46 #ifndef OME_XML_MODEL_WELL_H
47 #define OME_XML_MODEL_WELL_H
57 #include <ome/common/xml/dom/Document.h>
58 #include <ome/common/xml/dom/Element.h>
59 #include <ome/common/xml/dom/Node.h>
60 #include <ome/common/xml/dom/NodeList.h>
62 #include <ome/xml/model/Plate.h>
63 #include <ome/xml/model/Reagent.h>
64 #include <ome/xml/model/detail/OMEModelObject.h>
65 #include <ome/xml/model/primitives/Color.h>
66 #include <ome/xml/model/primitives/NonNegativeInteger.h>
88 ome::compat::shared_ptr<Impl>
impl;
119 static ome::compat::shared_ptr< Well>
144 link (ome::compat::shared_ptr<Reference>& reference,
145 ome::compat::shared_ptr< ome::xml::model::OMEModelObject>&
object);
152 ome::compat::shared_ptr<std::string>
160 const ome::compat::shared_ptr<std::string>
192 ome::compat::shared_ptr<std::string>
200 const ome::compat::shared_ptr<std::string>
216 ome::compat::shared_ptr<ome::xml::model::primitives::Color>
224 const ome::compat::shared_ptr<ome::xml::model::primitives::Color>
233 setColor (ome::compat::shared_ptr<ome::xml::model::primitives::Color>& color);
240 ome::compat::shared_ptr<std::string>
248 const ome::compat::shared_ptr<std::string>
257 setType (ome::compat::shared_ptr<std::string>& type);
273 setID (
const std::string&
id);
296 std::vector<ome::compat::shared_ptr<ome::xml::model::WellSample> >::size_type
305 std::vector<ome::compat::shared_ptr<ome::xml::model::WellSample> >&
314 const std::vector<ome::compat::shared_ptr<ome::xml::model::WellSample> >&
324 ome::compat::shared_ptr<ome::xml::model::WellSample>&
325 getWellSample (std::vector<ome::compat::shared_ptr<ome::xml::model::WellSample> >::size_type index);
334 const ome::compat::shared_ptr<ome::xml::model::WellSample>&
335 getWellSample (std::vector<ome::compat::shared_ptr<ome::xml::model::WellSample> >::size_type index)
const;
345 setWellSample (std::vector<ome::compat::shared_ptr<ome::xml::model::WellSample> >::size_type index,
346 ome::compat::shared_ptr<ome::xml::model::WellSample>& wellSample);
357 addWellSample (ome::compat::shared_ptr<ome::xml::model::WellSample>& wellSample);
369 removeWellSample (ome::compat::shared_ptr<ome::xml::model::WellSample>& wellSample);
377 ome::compat::weak_ptr<ome::xml::model::Reagent>
386 const ome::compat::weak_ptr<ome::xml::model::Reagent>
395 linkReagent (ome::compat::shared_ptr<ome::xml::model::Reagent>& reagent);
407 unlinkReagent (ome::compat::shared_ptr<ome::xml::model::Reagent>& reagent);
432 const ome::compat::weak_ptr<ome::xml::model::Annotation>&
445 const ome::compat::weak_ptr<ome::xml::model::Annotation>&
447 const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
460 linkAnnotation (
const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
478 unlinkAnnotation (
const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
485 ome::compat::weak_ptr<ome::xml::model::Plate>
493 const ome::compat::weak_ptr<ome::xml::model::Plate>
502 setPlate (ome::compat::weak_ptr<ome::xml::model::Plate>& plate_BackReference);
526 #endif // OME_XML_MODEL_WELL_H
OME model interface (abstract top-level container)
Definition: OMEModel.h:62
void setExternalDescription(ome::compat::shared_ptr< std::string > &externalDescription)
Set the ExternalDescription property.
Definition: Well.cpp:446
std::vector< ome::compat::shared_ptr< ome::xml::model::WellSample > > & getWellSampleList()
Get the WellSample list.
Definition: Well.cpp:529
ome::compat::shared_ptr< std::string > getExternalIdentifier()
Get the ExternalIdentifier property.
Definition: Well.cpp:397
const ome::compat::weak_ptr< ome::xml::model::Annotation > & setLinkedAnnotation(OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Set linked Annotation.
Definition: Well.cpp:628
const std::string & elementName() const
Get the element name of this model object.
Definition: Well.cpp:222
ome::compat::weak_ptr< ome::xml::model::Reagent > getLinkedReagent()
Get linked Reagent.
Definition: Well.cpp:581
OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type sizeOfLinkedAnnotationList() const
Get size of linked Annotation list.
Definition: Well.cpp:610
DOM Document wrapper.
Definition: Document.h:83
ome::compat::shared_ptr< ome::xml::model::WellSample > & getWellSample(std::vector< ome::compat::shared_ptr< ome::xml::model::WellSample > >::size_type index)
Get WellSample.
Definition: Well.cpp:541
DOM Element wrapper.
Definition: Element.h:66
OME model object (concrete implementation).
Definition: OMEModelObject.h:64
ome::compat::shared_ptr< ome::xml::model::primitives::Color > getColor()
Get the Color property.
Definition: Well.cpp:453
void setRow(const ome::xml::model::primitives::NonNegativeInteger &row)
Set the Row property.
Definition: Well.cpp:516
boost::multi_index_container< Ptr< T >, boost::multi_index::indexed_by< boost::multi_index::random_access<>, boost::multi_index::ordered_unique< boost::multi_index::identity< Ptr< T > >, ome::compat::owner_less< Ptr< T > > > > > type
Multi-index container type.
Definition: OMEModelObject.h:94
const std::string & getID() const
Get the ID property.
Definition: Well.cpp:495
void setWellSample(std::vector< ome::compat::shared_ptr< ome::xml::model::WellSample > >::size_type index, ome::compat::shared_ptr< ome::xml::model::WellSample > &wellSample)
Set WellSample.
Definition: Well.cpp:553
Well model object.
Definition: Well.h:83
static ome::compat::shared_ptr< Well > create(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Create a Well model object from DOM element.
Definition: Well.cpp:213
virtual ~Well()
Destructor.
Definition: Well.cpp:208
const ome::xml::model::primitives::NonNegativeInteger & getRow() const
Get the Row property.
Definition: Well.cpp:509
void setType(ome::compat::shared_ptr< std::string > &type)
Set the Type property.
Definition: Well.cpp:488
bool link(ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)
Link a given OME model object to this model object.
Definition: Well.cpp:355
Multi-index container for efficient ordered insertion and deletion of model object references...
Definition: OMEModelObject.h:85
ome::compat::shared_ptr< Impl > impl
Private implementation details.
Definition: Well.h:86
bool linkAnnotation(const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Link Annotation.
Definition: Well.cpp:638
Open Microscopy Environment C++ implementation.
Definition: CoreMetadata.cpp:40
bool unlinkAnnotation(const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Unlink Annotation.
Definition: Well.cpp:652
void addWellSample(ome::compat::shared_ptr< ome::xml::model::WellSample > &wellSample)
Add WellSample.
Definition: Well.cpp:562
void setID(const std::string &id)
Set the ID property.
Definition: Well.cpp:502
void setExternalIdentifier(ome::compat::shared_ptr< std::string > &externalIdentifier)
Set the ExternalIdentifier property.
Definition: Well.cpp:411
ome::compat::shared_ptr< std::string > getExternalDescription()
Get the ExternalDescription property.
Definition: Well.cpp:432
virtual common::xml::dom::Element asXMLElement(common::xml::dom::Document &document) const
Transform the object hierarchy rooted at this element to XML.
Definition: Well.cpp:691
void unlinkReagent(ome::compat::shared_ptr< ome::xml::model::Reagent > &reagent)
Unlink Reagent.
Definition: Well.cpp:600
virtual common::xml::dom::Element asXMLElementInternal(common::xml::dom::Document &document, common::xml::dom::Element &element) const
Transform the object hierarchy rooted at this element to XML.
Definition: Well.cpp:698
void setColumn(const ome::xml::model::primitives::NonNegativeInteger &column)
Set the Column property.
Definition: Well.cpp:425
bool validElementName(const std::string &name) const
Check if a given element name is valid for processing by this model object.
Definition: Well.cpp:229
ome::compat::weak_ptr< ome::xml::model::Plate > getPlate()
Get the Plate property.
Definition: Well.cpp:670
void removeWellSample(ome::compat::shared_ptr< ome::xml::model::WellSample > &wellSample)
Remove WellSample.
Definition: Well.cpp:570
const ome::xml::model::primitives::NonNegativeInteger & getColumn() const
Get the Column property.
Definition: Well.cpp:418
void linkReagent(ome::compat::shared_ptr< ome::xml::model::Reagent > &reagent)
Link Reagent.
Definition: Well.cpp:594
Private implementation details of Well model object.
Definition: Well.cpp:79
OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type getLinkedAnnotationList() const
Get the linked Annotation list.
Definition: Well.cpp:616
const std::string & getXMLNamespace() const
Get the XML namespace for this model object.
Definition: Well.cpp:844
ome::compat::shared_ptr< std::string > getType()
Get the Type property.
Definition: Well.cpp:474
std::vector< ome::compat::shared_ptr< ome::xml::model::WellSample > >::size_type sizeOfWellSampleList() const
Get size of linked WellSample list.
Definition: Well.cpp:523
const ome::compat::weak_ptr< ome::xml::model::Annotation > & getLinkedAnnotation(OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index) const
Get linked Annotation.
Definition: Well.cpp:622
void setColor(ome::compat::shared_ptr< ome::xml::model::primitives::Color > &color)
Set the Color property.
Definition: Well.cpp:467
virtual void update(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Update the object hierarchy recursively from an XML DOM tree.
Definition: Well.cpp:238
Well()
Default constructor.
Definition: Well.cpp:189
void setPlate(ome::compat::weak_ptr< ome::xml::model::Plate > &plate_BackReference)
Set the Plate property.
Definition: Well.cpp:684
A numeric type constrained to a subrange (or subranges) of its range limits.
Definition: ConstrainedNumeric.h:119
Xerces-C modern C++ wrapper.
Definition: Base.h:53