bioformats  5.1.6
Reagent.h
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38 
39 /*─────────────────────────────────────────────────────────────────────────────
40  *
41  * THIS IS AUTOMATICALLY GENERATED CODE. DO NOT MODIFY.
42  *
43  *─────────────────────────────────────────────────────────────────────────────
44  */
45 
46 #ifndef OME_XML_MODEL_REAGENT_H
47 #define OME_XML_MODEL_REAGENT_H
48 
49 #include <algorithm>
50 #include <list>
51 #include <stdexcept>
52 #include <string>
53 #include <vector>
54 
55 #include <ome/common/log.h>
56 
57 #include <ome/common/xml/dom/Document.h>
58 #include <ome/common/xml/dom/Element.h>
59 #include <ome/common/xml/dom/Node.h>
60 #include <ome/common/xml/dom/NodeList.h>
61 
62 #include <ome/xml/model/Screen.h>
63 #include <ome/xml/model/detail/OMEModelObject.h>
64 
65 namespace ome
66 {
67  namespace xml
68  {
69  namespace model
70  {
71 
72  // Forward declarations.
73  class Annotation;
74  class OMEModel;
75  class Well;
76 
81  {
82  private:
83  class Impl;
85  ome::compat::shared_ptr<Impl> impl;
86 
87  public:
89  Reagent();
90 
96  Reagent (const Reagent& copy);
97 
99  virtual
100  ~Reagent ();
101 
116  static ome::compat::shared_ptr< Reagent>
117  create(const common::xml::dom::Element& element,
119 
120  // Documented in superclass.
121  const std::string&
122  elementName() const;
123 
124  // Documented in superclass.
125  bool
126  validElementName(const std::string& name) const;
127 
128 
129  // -- OMEModelObject API methods --
130 
132  virtual void
133  update(const common::xml::dom::Element& element,
135 
136  public:
137  // -- Reagent API methods --
138 
140  bool
141  link (ome::compat::shared_ptr<Reference>& reference,
142  ome::compat::shared_ptr< ome::xml::model::OMEModelObject>& object);
143 
149  ome::compat::shared_ptr<std::string>
151 
157  const ome::compat::shared_ptr<std::string>
158  getReagentIdentifier () const;
159 
165  void
166  setReagentIdentifier (ome::compat::shared_ptr<std::string>& reagentIdentifier);
167 
173  const std::string&
174  getID () const;
175 
181  void
182  setID (const std::string& id);
183 
189  ome::compat::shared_ptr<std::string>
190  getName ();
191 
197  const ome::compat::shared_ptr<std::string>
198  getName () const;
199 
205  void
206  setName (ome::compat::shared_ptr<std::string>& name);
207 
213  ome::compat::shared_ptr<std::string>
214  getDescription ();
215 
221  const ome::compat::shared_ptr<std::string>
222  getDescription () const;
223 
229  void
230  setDescription (ome::compat::shared_ptr<std::string>& description);
231 
239 
246  getLinkedAnnotationList () const;
247 
255  const ome::compat::weak_ptr<ome::xml::model::Annotation>&
257 
268  const ome::compat::weak_ptr<ome::xml::model::Annotation>&
270  const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
271 
282  bool
283  linkAnnotation (const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
284 
300  bool
301  unlinkAnnotation (const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
302 
308  ome::compat::weak_ptr<ome::xml::model::Screen>
309  getScreen ();
310 
316  const ome::compat::weak_ptr<ome::xml::model::Screen>
317  getScreen () const;
318 
324  void
325  setScreen (ome::compat::weak_ptr<ome::xml::model::Screen>& screen_BackReference);
326 
333  sizeOfLinkedWellList () const;
334 
341  getLinkedWellList () const;
342 
350  const ome::compat::weak_ptr<ome::xml::model::Well>&
352 
363  const ome::compat::weak_ptr<ome::xml::model::Well>&
365  const ome::compat::shared_ptr<ome::xml::model::Well>& well_BackReference);
366 
377  bool
378  linkWell (const ome::compat::shared_ptr<ome::xml::model::Well>& well_BackReference);
379 
395  bool
396  unlinkWell (const ome::compat::shared_ptr<ome::xml::model::Well>& well_BackReference);
397 
398 
401  asXMLElement (common::xml::dom::Document& document) const;
402 
403 
404  protected:
405  // Documented in base class.
408  common::xml::dom::Element& element) const;
409 
410  public:
411  // Documented in superclass.
412  const std::string&
413  getXMLNamespace() const;
414  };
415 
416  }
417  }
418 }
419 
420 #endif // OME_XML_MODEL_REAGENT_H
421 
422 /*
423  * Local Variables:
424  * mode:C++
425  * End:
426  */
OME model interface (abstract top-level container)
Definition: OMEModel.h:62
bool linkWell(const ome::compat::shared_ptr< ome::xml::model::Well > &well_BackReference)
Link Well.
Definition: Reagent.cpp:494
OMEModelObject::indexed_container< ome::xml::model::Well, ome::compat::weak_ptr >::type::size_type sizeOfLinkedWellList() const
Get size of linked Well list.
Definition: Reagent.cpp:466
virtual common::xml::dom::Element asXMLElementInternal(common::xml::dom::Document &document, common::xml::dom::Element &element) const
Transform the object hierarchy rooted at this element to XML.
Definition: Reagent.cpp:531
OMEModelObject::indexed_container< ome::xml::model::Well, ome::compat::weak_ptr >::type getLinkedWellList() const
Get the linked Well list.
Definition: Reagent.cpp:472
void setName(ome::compat::shared_ptr< std::string > &name)
Set the Name property.
Definition: Reagent.cpp:357
const ome::compat::weak_ptr< ome::xml::model::Annotation > & getLinkedAnnotation(OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index) const
Get linked Annotation.
Definition: Reagent.cpp:397
ome::compat::shared_ptr< std::string > getReagentIdentifier()
Get the ReagentIdentifier property.
Definition: Reagent.cpp:308
ome::compat::shared_ptr< std::string > getDescription()
Get the Description property.
Definition: Reagent.cpp:364
bool unlinkAnnotation(const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Unlink Annotation.
Definition: Reagent.cpp:427
const ome::compat::weak_ptr< ome::xml::model::Annotation > & setLinkedAnnotation(OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Set linked Annotation.
Definition: Reagent.cpp:403
DOM Document wrapper.
Definition: Document.h:83
ome::compat::weak_ptr< ome::xml::model::Screen > getScreen()
Get the Screen property.
Definition: Reagent.cpp:445
DOM Element wrapper.
Definition: Element.h:66
const ome::compat::weak_ptr< ome::xml::model::Well > & getLinkedWell(OMEModelObject::indexed_container< ome::xml::model::Well, ome::compat::weak_ptr >::type::size_type index) const
Get linked Well.
Definition: Reagent.cpp:478
OME model object (concrete implementation).
Definition: OMEModelObject.h:64
boost::multi_index_container< Ptr< T >, boost::multi_index::indexed_by< boost::multi_index::random_access<>, boost::multi_index::ordered_unique< boost::multi_index::identity< Ptr< T > >, ome::compat::owner_less< Ptr< T > > > > > type
Multi-index container type.
Definition: OMEModelObject.h:94
bool unlinkWell(const ome::compat::shared_ptr< ome::xml::model::Well > &well_BackReference)
Unlink Well.
Definition: Reagent.cpp:507
const ome::compat::weak_ptr< ome::xml::model::Well > & setLinkedWell(OMEModelObject::indexed_container< ome::xml::model::Well, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Well > &well_BackReference)
Set linked Well.
Definition: Reagent.cpp:484
OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type sizeOfLinkedAnnotationList() const
Get size of linked Annotation list.
Definition: Reagent.cpp:385
void setReagentIdentifier(ome::compat::shared_ptr< std::string > &reagentIdentifier)
Set the ReagentIdentifier property.
Definition: Reagent.cpp:322
void setID(const std::string &id)
Set the ID property.
Definition: Reagent.cpp:336
void setScreen(ome::compat::weak_ptr< ome::xml::model::Screen > &screen_BackReference)
Set the Screen property.
Definition: Reagent.cpp:459
Multi-index container for efficient ordered insertion and deletion of model object references...
Definition: OMEModelObject.h:85
Reagent model object.
Definition: Reagent.h:80
Open Microscopy Environment C++ implementation.
Definition: CoreMetadata.cpp:40
const std::string & elementName() const
Get the element name of this model object.
Definition: Reagent.cpp:189
void setDescription(ome::compat::shared_ptr< std::string > &description)
Set the Description property.
Definition: Reagent.cpp:378
bool linkAnnotation(const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Link Annotation.
Definition: Reagent.cpp:413
const std::string & getID() const
Get the ID property.
Definition: Reagent.cpp:329
virtual ~Reagent()
Destructor.
Definition: Reagent.cpp:175
virtual void update(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Update the object hierarchy recursively from an XML DOM tree.
Definition: Reagent.cpp:205
virtual common::xml::dom::Element asXMLElement(common::xml::dom::Document &document) const
Transform the object hierarchy rooted at this element to XML.
Definition: Reagent.cpp:524
bool link(ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)
Link a given OME model object to this model object.
Definition: Reagent.cpp:277
static ome::compat::shared_ptr< Reagent > create(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Create a Reagent model object from DOM element.
Definition: Reagent.cpp:180
const std::string & getXMLNamespace() const
Get the XML namespace for this model object.
Definition: Reagent.cpp:620
ome::compat::shared_ptr< Impl > impl
Private implementation details.
Definition: Reagent.h:83
OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type getLinkedAnnotationList() const
Get the linked Annotation list.
Definition: Reagent.cpp:391
Boost.Log compatibility.
bool validElementName(const std::string &name) const
Check if a given element name is valid for processing by this model object.
Definition: Reagent.cpp:196
Private implementation details of Reagent model object.
Definition: Reagent.cpp:74
Reagent()
Default constructor.
Definition: Reagent.cpp:156
Xerces-C modern C++ wrapper.
Definition: Base.h:53
ome::compat::shared_ptr< std::string > getName()
Get the Name property.
Definition: Reagent.cpp:343