OMERO.figure Update

10th February 2015

Will Moore

Main New Features

Since 1.0.0 release, Oct 2014

• Multi-page figures
• Crop to ROI
• Scalebar Labels
• Sync Magnification
• Units Support

More Paper Sizes

• First external PR! (Yohan Jarosz)
• Extra sizes: A0, A1, A2, A3
• E.g. Make a poster!

Multiple pages

Crop panels to region/ROI

Scalebar Labels

Align Magnification

OMERO 5.1 support

• OMERO.figure works with 5.0 and 5.1 servers
• json API unchanged
• Units support:
  • Pixel Size units are read, stored & used...
  • Currently assuming planeInfo.deltaT is seconds

planeInfo.getDeltaT().getValue()  # 5.1 returns omero.model.TimeI

planeInfo.deltaT.getValue()       # same for 5.0 & 5.1
                    

OMERO 5.1 Pixel Size Units

• New Images store pixel size UNIT & Symbol
  • E.g. 'MICROMETER', 'µm'
• Symbol used for scalebar (user can't change this)
• Conversion needed for 'Align Magnification'

{
    symbol: "µm",
    unit: "MICROMETER",
    value: 0.123049
}

Also fixed...

• Unicode support (utf8 encoded on save)
• Escape HTML, using 'underscore' library

  
      _.escape("<script>")
  
  

• Panel background color is white in Web & PDF export

Plan to release after 5.1

• Release will be 1.1.0 (no point releases since 1.0.0)
• Currently updating OMERO.figure Testing Scenarios
• Would love to have... 5.0 AND 5.1 test server jobs