Package | Description |
---|---|
ome.formats | |
ome.formats.importer.util | |
ome.logic |
The central repository of implementations which will be accessible through this server.
|
ome.security.basic |
Basic OMERO security contextual classes
Basic classes that provide security context objects necessary to secure the implementation of
the OMERO server on a JBoss platform.
|
ome.services.blitz.fire | |
ome.services.fulltext |
All necessary classes for background indexing of metadata and attached binary
files.
|
ome.services.pixeldata | |
ome.services.procs |
Internal process and process management
This includes interfaces and classes that provide thread process management for internal
processes critical to the operation of the OMERO server.
|
ome.services.scripts | |
ome.services.search |
Internal search implementation classes.
|
ome.services.util |
Helper classes to support OMERO service beans
Instead of abstract classes, IOC methods and dependency injection is used to provide service
interception for the Service (binary) bean classes.
|
ome.tools.spring |
OMERO Server tools specific to Spring
Classes/Interfaces that implement AOP, Post-processing injection, session flushing,
and factory management.
|
omero.cmd |
Constructor and Description |
---|
OMEROMetadataStore(ServiceFactory factory)
Creates a new instance.
|
Constructor and Description |
---|
TinyImportFixture(ServiceFactory services) |
Modifier and Type | Method and Description |
---|---|
protected ServiceFactory |
HardWiredInterceptor.getServiceFactory(MethodInvocation mi) |
Modifier and Type | Method and Description |
---|---|
static void |
HardWiredInterceptor.initializeUserAttributes(MethodInvocation mi,
ServiceFactory sf,
Principal pr,
AtomicBoolean reusedSession)
Adds the given environment context objects to the
ReflectiveMethodInvocation.getUserAttributes()
Map for lookup in subclasses |
Modifier and Type | Field and Description |
---|---|
protected ServiceFactory |
BasicSecuritySystem.sf |
Modifier and Type | Method and Description |
---|---|
static BasicSecuritySystem |
BasicSecuritySystem.selfConfigure(SessionManager sm,
ServiceFactory sf)
Simpilifed factory method which generates all the security primitives
internally.
|
Constructor and Description |
---|
BasicSecuritySystem(OmeroInterceptor interceptor,
SystemTypes sysTypes,
CurrentDetails cd,
SessionManager sessionManager,
Roles roles,
ServiceFactory sf,
TokenHolder tokenHolder,
SecurityFilter filter)
Main public constructor for this
SecuritySystem implementation. |
Constructor and Description |
---|
AopContextInitializer(ServiceFactory sf,
Principal p,
AtomicBoolean reusedSession) |
Modifier and Type | Method and Description |
---|---|
Object |
FullTextIndexer.doWork(org.hibernate.Session session,
ServiceFactory sf)
Runs
FullTextIndexer.doIndexing(FullTextSession) within a Lucene transaction. |
Modifier and Type | Method and Description |
---|---|
Object |
PixelDataHandler.doWork(org.hibernate.Session session,
ServiceFactory sf)
Handles only single elements from the
PersistentEventLogLoader
in order to keep transactions short and safe. |
protected ome.model.core.Pixels |
PixelDataHandler.getPixels(Long id,
ServiceFactory sf) |
boolean |
PixelDataHandler.process(Long id,
ServiceFactory sf,
org.hibernate.Session s)
Here we assume that our log loader will only return
us the proper types, since we are using the specific
type defined in this package.
|
Modifier and Type | Method and Description |
---|---|
List<ome.model.jobs.Job> |
ProcessManager.Work.doWork(org.hibernate.Session session,
ServiceFactory sf) |
protected ome.model.jobs.Job |
ProcessManager.Work.job(ServiceFactory sf,
long id) |
void |
ProcessManager.Work.startProcess(ServiceFactory sf,
long jobId) |
Modifier and Type | Method and Description |
---|---|
protected ome.model.core.OriginalFile |
ScriptRepoHelper.addOrReplace(org.hibernate.Session session,
ome.util.SqlAction sqlAction,
ServiceFactory sf,
RepoFile repoFile,
Long old) |
omero.model.ScriptJob |
ScriptFinder.createJob(ServiceFactory sf)
Returns a fresh (unsaved)
ScriptJob which can be passed to
acquireProcessor for background processing. |
omero.model.OriginalFileI |
ScriptFinder.getFile(ServiceFactory sf) |
protected List<ome.model.core.OriginalFile> |
ScriptFinder.loadScripts(ServiceFactory sf,
ome.parameters.Parameters p)
Load all scripts that match the name, sha1, and format for script
|
Modifier and Type | Method and Description |
---|---|
Object |
AnnotatedWith.doWork(org.hibernate.Session session,
ServiceFactory sf) |
Object |
Complement.doWork(org.hibernate.Session session,
ServiceFactory sf) |
Object |
FullText.doWork(org.hibernate.Session s,
ServiceFactory sf) |
Object |
HqlQuery.doWork(org.hibernate.Session session,
ServiceFactory sf) |
Object |
Intersection.doWork(org.hibernate.Session session,
ServiceFactory sf) |
Object |
SimilarTerms.doWork(org.hibernate.Session s,
ServiceFactory sf) |
Object |
TagsAndGroups.doWork(org.hibernate.Session session,
ServiceFactory sf) |
Object |
Union.doWork(org.hibernate.Session session,
ServiceFactory sf) |
Modifier and Type | Method and Description |
---|---|
Object |
Executor.Work.doWork(org.hibernate.Session session,
ServiceFactory sf)
Work method.
|
Modifier and Type | Class and Description |
---|---|
class |
InternalServiceFactory
subclass of ome.system.ServiceFactory which retrieves unmanaged ("internal")
service- instances. |
class |
ManagedServiceFactory
subclass of ome.system.ServiceFactory which retrieves managed
service- instances. |
Modifier and Type | Method and Description |
---|---|
ServiceFactory |
Helper.getServiceFactory() |
Modifier and Type | Method and Description |
---|---|
List<Object> |
HandleI.doRun(ome.util.SqlAction sql,
org.hibernate.Session session,
ServiceFactory sf) |
List<Object> |
HandleI.steps(ome.util.SqlAction sql,
org.hibernate.Session session,
ServiceFactory sf) |
Constructor and Description |
---|
Helper(omero.cmd.Request request,
omero.cmd.Status status,
ome.util.SqlAction sql,
org.hibernate.Session session,
ServiceFactory sf) |
Version: 4.4.12-ice34-b116
Copyright © 2014 The University of Dundee & Open Microscopy Environment. All Rights Reserved.