46 #ifndef OME_XML_MODEL_SCREEN_H
47 #define OME_XML_MODEL_SCREEN_H
57 #include <ome/common/xml/dom/Document.h>
58 #include <ome/common/xml/dom/Element.h>
59 #include <ome/common/xml/dom/Node.h>
60 #include <ome/common/xml/dom/NodeList.h>
62 #include <ome/xml/model/detail/OMEModelObject.h>
84 ome::compat::shared_ptr<std::string>
name;
92 ome::compat::shared_ptr<std::string>
type;
100 std::vector<ome::compat::shared_ptr<ome::xml::model::Reagent> >
reagents;
137 static ome::compat::shared_ptr< Screen>
162 link (ome::compat::shared_ptr<Reference>& reference,
163 ome::compat::shared_ptr< ome::xml::model::OMEModelObject>&
object);
170 ome::compat::shared_ptr<std::string>
178 const ome::compat::shared_ptr<std::string>
187 setName (ome::compat::shared_ptr<std::string>& name);
194 ome::compat::shared_ptr<std::string>
202 const ome::compat::shared_ptr<std::string>
218 ome::compat::shared_ptr<std::string>
226 const ome::compat::shared_ptr<std::string>
242 ome::compat::shared_ptr<std::string>
250 const ome::compat::shared_ptr<std::string>
266 ome::compat::shared_ptr<std::string>
274 const ome::compat::shared_ptr<std::string>
283 setType (ome::compat::shared_ptr<std::string>& type);
299 setID (
const std::string&
id);
306 ome::compat::shared_ptr<std::string>
314 const ome::compat::shared_ptr<std::string>
330 ome::compat::shared_ptr<std::string>
338 const ome::compat::shared_ptr<std::string>
347 setDescription (ome::compat::shared_ptr<std::string>& description);
354 std::vector<ome::compat::shared_ptr<ome::xml::model::Reagent> >::size_type
363 std::vector<ome::compat::shared_ptr<ome::xml::model::Reagent> >&
372 const std::vector<ome::compat::shared_ptr<ome::xml::model::Reagent> >&
382 ome::compat::shared_ptr<ome::xml::model::Reagent>&
383 getReagent (std::vector<ome::compat::shared_ptr<ome::xml::model::Reagent> >::size_type index);
392 const ome::compat::shared_ptr<ome::xml::model::Reagent>&
393 getReagent (std::vector<ome::compat::shared_ptr<ome::xml::model::Reagent> >::size_type index)
const;
403 setReagent (std::vector<ome::compat::shared_ptr<ome::xml::model::Reagent> >::size_type index,
404 ome::compat::shared_ptr<ome::xml::model::Reagent>& reagent);
415 addReagent (ome::compat::shared_ptr<ome::xml::model::Reagent>& reagent);
427 removeReagent (ome::compat::shared_ptr<ome::xml::model::Reagent>& reagent);
452 const ome::compat::weak_ptr<ome::xml::model::Plate>&
465 const ome::compat::weak_ptr<ome::xml::model::Plate>&
467 const ome::compat::shared_ptr<ome::xml::model::Plate>& plate);
480 linkPlate (
const ome::compat::shared_ptr<ome::xml::model::Plate>& plate);
498 unlinkPlate (
const ome::compat::shared_ptr<ome::xml::model::Plate>& plate);
523 const ome::compat::weak_ptr<ome::xml::model::Annotation>&
536 const ome::compat::weak_ptr<ome::xml::model::Annotation>&
538 const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
551 linkAnnotation (
const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
569 unlinkAnnotation (
const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
593 #endif // OME_XML_MODEL_SCREEN_H
OME model interface (abstract top-level container)
Definition: OMEModel.h:62
const std::string & elementName() const
Get the element name of this model object.
Definition: Screen.cpp:184
ome::compat::shared_ptr< std::string > type
Type property.
Definition: Screen.h:92
const std::string & getID() const
Get the ID property.
Definition: Screen.cpp:484
std::vector< ome::compat::shared_ptr< ome::xml::model::Reagent > > & getReagentList()
Get the Reagent list.
Definition: Screen.cpp:546
const ome::compat::weak_ptr< ome::xml::model::Plate > & getLinkedPlate(OMEModelObject::indexed_container< ome::xml::model::Plate, ome::compat::weak_ptr >::type::size_type index) const
Get linked Plate.
Definition: Screen.cpp:610
ome::compat::shared_ptr< std::string > getType()
Get the Type property.
Definition: Screen.cpp:463
ome::compat::shared_ptr< ome::xml::model::Reagent > & getReagent(std::vector< ome::compat::shared_ptr< ome::xml::model::Reagent > >::size_type index)
Get Reagent.
Definition: Screen.cpp:558
const ome::compat::weak_ptr< ome::xml::model::Plate > & setLinkedPlate(OMEModelObject::indexed_container< ome::xml::model::Plate, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Plate > &plate)
Set linked Plate.
Definition: Screen.cpp:616
DOM Document wrapper.
Definition: Document.h:80
DOM Element wrapper.
Definition: Element.h:66
ome::compat::shared_ptr< std::string > getReagentSetDescription()
Get the ReagentSetDescription property.
Definition: Screen.cpp:442
OME model object (concrete implementation).
Definition: OMEModelObject.h:64
Screen()
Default constructor.
Definition: Screen.cpp:131
boost::multi_index_container< Ptr< T >, boost::multi_index::indexed_by< boost::multi_index::random_access<>, boost::multi_index::ordered_unique< boost::multi_index::identity< Ptr< T > >, ome::compat::owner_less< Ptr< T > > > > > type
Multi-index container type.
Definition: OMEModelObject.h:94
void setDescription(ome::compat::shared_ptr< std::string > &description)
Set the Description property.
Definition: Screen.cpp:533
virtual void update(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Update the object hierarchy recursively from an XML DOM tree.
Definition: Screen.cpp:200
virtual common::xml::dom::Element asXMLElementInternal(common::xml::dom::Document &document, common::xml::dom::Element &element) const
Transform the object hierarchy rooted at this element to XML.
Definition: Screen.cpp:725
bool linkAnnotation(const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Link Annotation.
Definition: Screen.cpp:686
ome::compat::shared_ptr< std::string > reagentSetDescription
ReagentSetDescription property.
Definition: Screen.h:90
OMEModelObject::indexed_container< ome::xml::model::Plate, ome::compat::weak_ptr >::type getLinkedPlateList() const
Get the linked Plate list.
Definition: Screen.cpp:604
void setName(ome::compat::shared_ptr< std::string > &name)
Set the Name property.
Definition: Screen.cpp:393
bool link(ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)
Link a given OME model object to this model object.
Definition: Screen.cpp:332
void addReagent(ome::compat::shared_ptr< ome::xml::model::Reagent > &reagent)
Add Reagent.
Definition: Screen.cpp:579
OMEModelObject::indexed_container< ome::xml::model::Plate, ome::compat::weak_ptr >::type plateLinks
PlateRef reference (occurs more than once)
Definition: Screen.h:102
Screen model object.
Definition: Screen.h:80
const std::string & getXMLNamespace() const
Get the XML namespace for this model object.
Definition: Screen.cpp:896
Multi-index container for efficient ordered insertion and deletion of model object references...
Definition: OMEModelObject.h:85
static ome::compat::shared_ptr< Screen > create(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Create a Screen model object from DOM element.
Definition: Screen.cpp:175
Open Microscopy Environment C++ implementation.
Definition: CoreMetadata.cpp:40
ome::compat::shared_ptr< std::string > getName()
Get the Name property.
Definition: Screen.cpp:379
bool unlinkAnnotation(const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Unlink Annotation.
Definition: Screen.cpp:700
OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type getLinkedAnnotationList() const
Get the linked Annotation list.
Definition: Screen.cpp:664
ome::compat::shared_ptr< std::string > protocolIdentifier
ProtocolIdentifier property.
Definition: Screen.h:88
const ome::compat::weak_ptr< ome::xml::model::Annotation > & setLinkedAnnotation(OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Set linked Annotation.
Definition: Screen.cpp:676
ome::compat::shared_ptr< std::string > name
Name property.
Definition: Screen.h:84
std::vector< ome::compat::shared_ptr< ome::xml::model::Reagent > >::size_type sizeOfReagentList() const
Get size of linked Reagent list.
Definition: Screen.cpp:540
ome::compat::shared_ptr< std::string > getProtocolDescription()
Get the ProtocolDescription property.
Definition: Screen.cpp:400
void setReagent(std::vector< ome::compat::shared_ptr< ome::xml::model::Reagent > >::size_type index, ome::compat::shared_ptr< ome::xml::model::Reagent > &reagent)
Set Reagent.
Definition: Screen.cpp:570
ome::compat::shared_ptr< std::string > description
Description property.
Definition: Screen.h:98
virtual ~Screen()
Destructor.
Definition: Screen.cpp:170
void setReagentSetIdentifier(ome::compat::shared_ptr< std::string > &reagentSetIdentifier)
Set the ReagentSetIdentifier property.
Definition: Screen.cpp:512
void removeReagent(ome::compat::shared_ptr< ome::xml::model::Reagent > &reagent)
Remove Reagent.
Definition: Screen.cpp:587
void setProtocolDescription(ome::compat::shared_ptr< std::string > &protocolDescription)
Set the ProtocolDescription property.
Definition: Screen.cpp:414
ome::compat::shared_ptr< std::string > protocolDescription
ProtocolDescription property.
Definition: Screen.h:86
bool linkPlate(const ome::compat::shared_ptr< ome::xml::model::Plate > &plate)
Link Plate.
Definition: Screen.cpp:626
ome::compat::shared_ptr< std::string > getReagentSetIdentifier()
Get the ReagentSetIdentifier property.
Definition: Screen.cpp:498
ome::compat::shared_ptr< std::string > getDescription()
Get the Description property.
Definition: Screen.cpp:519
std::string id
ID property.
Definition: Screen.h:94
void setProtocolIdentifier(ome::compat::shared_ptr< std::string > &protocolIdentifier)
Set the ProtocolIdentifier property.
Definition: Screen.cpp:435
ome::compat::shared_ptr< std::string > reagentSetIdentifier
ReagentSetIdentifier property.
Definition: Screen.h:96
void setType(ome::compat::shared_ptr< std::string > &type)
Set the Type property.
Definition: Screen.cpp:477
ome::compat::shared_ptr< std::string > getProtocolIdentifier()
Get the ProtocolIdentifier property.
Definition: Screen.cpp:421
bool unlinkPlate(const ome::compat::shared_ptr< ome::xml::model::Plate > &plate)
Unlink Plate.
Definition: Screen.cpp:640
virtual common::xml::dom::Element asXMLElement(common::xml::dom::Document &document) const
Transform the object hierarchy rooted at this element to XML.
Definition: Screen.cpp:718
OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type sizeOfLinkedAnnotationList() const
Get size of linked Annotation list.
Definition: Screen.cpp:658
OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type annotationLinks
AnnotationRef reference (occurs more than once)
Definition: Screen.h:104
const ome::compat::weak_ptr< ome::xml::model::Annotation > & getLinkedAnnotation(OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index) const
Get linked Annotation.
Definition: Screen.cpp:670
void setReagentSetDescription(ome::compat::shared_ptr< std::string > &reagentSetDescription)
Set the ReagentSetDescription property.
Definition: Screen.cpp:456
std::vector< ome::compat::shared_ptr< ome::xml::model::Reagent > > reagents
Reagent property (occurs more than once)
Definition: Screen.h:100
bool validElementName(const std::string &name) const
Check if a given element name is valid for processing by this model object.
Definition: Screen.cpp:191
Xerces-C modern C++ wrapper.
Definition: Base.h:53
OMEModelObject::indexed_container< ome::xml::model::Plate, ome::compat::weak_ptr >::type::size_type sizeOfLinkedPlateList() const
Get size of linked Plate list.
Definition: Screen.cpp:598
void setID(const std::string &id)
Set the ID property.
Definition: Screen.cpp:491