Package | Description |
---|---|
ome.logic |
The central repository of implementations which will be accessible through this server.
|
ome.services |
Base services package for OMERO API services
This includes classes that implement OMERO API services described as interfaces in the
OMERO Common component.
|
ome.services.blitz.fire | |
ome.services.blitz.impl | |
ome.services.blitz.redirect | |
ome.services.blitz.repo | |
ome.services.blitz.util | |
ome.services.export |
Helpers for implementing the necessary interfaces from Bio-Formats for
mapping OMERO objects (ome.model.*) to OME-XML and OME-TIFF
|
ome.services.fulltext |
All necessary classes for background indexing of metadata and attached binary
files.
|
ome.services.pixeldata | |
ome.services.procs |
Internal process and process management
This includes interfaces and classes that provide thread process management for internal
processes critical to the operation of the OMERO server.
|
ome.services.roi | |
ome.services.scripts | |
ome.services.sessions | |
ome.services.sharing |
ome.api.IShare support infrastructure.
|
ome.services.throttling | |
ome.services.util |
Helper classes to support OMERO service beans
Instead of abstract classes, IOC methods and dependency injection is used to provide service
interception for the Service (binary) bean classes.
|
omero.cmd | |
omero.grid |
Modifier and Type | Field and Description |
---|---|
protected Executor |
UpdateImpl.executor |
Modifier and Type | Method and Description |
---|---|
void |
UpdateImpl.setExecutor(Executor executor) |
Modifier and Type | Method and Description |
---|---|
void |
SearchBean.setExecutor(Executor executor)
Injector used by Spring, currently, since
SelfConfigurableService.selfConfigure() requires it. |
Constructor and Description |
---|
RenderingBean(PixelsService dataService,
LocalCompress compress,
Executor ex,
SecuritySystem secSys)
Compression service Bean injector.
|
SearchBean(Executor executor,
Class<? extends org.apache.lucene.analysis.Analyzer> analyzer) |
Modifier and Type | Field and Description |
---|---|
protected Executor |
SessionManagerI.executor |
Constructor and Description |
---|
PermissionsVerifierI(Ring ring,
SessionManager manager,
Executor ex,
String uuid) |
Ring(String uuid,
Executor executor) |
Ring(String uuid,
Executor executor,
Redirector redirector) |
SessionManagerI(Ring ring,
Ice.ObjectAdapter adapter,
SecuritySystem secSys,
SessionManager sessionManager,
Executor executor,
TopicManager topicManager,
Registry reg,
int servantsPerSession) |
Constructor and Description |
---|
ServiceFactoryI(boolean reusedSession,
Ice.Current current,
ServantHolder holder,
Glacier2.SessionControlPrx control,
OmeroContext context,
SessionManager manager,
Executor executor,
Principal p,
List<HardWiredInterceptor> interceptors,
TopicManager topicManager,
Registry registry) |
ServiceFactoryI(Ice.Current current,
ServantHolder holder,
Glacier2.SessionControlPrx control,
OmeroContext context,
SessionManager manager,
Executor executor,
Principal p,
List<HardWiredInterceptor> interceptors,
TopicManager topicManager,
Registry registry) |
Modifier and Type | Field and Description |
---|---|
protected Executor |
AbstractRedirector.executor |
Constructor and Description |
---|
AbstractRedirector(Executor ex) |
ConfigRedirector(Executor ex) |
ScaleRedirector(Executor ex) |
Constructor and Description |
---|
AbstractRepositoryI(Ice.ObjectAdapter oa,
Registry reg,
Executor ex,
ome.util.SqlAction sql,
String sessionUuid,
FileMaker fileMaker) |
AbstractRepositoryI(Ice.ObjectAdapter oa,
Registry reg,
Executor ex,
ome.util.SqlAction sql,
String sessionUuid,
String repoDir) |
InternalRepositoryI(Ice.ObjectAdapter oa,
Registry reg,
Executor ex,
ome.util.SqlAction sql,
String sessionUuid,
String repoDir) |
LegacyRepositoryI(Ice.ObjectAdapter oa,
Registry reg,
Executor ex,
ome.util.SqlAction sql,
String sessionUuid,
FileMaker fileMaker) |
LegacyRepositoryI(Ice.ObjectAdapter oa,
Registry reg,
Executor ex,
ome.util.SqlAction sql,
String sessionUuid,
String repoDir) |
PublicRepositoryI(File root,
long repoObjectId,
Executor executor,
ome.util.SqlAction sql,
Principal principal) |
ScriptRepositoryI(Ice.ObjectAdapter oa,
Registry reg,
Executor ex,
ome.util.SqlAction sql,
String sessionUuid,
ScriptRepoHelper helper) |
TemporaryRepositoryI(Ice.ObjectAdapter oa,
Registry reg,
Executor ex,
ome.util.SqlAction sql,
String sessionUuid) |
Modifier and Type | Method and Description |
---|---|
protected SessionManagerI |
BlitzConfiguration.createAndRegisterManager(SessionManager sessionManager,
SecuritySystem securitySystem,
Executor executor) |
protected Glacier2.PermissionsVerifier |
BlitzConfiguration.createAndRegisterVerifier(SessionManager sessionManager,
Executor executor) |
Constructor and Description |
---|
BlitzConfiguration(Ice.InitializationData id,
Ring ring,
SessionManager sessionManager,
SecuritySystem securitySystem,
Executor executor,
int servantsPerSession)
Like
#BlitzConfiguration(ome.services.sessions.SessionManager, SecuritySystem, Executor)
but allows properties to be specified via an
InitializationData instance. |
BlitzConfiguration(Ring ring,
SessionManager sessionManager,
SecuritySystem securitySystem,
Executor executor,
int servantsPerSession)
Single constructor which builds all Ice instances needed for the server
runtime based on arguments provided.
|
CheckAllJobs(Executor ex,
Ice.ObjectAdapter oa,
TopicManager tm) |
CheckAllJobs(Executor ex,
Ice.ObjectAdapter oa,
TopicManager tm,
long waitMs) |
Constructor and Description |
---|
ExporterStepFactory(Executor ex,
Principal p) |
Constructor and Description |
---|
FullTextThread(SessionManager manager,
Executor executor,
FullTextIndexer indexer,
FullTextBridge bridge)
Uses default
Principal for indexing |
FullTextThread(SessionManager manager,
Executor executor,
FullTextIndexer indexer,
FullTextBridge bridge,
boolean waitForLock)
Uses default
Principal for indexing |
FullTextThread(SessionManager manager,
Executor executor,
FullTextIndexer indexer,
FullTextBridge bridge,
Principal principal)
Main constructor.
|
FullTextThread(SessionManager manager,
Executor executor,
FullTextIndexer indexer,
FullTextBridge bridge,
Principal principal,
boolean waitForLock)
Main constructor.
|
Constructor and Description |
---|
PixelDataThread(boolean performProcessing,
SessionManager manager,
Executor executor,
PixelDataHandler handler,
Principal principal,
String uuid,
int numThreads)
Main constructor.
|
PixelDataThread(SessionManager manager,
Executor executor,
PixelDataHandler handler,
Principal principal,
String uuid,
int numThreads)
Calculates
PixelDataThread.performProcessing based on the existence of the
"pixelDataTrigger" and passes all parameters to
the main ctor . |
PixelDataThread(SessionManager manager,
Executor executor,
PixelDataHandler handler,
String uuid)
Uses default
Principal for processing |
PixelDataThread(SessionManager manager,
Executor executor,
PixelDataHandler handler,
String uuid,
int numThreads)
Uses default
Principal for processing |
Constructor and Description |
---|
ProcessManager(SessionManager manager,
SecuritySystem sec,
Executor executor,
Processor... procs)
main constructor which takes a non-null array of
Processor
instances as its only argument. |
Modifier and Type | Field and Description |
---|---|
protected Executor |
GeomTool.ex |
Constructor and Description |
---|
GeomTool(PixelData data,
ome.util.SqlAction sql,
SessionFactory factory,
Executor ex,
String uuid) |
PopulateRoiJob(Roles roles,
Principal principal,
Executor executor,
File source) |
PopulateRoiJob(Roles roles,
String uuid,
Executor executor) |
PopulateRoiJob(Roles roles,
String uuid,
Executor executor,
File source) |
Modifier and Type | Method and Description |
---|---|
void |
ScriptRepoHelper.simpleDelete(Map<String,String> context,
Executor executor,
Principal p,
long id)
Unlike
ScriptRepoHelper.delete(long) this method simply performs the DB delete
on the given original file id. |
Constructor and Description |
---|
ScriptFinder(Roles roles,
Principal principal,
Executor executor,
File source) |
ScriptFinder(Roles roles,
String uuid,
Executor executor,
File source) |
ScriptRepoHelper(Executor ex,
String sessionUuid,
Roles roles) |
ScriptRepoHelper(File dir,
Executor ex,
Principal p,
Roles roles) |
ScriptRepoHelper(String uuid,
File dir,
Executor ex,
Principal p,
Roles roles) |
Modifier and Type | Field and Description |
---|---|
protected Executor |
SessionManagerImpl.executor |
Modifier and Type | Method and Description |
---|---|
void |
SessionManagerImpl.setExecutor(Executor executor) |
Constructor and Description |
---|
SessionBean(SessionManager mgr,
Executor ex,
CurrentDetails cd) |
Modifier and Type | Field and Description |
---|---|
protected Executor |
ShareBean.executor |
Constructor and Description |
---|
ShareBean(LocalAdmin admin,
SessionManager mgr,
ShareStore store,
Executor executor) |
Constructor and Description |
---|
Adapter(Object callback,
Ice.Current current,
IceMapper mapper,
Executor ex,
Principal p,
Executor.Work work) |
Modifier and Type | Class and Description |
---|---|
static class |
Executor.Impl |
Modifier and Type | Field and Description |
---|---|
protected Executor |
ExecutionThread.executor |
Constructor and Description |
---|
DBEnumCheck(Executor executor) |
ExecutionThread(SessionManager manager,
Executor executor,
Executor.Work work,
Principal principal)
Main constructor.
|
NamespaceCheck(Executor executor,
String uuid,
Roles roles) |
Modifier and Type | Field and Description |
---|---|
Executor |
SessionI.executor
Executor to be used by servant implementations which do not
delegate to the server package where all instances are wrapped with AOP
for dealing with Hibernate. |
Modifier and Type | Method and Description |
---|---|
Executor |
SessionI.getExecutor() |
Constructor and Description |
---|
SessionI(boolean reusedSession,
Ice.Current current,
ServantHolder holder,
Glacier2.SessionControlPrx control,
OmeroContext context,
SessionManager sessionManager,
Executor executor,
Principal principal) |
Constructor and Description |
---|
InteractiveProcessorI(Principal p,
SessionManager mgr,
Executor ex,
omero.grid.ProcessorPrx prx,
omero.model.Job job,
long timeout,
Glacier2.SessionControlPrx control,
ParamsHelper helper,
Ice.Current current) |
ParamsHelper(ParamsHelper.Acquirer acq,
Executor ex,
Principal p) |
Version: 4.4.12-ice34-b116
Copyright © 2014 The University of Dundee & Open Microscopy Environment. All Rights Reserved.