bioformats  5.1.6
Well.h
1 /*
2  * #%L
3  * OME-XML C++ library for working with OME-XML metadata structures.
4  * %%
5  * Copyright © 2006 - 2015 Open Microscopy Environment:
6  * - Massachusetts Institute of Technology
7  * - National Institutes of Health
8  * - University of Dundee
9  * - Board of Regents of the University of Wisconsin-Madison
10  * - Glencoe Software, Inc.
11  * %%
12  * Redistribution and use in source and binary forms, with or without
13  * modification, are permitted provided that the following conditions are met:
14  *
15  * 1. Redistributions of source code must retain the above copyright notice,
16  * this list of conditions and the following disclaimer.
17  * 2. Redistributions in binary form must reproduce the above copyright notice,
18  * this list of conditions and the following disclaimer in the documentation
19  * and/or other materials provided with the distribution.
20  *
21  * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
22  * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
23  * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
24  * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
25  * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
26  * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
27  * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
28  * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
29  * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
30  * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
31  * POSSIBILITY OF SUCH DAMAGE.
32  *
33  * The views and conclusions contained in the software and documentation are
34  * those of the authors and should not be interpreted as representing official
35  * policies, either expressed or implied, of any organization.
36  * #L%
37  */
38 
39 /*─────────────────────────────────────────────────────────────────────────────
40  *
41  * THIS IS AUTOMATICALLY GENERATED CODE. DO NOT MODIFY.
42  *
43  *─────────────────────────────────────────────────────────────────────────────
44  */
45 
46 #ifndef OME_XML_MODEL_WELL_H
47 #define OME_XML_MODEL_WELL_H
48 
49 #include <algorithm>
50 #include <list>
51 #include <stdexcept>
52 #include <string>
53 #include <vector>
54 
55 #include <ome/common/log.h>
56 
57 #include <ome/common/xml/dom/Document.h>
58 #include <ome/common/xml/dom/Element.h>
59 #include <ome/common/xml/dom/Node.h>
60 #include <ome/common/xml/dom/NodeList.h>
61 
62 #include <ome/xml/model/Plate.h>
63 #include <ome/xml/model/Reagent.h>
64 #include <ome/xml/model/detail/OMEModelObject.h>
65 #include <ome/xml/model/primitives/Color.h>
66 #include <ome/xml/model/primitives/NonNegativeInteger.h>
67 
68 namespace ome
69 {
70  namespace xml
71  {
72  namespace model
73  {
74 
75  // Forward declarations.
76  class Annotation;
77  class OMEModel;
78  class WellSample;
79 
84  {
85  private:
86  class Impl;
88  ome::compat::shared_ptr<Impl> impl;
89 
90  public:
92  Well();
93 
99  Well (const Well& copy);
100 
102  virtual
103  ~Well ();
104 
119  static ome::compat::shared_ptr< Well>
120  create(const common::xml::dom::Element& element,
122 
123  // Documented in superclass.
124  const std::string&
125  elementName() const;
126 
127  // Documented in superclass.
128  bool
129  validElementName(const std::string& name) const;
130 
131 
132  // -- OMEModelObject API methods --
133 
135  virtual void
136  update(const common::xml::dom::Element& element,
138 
139  public:
140  // -- Well API methods --
141 
143  bool
144  link (ome::compat::shared_ptr<Reference>& reference,
145  ome::compat::shared_ptr< ome::xml::model::OMEModelObject>& object);
146 
152  ome::compat::shared_ptr<std::string>
154 
160  const ome::compat::shared_ptr<std::string>
161  getExternalIdentifier () const;
162 
168  void
169  setExternalIdentifier (ome::compat::shared_ptr<std::string>& externalIdentifier);
170 
177  getColumn () const;
178 
184  void
186 
192  ome::compat::shared_ptr<std::string>
194 
200  const ome::compat::shared_ptr<std::string>
201  getExternalDescription () const;
202 
208  void
209  setExternalDescription (ome::compat::shared_ptr<std::string>& externalDescription);
210 
216  ome::compat::shared_ptr<ome::xml::model::primitives::Color>
217  getColor ();
218 
224  const ome::compat::shared_ptr<ome::xml::model::primitives::Color>
225  getColor () const;
226 
232  void
233  setColor (ome::compat::shared_ptr<ome::xml::model::primitives::Color>& color);
234 
240  ome::compat::shared_ptr<std::string>
241  getType ();
242 
248  const ome::compat::shared_ptr<std::string>
249  getType () const;
250 
256  void
257  setType (ome::compat::shared_ptr<std::string>& type);
258 
264  const std::string&
265  getID () const;
266 
272  void
273  setID (const std::string& id);
274 
281  getRow () const;
282 
288  void
290 
296  std::vector<ome::compat::shared_ptr<ome::xml::model::WellSample> >::size_type
297  sizeOfWellSampleList () const;
298 
305  std::vector<ome::compat::shared_ptr<ome::xml::model::WellSample> >&
307 
314  const std::vector<ome::compat::shared_ptr<ome::xml::model::WellSample> >&
315  getWellSampleList () const;
316 
324  ome::compat::shared_ptr<ome::xml::model::WellSample>&
325  getWellSample (std::vector<ome::compat::shared_ptr<ome::xml::model::WellSample> >::size_type index);
326 
334  const ome::compat::shared_ptr<ome::xml::model::WellSample>&
335  getWellSample (std::vector<ome::compat::shared_ptr<ome::xml::model::WellSample> >::size_type index) const;
336 
344  void
345  setWellSample (std::vector<ome::compat::shared_ptr<ome::xml::model::WellSample> >::size_type index,
346  ome::compat::shared_ptr<ome::xml::model::WellSample>& wellSample);
347 
356  void
357  addWellSample (ome::compat::shared_ptr<ome::xml::model::WellSample>& wellSample);
358 
368  void
369  removeWellSample (ome::compat::shared_ptr<ome::xml::model::WellSample>& wellSample);
370 
377  ome::compat::weak_ptr<ome::xml::model::Reagent>
378  getLinkedReagent ();
379 
386  const ome::compat::weak_ptr<ome::xml::model::Reagent>
387  getLinkedReagent () const;
388 
394  void
395  linkReagent (ome::compat::shared_ptr<ome::xml::model::Reagent>& reagent);
396 
406  void
407  unlinkReagent (ome::compat::shared_ptr<ome::xml::model::Reagent>& reagent);
408 
416 
423  getLinkedAnnotationList () const;
424 
432  const ome::compat::weak_ptr<ome::xml::model::Annotation>&
434 
445  const ome::compat::weak_ptr<ome::xml::model::Annotation>&
447  const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
448 
459  bool
460  linkAnnotation (const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
461 
477  bool
478  unlinkAnnotation (const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
479 
485  ome::compat::weak_ptr<ome::xml::model::Plate>
486  getPlate ();
487 
493  const ome::compat::weak_ptr<ome::xml::model::Plate>
494  getPlate () const;
495 
501  void
502  setPlate (ome::compat::weak_ptr<ome::xml::model::Plate>& plate_BackReference);
503 
504 
507  asXMLElement (common::xml::dom::Document& document) const;
508 
509 
510  protected:
511  // Documented in base class.
514  common::xml::dom::Element& element) const;
515 
516  public:
517  // Documented in superclass.
518  const std::string&
519  getXMLNamespace() const;
520  };
521 
522  }
523  }
524 }
525 
526 #endif // OME_XML_MODEL_WELL_H
527 
528 /*
529  * Local Variables:
530  * mode:C++
531  * End:
532  */
OME model interface (abstract top-level container)
Definition: OMEModel.h:62
void setExternalDescription(ome::compat::shared_ptr< std::string > &externalDescription)
Set the ExternalDescription property.
Definition: Well.cpp:446
std::vector< ome::compat::shared_ptr< ome::xml::model::WellSample > > & getWellSampleList()
Get the WellSample list.
Definition: Well.cpp:529
ome::compat::shared_ptr< std::string > getExternalIdentifier()
Get the ExternalIdentifier property.
Definition: Well.cpp:397
const ome::compat::weak_ptr< ome::xml::model::Annotation > & setLinkedAnnotation(OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Set linked Annotation.
Definition: Well.cpp:628
const std::string & elementName() const
Get the element name of this model object.
Definition: Well.cpp:222
ome::compat::weak_ptr< ome::xml::model::Reagent > getLinkedReagent()
Get linked Reagent.
Definition: Well.cpp:581
OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type sizeOfLinkedAnnotationList() const
Get size of linked Annotation list.
Definition: Well.cpp:610
DOM Document wrapper.
Definition: Document.h:83
ome::compat::shared_ptr< ome::xml::model::WellSample > & getWellSample(std::vector< ome::compat::shared_ptr< ome::xml::model::WellSample > >::size_type index)
Get WellSample.
Definition: Well.cpp:541
DOM Element wrapper.
Definition: Element.h:66
OME model object (concrete implementation).
Definition: OMEModelObject.h:64
ome::compat::shared_ptr< ome::xml::model::primitives::Color > getColor()
Get the Color property.
Definition: Well.cpp:453
void setRow(const ome::xml::model::primitives::NonNegativeInteger &row)
Set the Row property.
Definition: Well.cpp:516
boost::multi_index_container< Ptr< T >, boost::multi_index::indexed_by< boost::multi_index::random_access<>, boost::multi_index::ordered_unique< boost::multi_index::identity< Ptr< T > >, ome::compat::owner_less< Ptr< T > > > > > type
Multi-index container type.
Definition: OMEModelObject.h:94
const std::string & getID() const
Get the ID property.
Definition: Well.cpp:495
void setWellSample(std::vector< ome::compat::shared_ptr< ome::xml::model::WellSample > >::size_type index, ome::compat::shared_ptr< ome::xml::model::WellSample > &wellSample)
Set WellSample.
Definition: Well.cpp:553
Well model object.
Definition: Well.h:83
static ome::compat::shared_ptr< Well > create(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Create a Well model object from DOM element.
Definition: Well.cpp:213
virtual ~Well()
Destructor.
Definition: Well.cpp:208
const ome::xml::model::primitives::NonNegativeInteger & getRow() const
Get the Row property.
Definition: Well.cpp:509
void setType(ome::compat::shared_ptr< std::string > &type)
Set the Type property.
Definition: Well.cpp:488
bool link(ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)
Link a given OME model object to this model object.
Definition: Well.cpp:355
Multi-index container for efficient ordered insertion and deletion of model object references...
Definition: OMEModelObject.h:85
ome::compat::shared_ptr< Impl > impl
Private implementation details.
Definition: Well.h:86
bool linkAnnotation(const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Link Annotation.
Definition: Well.cpp:638
Open Microscopy Environment C++ implementation.
Definition: CoreMetadata.cpp:40
bool unlinkAnnotation(const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Unlink Annotation.
Definition: Well.cpp:652
void addWellSample(ome::compat::shared_ptr< ome::xml::model::WellSample > &wellSample)
Add WellSample.
Definition: Well.cpp:562
void setID(const std::string &id)
Set the ID property.
Definition: Well.cpp:502
void setExternalIdentifier(ome::compat::shared_ptr< std::string > &externalIdentifier)
Set the ExternalIdentifier property.
Definition: Well.cpp:411
ome::compat::shared_ptr< std::string > getExternalDescription()
Get the ExternalDescription property.
Definition: Well.cpp:432
virtual common::xml::dom::Element asXMLElement(common::xml::dom::Document &document) const
Transform the object hierarchy rooted at this element to XML.
Definition: Well.cpp:691
void unlinkReagent(ome::compat::shared_ptr< ome::xml::model::Reagent > &reagent)
Unlink Reagent.
Definition: Well.cpp:600
virtual common::xml::dom::Element asXMLElementInternal(common::xml::dom::Document &document, common::xml::dom::Element &element) const
Transform the object hierarchy rooted at this element to XML.
Definition: Well.cpp:698
void setColumn(const ome::xml::model::primitives::NonNegativeInteger &column)
Set the Column property.
Definition: Well.cpp:425
bool validElementName(const std::string &name) const
Check if a given element name is valid for processing by this model object.
Definition: Well.cpp:229
ome::compat::weak_ptr< ome::xml::model::Plate > getPlate()
Get the Plate property.
Definition: Well.cpp:670
void removeWellSample(ome::compat::shared_ptr< ome::xml::model::WellSample > &wellSample)
Remove WellSample.
Definition: Well.cpp:570
const ome::xml::model::primitives::NonNegativeInteger & getColumn() const
Get the Column property.
Definition: Well.cpp:418
void linkReagent(ome::compat::shared_ptr< ome::xml::model::Reagent > &reagent)
Link Reagent.
Definition: Well.cpp:594
Private implementation details of Well model object.
Definition: Well.cpp:79
OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type getLinkedAnnotationList() const
Get the linked Annotation list.
Definition: Well.cpp:616
const std::string & getXMLNamespace() const
Get the XML namespace for this model object.
Definition: Well.cpp:844
Boost.Log compatibility.
ome::compat::shared_ptr< std::string > getType()
Get the Type property.
Definition: Well.cpp:474
std::vector< ome::compat::shared_ptr< ome::xml::model::WellSample > >::size_type sizeOfWellSampleList() const
Get size of linked WellSample list.
Definition: Well.cpp:523
const ome::compat::weak_ptr< ome::xml::model::Annotation > & getLinkedAnnotation(OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index) const
Get linked Annotation.
Definition: Well.cpp:622
void setColor(ome::compat::shared_ptr< ome::xml::model::primitives::Color > &color)
Set the Color property.
Definition: Well.cpp:467
virtual void update(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Update the object hierarchy recursively from an XML DOM tree.
Definition: Well.cpp:238
Well()
Default constructor.
Definition: Well.cpp:189
void setPlate(ome::compat::weak_ptr< ome::xml::model::Plate > &plate_BackReference)
Set the Plate property.
Definition: Well.cpp:684
A numeric type constrained to a subrange (or subranges) of its range limits.
Definition: ConstrainedNumeric.h:119
Xerces-C modern C++ wrapper.
Definition: Base.h:53