46 #ifndef OME_XML_MODEL_WELLSAMPLE_H
47 #define OME_XML_MODEL_WELLSAMPLE_H
57 #include <ome/common/xml/dom/Document.h>
58 #include <ome/common/xml/dom/Element.h>
59 #include <ome/common/xml/dom/Node.h>
60 #include <ome/common/xml/dom/NodeList.h>
62 #include <ome/xml/model/Image.h>
63 #include <ome/xml/model/Well.h>
64 #include <ome/xml/model/detail/OMEModelObject.h>
65 #include <ome/xml/model/primitives/NonNegativeInteger.h>
66 #include <ome/xml/model/primitives/Timestamp.h>
78 class PlateAcquisition;
95 ome::compat::shared_ptr<ome::xml::model::primitives::Timestamp>
timepoint;
97 ome::compat::weak_ptr<ome::xml::model::Image>
image;
103 ome::compat::weak_ptr<ome::xml::model::Well>
well;
136 static ome::compat::shared_ptr< WellSample>
161 link (ome::compat::shared_ptr<Reference>& reference,
162 ome::compat::shared_ptr< ome::xml::model::OMEModelObject>&
object);
185 ome::compat::shared_ptr<double>
193 const ome::compat::shared_ptr<double>
202 setPositionX (ome::compat::shared_ptr<double>& positionX);
209 ome::compat::shared_ptr<double>
217 const ome::compat::shared_ptr<double>
226 setPositionY (ome::compat::shared_ptr<double>& positionY);
242 setID (
const std::string&
id);
249 ome::compat::shared_ptr<ome::xml::model::primitives::Timestamp>
257 const ome::compat::shared_ptr<ome::xml::model::primitives::Timestamp>
266 setTimepoint (ome::compat::shared_ptr<ome::xml::model::primitives::Timestamp>& timepoint);
274 ome::compat::weak_ptr<ome::xml::model::Image>
283 const ome::compat::weak_ptr<ome::xml::model::Image>
292 linkImage (ome::compat::shared_ptr<ome::xml::model::Image>& image);
304 unlinkImage (ome::compat::shared_ptr<ome::xml::model::Image>& image);
329 const ome::compat::weak_ptr<ome::xml::model::Annotation>&
342 const ome::compat::weak_ptr<ome::xml::model::Annotation>&
344 const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
357 linkAnnotation (
const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
375 unlinkAnnotation (
const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
400 const ome::compat::weak_ptr<ome::xml::model::PlateAcquisition>&
413 const ome::compat::weak_ptr<ome::xml::model::PlateAcquisition>&
415 const ome::compat::shared_ptr<ome::xml::model::PlateAcquisition>& plateAcquisition_BackReference);
428 linkPlateAcquisition (
const ome::compat::shared_ptr<ome::xml::model::PlateAcquisition>& plateAcquisition_BackReference);
446 unlinkPlateAcquisition (
const ome::compat::shared_ptr<ome::xml::model::PlateAcquisition>& plateAcquisition_BackReference);
453 ome::compat::weak_ptr<ome::xml::model::Well>
461 const ome::compat::weak_ptr<ome::xml::model::Well>
470 setWell (ome::compat::weak_ptr<ome::xml::model::Well>& well_BackReference);
494 #endif // OME_XML_MODEL_WELLSAMPLE_H
OME model interface (abstract top-level container)
Definition: OMEModel.h:62
void setIndex(const ome::xml::model::primitives::NonNegativeInteger &index)
Set the Index property.
Definition: WellSample.cpp:326
bool linkPlateAcquisition(const ome::compat::shared_ptr< ome::xml::model::PlateAcquisition > &plateAcquisition_BackReference)
Link PlateAcquisition.
Definition: WellSample.cpp:527
void setID(const std::string &id)
Set the ID property.
Definition: WellSample.cpp:382
ome::compat::weak_ptr< ome::xml::model::Well > getWell()
Get the Well property.
Definition: WellSample.cpp:557
virtual common::xml::dom::Element asXMLElement(common::xml::dom::Document &document) const
Transform the object hierarchy rooted at this element to XML.
Definition: WellSample.cpp:578
ome::compat::shared_ptr< ome::xml::model::primitives::Timestamp > timepoint
Timepoint property.
Definition: WellSample.h:95
void setPositionY(ome::compat::shared_ptr< double > &positionY)
Set the PositionY property.
Definition: WellSample.cpp:368
OMEModelObject::indexed_container< ome::xml::model::PlateAcquisition, ome::compat::weak_ptr >::type plateAcquisitions
PlateAcquisition_BackReference back reference (occurs more than once)
Definition: WellSample.h:101
virtual void update(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Update the object hierarchy recursively from an XML DOM tree.
Definition: WellSample.cpp:190
ome::compat::weak_ptr< ome::xml::model::Image > getLinkedImage()
Get linked Image.
Definition: WellSample.cpp:410
const ome::compat::weak_ptr< ome::xml::model::PlateAcquisition > & setLinkedPlateAcquisition(OMEModelObject::indexed_container< ome::xml::model::PlateAcquisition, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::PlateAcquisition > &plateAcquisition_BackReference)
Set linked PlateAcquisition.
Definition: WellSample.cpp:517
ome::compat::shared_ptr< double > positionX
PositionX property.
Definition: WellSample.h:89
void setPositionX(ome::compat::shared_ptr< double > &positionX)
Set the PositionX property.
Definition: WellSample.cpp:347
OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type getLinkedAnnotationList() const
Get the linked Annotation list.
Definition: WellSample.cpp:445
ome::xml::model::primitives::NonNegativeInteger index
Index property.
Definition: WellSample.h:87
ome::compat::shared_ptr< double > getPositionY()
Get the PositionY property.
Definition: WellSample.cpp:354
const ome::compat::weak_ptr< ome::xml::model::PlateAcquisition > & getLinkedPlateAcquisition(OMEModelObject::indexed_container< ome::xml::model::PlateAcquisition, ome::compat::weak_ptr >::type::size_type index) const
Get linked PlateAcquisition.
Definition: WellSample.cpp:511
DOM Document wrapper.
Definition: Document.h:82
DOM Element wrapper.
Definition: Element.h:66
OME model object (concrete implementation).
Definition: OMEModelObject.h:64
boost::multi_index_container< Ptr< T >, boost::multi_index::indexed_by< boost::multi_index::random_access<>, boost::multi_index::ordered_unique< boost::multi_index::identity< Ptr< T > >, ome::compat::owner_less< Ptr< T > > > > > type
Multi-index container type.
Definition: OMEModelObject.h:94
OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type annotationLinks
AnnotationRef reference (occurs more than once)
Definition: WellSample.h:99
virtual ~WellSample()
Destructor.
Definition: WellSample.cpp:160
std::string id
ID property.
Definition: WellSample.h:93
bool validElementName(const std::string &name) const
Check if a given element name is valid for processing by this model object.
Definition: WellSample.cpp:181
static ome::compat::shared_ptr< WellSample > create(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Create a WellSample model object from DOM element.
Definition: WellSample.cpp:165
void setWell(ome::compat::weak_ptr< ome::xml::model::Well > &well_BackReference)
Set the Well property.
Definition: WellSample.cpp:571
void unlinkImage(ome::compat::shared_ptr< ome::xml::model::Image > &image)
Unlink Image.
Definition: WellSample.cpp:429
Multi-index container for efficient ordered insertion and deletion of model object references...
Definition: OMEModelObject.h:85
OMEModelObject::indexed_container< ome::xml::model::PlateAcquisition, ome::compat::weak_ptr >::type::size_type sizeOfLinkedPlateAcquisitionList() const
Get size of linked PlateAcquisition list.
Definition: WellSample.cpp:499
Open Microscopy Environment C++ implementation.
Definition: CoreMetadata.cpp:40
bool unlinkPlateAcquisition(const ome::compat::shared_ptr< ome::xml::model::PlateAcquisition > &plateAcquisition_BackReference)
Unlink PlateAcquisition.
Definition: WellSample.cpp:540
virtual common::xml::dom::Element asXMLElementInternal(common::xml::dom::Document &document, common::xml::dom::Element &element) const
Transform the object hierarchy rooted at this element to XML.
Definition: WellSample.cpp:585
WellSample model object.
Definition: WellSample.h:83
OMEModelObject::indexed_container< ome::xml::model::PlateAcquisition, ome::compat::weak_ptr >::type getLinkedPlateAcquisitionList() const
Get the linked PlateAcquisition list.
Definition: WellSample.cpp:505
const ome::compat::weak_ptr< ome::xml::model::Annotation > & getLinkedAnnotation(OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index) const
Get linked Annotation.
Definition: WellSample.cpp:451
ome::compat::shared_ptr< double > positionY
PositionY property.
Definition: WellSample.h:91
bool linkAnnotation(const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Link Annotation.
Definition: WellSample.cpp:467
void linkImage(ome::compat::shared_ptr< ome::xml::model::Image > &image)
Link Image.
Definition: WellSample.cpp:423
void setTimepoint(ome::compat::shared_ptr< ome::xml::model::primitives::Timestamp > &timepoint)
Set the Timepoint property.
Definition: WellSample.cpp:403
const std::string & getXMLNamespace() const
Get the XML namespace for this model object.
Definition: WellSample.cpp:696
WellSample()
Default constructor.
Definition: WellSample.cpp:125
ome::compat::weak_ptr< ome::xml::model::Image > image
ImageRef reference.
Definition: WellSample.h:97
bool unlinkAnnotation(const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Unlink Annotation.
Definition: WellSample.cpp:481
ome::compat::weak_ptr< ome::xml::model::Well > well
Well_BackReference back reference.
Definition: WellSample.h:103
const std::string & elementName() const
Get the element name of this model object.
Definition: WellSample.cpp:174
const ome::xml::model::primitives::NonNegativeInteger & getIndex() const
Get the Index property.
Definition: WellSample.cpp:319
const ome::compat::weak_ptr< ome::xml::model::Annotation > & setLinkedAnnotation(OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Set linked Annotation.
Definition: WellSample.cpp:457
OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type sizeOfLinkedAnnotationList() const
Get size of linked Annotation list.
Definition: WellSample.cpp:439
ome::compat::shared_ptr< ome::xml::model::primitives::Timestamp > getTimepoint()
Get the Timepoint property.
Definition: WellSample.cpp:389
ome::compat::shared_ptr< double > getPositionX()
Get the PositionX property.
Definition: WellSample.cpp:333
bool link(ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)
Link a given OME model object to this model object.
Definition: WellSample.cpp:277
const std::string & getID() const
Get the ID property.
Definition: WellSample.cpp:375
A numeric type constrained to a subrange (or subranges) of its range limits.
Definition: ConstrainedNumeric.h:119
Xerces-C modern C++ wrapper.
Definition: Base.h:53