::string > &uuid)
Set the UUID property.
Definition: OME.cpp:597
std::vector< ome::compat::shared_ptr< ome::xml::model::Dataset > > & getDatasetList()
Get the Dataset list.
Definition: OME.cpp:706
std::vector< ome::compat::shared_ptr< ome::xml::model::Experiment > >::size_type sizeOfExperimentList() const
Get size of linked Experiment list.
Definition: OME.cpp:754
void setExperiment(std::vector< ome::compat::shared_ptr< ome::xml::model::Experiment > >::size_type index, ome::compat::shared_ptr< ome::xml::model::Experiment > &experiment)
Set Experiment.
Definition: OME.cpp:784
void addInstrument(ome::compat::shared_ptr< ome::xml::model::Instrument > &instrument)
Add Instrument.
Definition: OME.cpp:1061
std::vector< ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > >::size_type sizeOfExperimenterGroupList() const
Get size of linked ExperimenterGroup list.
Definition: OME.cpp:970
bool validElementName(const std::string &name) const
Check if a given element name is valid for processing by this model object.
Definition: OME.cpp:360
void setRights(ome::compat::shared_ptr< ome::xml::model::Rights > &rights)
Set the Rights property.
Definition: OME.cpp:639
ome::compat::shared_ptr< ome::xml::model::Project > & getProject(std::vector< ome::compat::shared_ptr< ome::xml::model::Project > >::size_type index)
Get Project.
Definition: OME.cpp:664
std::vector< ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > > & getExperimenterGroupList()
Get the ExperimenterGroup list.
Definition: OME.cpp:976
std::vector< ome::compat::shared_ptr< ome::xml::model::Image > > & getImageList()
Get the Image list.
Definition: OME.cpp:1084
void setStructuredAnnotations(ome::compat::shared_ptr< ome::xml::model::StructuredAnnotations > &structuredAnnotations)
Set the StructuredAnnotations property.
Definition: OME.cpp:1146
const std::string & elementName() const
Get the element name of this model object.
Definition: OME.cpp:353
ome::compat::shared_ptr< ome::xml::model::Image > & getImage(std::vector< ome::compat::shared_ptr< ome::xml::model::Image > >::size_type index)
Get Image.
Definition: OME.cpp:1096
ome::compat::shared_ptr< ome::xml::model::Screen > & getScreen(std::vector< ome::compat::shared_ptr< ome::xml::model::Screen > >::size_type index)
Get Screen.
Definition: OME.cpp:880
virtual common::xml::dom::Element asXMLElement(common::xml::dom::Document &document) const
Transform the object hierarchy rooted at this element to XML.
Definition: OME.cpp:1228
void removeExperimenterGroup(ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup)
Remove ExperimenterGroup.
Definition: OME.cpp:1013
std::vector< ome::compat::shared_ptr< ome::xml::model::Image > >::size_type sizeOfImageList() const
Get size of linked Image list.
Definition: OME.cpp:1078
void addPlate(ome::compat::shared_ptr< ome::xml::model::Plate > &plate)
Add Plate.
Definition: OME.cpp:845
void setImage(std::vector< ome::compat::shared_ptr< ome::xml::model::Image > >::size_type index, ome::compat::shared_ptr< ome::xml::model::Image > &image)
Set Image.
Definition: OME.cpp:1108
std::vector< ome::compat::shared_ptr< ome::xml::model::Experimenter > > & getExperimenterList()
Get the Experimenter list.
Definition: OME.cpp:922
virtual common::xml::dom::Element asXMLElementInternal(common::xml::dom::Document &document, common::xml::dom::Element &element) const
Transform the object hierarchy rooted at this element to XML.
Definition: OME.cpp:1235
ome::compat::shared_ptr< ome::xml::model::StructuredAnnotations > getStructuredAnnotations()
Get the StructuredAnnotations property.
Definition: OME.cpp:1132
void removeExperimenter(ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter)
Remove Experimenter.
Definition: OME.cpp:959
Boost.Log compatibility.
void removeInstrument(ome::compat::shared_ptr< ome::xml::model::Instrument > &instrument)
Remove Instrument.
Definition: OME.cpp:1067
std::vector< ome::compat::shared_ptr< ome::xml::model::ROI > > & getROIList()
Get the ROI list.
Definition: OME.cpp:1159
ome::compat::shared_ptr< ome::xml::model::ROI > & getROI(std::vector< ome::compat::shared_ptr< ome::xml::model::ROI > >::size_type index)
Get ROI.
Definition: OME.cpp:1171
void setPlate(std::vector< ome::compat::shared_ptr< ome::xml::model::Plate > >::size_type index, ome::compat::shared_ptr< ome::xml::model::Plate > &plate)
Set Plate.
Definition: OME.cpp:838
static ome::compat::shared_ptr< OME > create(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Create a OME model object from DOM element.
Definition: OME.cpp:344
void removeImage(ome::compat::shared_ptr< ome::xml::model::Image > &image)
Remove Image.
Definition: OME.cpp:1121
const std::string & getXMLNamespace() const
Get the XML namespace for this model object.
Definition: OME.cpp:1464
void removeROI(ome::compat::shared_ptr< ome::xml::model::ROI > &roi)
Remove ROI.
Definition: OME.cpp:1196
Xerces-C modern C++ wrapper.
Definition: Base.h:53
void addExperimenter(ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter)
Add Experimenter.
Definition: OME.cpp:953